Protein–RNA interactions for Protein: A6NHR9

SMCHD1, Structural maintenance of chromosomes flexible hinge domain-containing protein 1, humanhuman

Predictions only

Length 2,005 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMCHD1A6NHR9 Y_RNA.790-201ENST00000614282 102 ntBASIC-1.3□□□□□ -2.62
SMCHD1A6NHR9 Y_RNA.782-201ENST00000614695 102 ntBASIC-1.3□□□□□ -2.62
SMCHD1A6NHR9 RNU6-788P-201ENST00000390967 104 ntBASIC-1.31□□□□□ -2.62
SMCHD1A6NHR9 RNU6-1312P-201ENST00000362425 108 ntBASIC-1.33□□□□□ -2.62
SMCHD1A6NHR9 MIR548AL-201ENST00000578416 97 ntBASIC-1.33□□□□□ -2.62
SMCHD1A6NHR9 MIR4441-201ENST00000582623 100 ntBASIC-1.33□□□□□ -2.62
SMCHD1A6NHR9 AC091912.2-201ENST00000624798 167 ntBASIC-1.33□□□□□ -2.62
SMCHD1A6NHR9 U6.97-201ENST00000636904 101 ntBASIC-1.33□□□□□ -2.62
SMCHD1A6NHR9 hsa-mir-3607.1-201ENST00000637229 79 ntBASIC-1.33□□□□□ -2.62
SMCHD1A6NHR9 RNU6-446P-201ENST00000362827 106 ntBASIC-1.33□□□□□ -2.62
SMCHD1A6NHR9 MIR633-201ENST00000384821 98 ntBASIC-1.33□□□□□ -2.62
SMCHD1A6NHR9 AC013734.1-201ENST00000619329 111 ntBASIC-1.33□□□□□ -2.62
SMCHD1A6NHR9 MIR4426-201ENST00000640330 63 ntBASIC-1.33□□□□□ -2.62
SMCHD1A6NHR9 Y_RNA.181-201ENST00000363872 101 ntBASIC-1.35□□□□□ -2.63
SMCHD1A6NHR9 Y_RNA.69-201ENST00000362885 109 ntBASIC-1.36□□□□□ -2.63
SMCHD1A6NHR9 AL451105.1-201ENST00000450005 189 ntBASIC-1.36□□□□□ -2.63
SMCHD1A6NHR9 RNU6-614P-201ENST00000384369 107 ntBASIC-1.37□□□□□ -2.63
SMCHD1A6NHR9 U6.59-201ENST00000615686 107 ntBASIC-1.37□□□□□ -2.63
SMCHD1A6NHR9 TRGJP-201ENST00000390338 61 ntAPPRIS P1 BASIC-1.37□□□□□ -2.63
SMCHD1A6NHR9 MIR202-201ENST00000362219 110 ntBASIC-1.38□□□□□ -2.63
SMCHD1A6NHR9 MIR6502-201ENST00000617296 76 ntBASIC-1.38□□□□□ -2.63
SMCHD1A6NHR9 RNU6-530P-201ENST00000391180 107 ntBASIC-1.39□□□□□ -2.63
SMCHD1A6NHR9 RNU6-980P-201ENST00000516925 103 ntBASIC-1.39□□□□□ -2.63
SMCHD1A6NHR9 RNU6-176P-201ENST00000517196 105 ntBASIC-1.39□□□□□ -2.63
SMCHD1A6NHR9 RNU6-1034P-201ENST00000365335 101 ntBASIC-1.39□□□□□ -2.63
SMCHD1A6NHR9 Y_RNA.616-201ENST00000410835 95 ntBASIC-1.4□□□□□ -2.63
SMCHD1A6NHR9 SNORD113-4-201ENST00000364802 75 ntBASIC-1.4□□□□□ -2.63
SMCHD1A6NHR9 RNA5SP180-201ENST00000516181 101 ntBASIC-1.4□□□□□ -2.63
SMCHD1A6NHR9 MIR4317-201ENST00000637586 65 ntBASIC-1.4□□□□□ -2.63
SMCHD1A6NHR9 MIR548H4-201ENST00000408689 111 ntBASIC-1.41□□□□□ -2.64
SMCHD1A6NHR9 RNU6-808P-201ENST00000391233 108 ntBASIC-1.42□□□□□ -2.64
SMCHD1A6NHR9 SNORA17.4-201ENST00000391287 132 ntBASIC-1.42□□□□□ -2.64
SMCHD1A6NHR9 RNU6-841P-201ENST00000383872 107 ntBASIC-1.43□□□□□ -2.64
SMCHD1A6NHR9 Y_RNA.442-201ENST00000384131 102 ntBASIC-1.43□□□□□ -2.64
SMCHD1A6NHR9 MIR6874-201ENST00000635894 71 ntBASIC-1.43□□□□□ -2.64
SMCHD1A6NHR9 RNU6-300P-201ENST00000459080 104 ntBASIC-1.44□□□□□ -2.64
SMCHD1A6NHR9 MIR1246-201ENST00000636535 73 ntBASIC-1.44□□□□□ -2.64
SMCHD1A6NHR9 Y_RNA.223-201ENST00000364290 113 ntBASIC-1.44□□□□□ -2.64
SMCHD1A6NHR9 MIR581-201ENST00000384895 96 ntBASIC-1.44□□□□□ -2.64
SMCHD1A6NHR9 MIR3123-201ENST00000583417 75 ntBASIC-1.44□□□□□ -2.64
SMCHD1A6NHR9 Y_RNA.379-201ENST00000365653 102 ntBASIC-1.45□□□□□ -2.64
SMCHD1A6NHR9 RNU6-742P-201ENST00000365289 107 ntBASIC-1.47□□□□□ -2.65
SMCHD1A6NHR9 Y_RNA.722-201ENST00000517279 114 ntBASIC-1.47□□□□□ -2.65
SMCHD1A6NHR9 Y_RNA.678-201ENST00000516408 96 ntBASIC-1.48□□□□□ -2.65
SMCHD1A6NHR9 snoU13.10-201ENST00000459301 103 ntBASIC-1.49□□□□□ -2.65
SMCHD1A6NHR9 RNU6-68P-201ENST00000516576 104 ntBASIC-1.49□□□□□ -2.65
SMCHD1A6NHR9 U4.2-201ENST00000618561 85 ntBASIC-1.49□□□□□ -2.65
SMCHD1A6NHR9 Y_RNA.502-201ENST00000384478 113 ntBASIC-1.5□□□□□ -2.65
SMCHD1A6NHR9 Y_RNA.284-201ENST00000364806 102 ntBASIC-1.5□□□□□ -2.65
SMCHD1A6NHR9 MTND4LP19-201ENST00000403051 166 ntBASIC-1.5□□□□□ -2.65
SMCHD1A6NHR9 MIR664B-201ENST00000626756 61 ntBASIC-1.5□□□□□ -2.65
SMCHD1A6NHR9 MIR548H1-201ENST00000408610 102 ntBASIC-1.51□□□□□ -2.65
SMCHD1A6NHR9 RNU6-119P-201ENST00000364882 107 ntBASIC-1.52□□□□□ -2.65
SMCHD1A6NHR9 MIR487B-201ENST00000385021 84 ntBASIC-1.53□□□□□ -2.65
SMCHD1A6NHR9 MIR1207-201ENST00000408249 87 ntBASIC-1.53□□□□□ -2.65
SMCHD1A6NHR9 Y_RNA.349-201ENST00000365406 102 ntBASIC-1.54□□□□□ -2.66
SMCHD1A6NHR9 MIR548W-201ENST00000581970 74 ntBASIC-1.54□□□□□ -2.66
SMCHD1A6NHR9 MIR548AM-201ENST00000584298 74 ntBASIC-1.54□□□□□ -2.66
SMCHD1A6NHR9 Y_RNA.232-201ENST00000364369 96 ntBASIC-1.55□□□□□ -2.66
SMCHD1A6NHR9 SMAD5-AS1_3.1-201ENST00000614187 124 ntBASIC-1.55□□□□□ -2.66
SMCHD1A6NHR9 RNU6-912P-201ENST00000363800 104 ntBASIC-1.56□□□□□ -2.66
SMCHD1A6NHR9 RNA5SP86-201ENST00000390869 98 ntBASIC-1.57□□□□□ -2.66
SMCHD1A6NHR9 MIR548AJ2-201ENST00000408539 92 ntBASIC-1.57□□□□□ -2.66
SMCHD1A6NHR9 Y_RNA.449-201ENST00000384187 102 ntBASIC-1.58□□□□□ -2.66
SMCHD1A6NHR9 AC108019.1-201ENST00000512540 175 ntBASIC-1.59□□□□□ -2.66
SMCHD1A6NHR9 RNU6-983P-201ENST00000516004 103 ntBASIC-1.59□□□□□ -2.66
SMCHD1A6NHR9 SNORD18.1-201ENST00000363807 70 ntBASIC-1.6□□□□□ -2.67
SMCHD1A6NHR9 MIR4756-201ENST00000577874 78 ntBASIC-1.6□□□□□ -2.67
SMCHD1A6NHR9 RNY4P27-201ENST00000363341 96 ntBASIC-1.62□□□□□ -2.67
SMCHD1A6NHR9 Y_RNA.55-201ENST00000362797 102 ntBASIC-1.63□□□□□ -2.67
SMCHD1A6NHR9 Y_RNA.129-201ENST00000363392 110 ntBASIC-1.63□□□□□ -2.67
SMCHD1A6NHR9 RNU6-1047P-201ENST00000364418 107 ntBASIC-1.63□□□□□ -2.67
SMCHD1A6NHR9 MIR545-201ENST00000385085 106 ntBASIC-1.64□□□□□ -2.67
SMCHD1A6NHR9 RNU4-88P-201ENST00000411220 86 ntBASIC-1.65□□□□□ -2.67
SMCHD1A6NHR9 hsa-mir-4773-1.1-201ENST00000585225 78 ntBASIC-1.65□□□□□ -2.67
SMCHD1A6NHR9 CR2-207ENST00000640301 151 ntTSL 1 (best) BASIC-1.65□□□□□ -2.67
SMCHD1A6NHR9 Y_RNA.206-201ENST00000364136 102 ntBASIC-1.66□□□□□ -2.67
SMCHD1A6NHR9 Y_RNA.543-201ENST00000384649 107 ntBASIC-1.66□□□□□ -2.67
SMCHD1A6NHR9 AC079150.2-201ENST00000443733 78 ntBASIC-1.66□□□□□ -2.67
SMCHD1A6NHR9 RNU6ATAC32P-201ENST00000516026 76 ntBASIC-1.67□□□□□ -2.68
SMCHD1A6NHR9 RNU6-936P-201ENST00000384005 107 ntBASIC-1.68□□□□□ -2.68
SMCHD1A6NHR9 RNU6-1008P-201ENST00000384160 104 ntBASIC-1.68□□□□□ -2.68
SMCHD1A6NHR9 RNU6-987P-201ENST00000384759 104 ntBASIC-1.69□□□□□ -2.68
SMCHD1A6NHR9 Y_RNA.591-201ENST00000410228 104 ntBASIC-1.69□□□□□ -2.68
SMCHD1A6NHR9 Y_RNA.103-201ENST00000363171 102 ntBASIC-1.7□□□□□ -2.68
SMCHD1A6NHR9 VTRNA2-1-201ENST00000602301 127 ntBASIC-1.71□□□□□ -2.68
SMCHD1A6NHR9 RNA5SP405-201ENST00000363059 114 ntBASIC-1.71□□□□□ -2.68
SMCHD1A6NHR9 Y_RNA.564-201ENST00000384708 106 ntBASIC-1.71□□□□□ -2.68
SMCHD1A6NHR9 DLEU2_4.2-201ENST00000616613 58 ntBASIC-1.72□□□□□ -2.68
SMCHD1A6NHR9 SNORD113-3-201ENST00000364830 72 ntBASIC-1.73□□□□□ -2.69
SMCHD1A6NHR9 RNA5SP224-201ENST00000365069 126 ntBASIC-1.73□□□□□ -2.69
SMCHD1A6NHR9 RNU6-822P-201ENST00000362707 106 ntBASIC-1.73□□□□□ -2.69
SMCHD1A6NHR9 RNU6-753P-201ENST00000363926 107 ntBASIC-1.73□□□□□ -2.69
SMCHD1A6NHR9 Y_RNA.382-201ENST00000365672 114 ntBASIC-1.73□□□□□ -2.69
SMCHD1A6NHR9 RNU6-345P-201ENST00000517001 107 ntBASIC-1.73□□□□□ -2.69
SMCHD1A6NHR9 Y_RNA.211-201ENST00000364164 101 ntBASIC-1.75□□□□□ -2.69
SMCHD1A6NHR9 RNU6-838P-201ENST00000363399 108 ntBASIC-1.77□□□□□ -2.69
SMCHD1A6NHR9 ZEB2_AS1_4.1-201ENST00000615159 78 ntBASIC-1.77□□□□□ -2.69
SMCHD1A6NHR9 Y_RNA.475-201ENST00000384345 101 ntBASIC-1.78□□□□□ -2.69
SMCHD1A6NHR9 Y_RNA.647-201ENST00000459194 112 ntBASIC-1.78□□□□□ -2.69
Retrieved 100 of 98,524 protein–RNA pairs in 179.5 ms