Protein–RNA interactions for Protein: A0A0J9YXS1

NPHP3-ACAD11, NPHP3-ACAD11 readthrough (NMD candidate) (Fragment), humanhuman

Predictions only

Length 232 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP3-ACAD11A0A0J9YXS1 snoU13.19-201ENST00000459148 104 ntBASIC-1.19□□□□□ -2.6
NPHP3-ACAD11A0A0J9YXS1 MIR6738-201ENST00000619620 64 ntBASIC-1.19□□□□□ -2.6
NPHP3-ACAD11A0A0J9YXS1 SNORD18C-201ENST00000362704 69 ntBASIC-1.2□□□□□ -2.6
NPHP3-ACAD11A0A0J9YXS1 MIR4306-201ENST00000583390 91 ntBASIC-1.2□□□□□ -2.6
NPHP3-ACAD11A0A0J9YXS1 RNU6-30P-201ENST00000384561 107 ntBASIC-1.21□□□□□ -2.6
NPHP3-ACAD11A0A0J9YXS1 MIR548AX-201ENST00000580117 73 ntBASIC-1.21□□□□□ -2.6
NPHP3-ACAD11A0A0J9YXS1 Y_RNA.178-201ENST00000363832 102 ntBASIC-1.23□□□□□ -2.61
NPHP3-ACAD11A0A0J9YXS1 RNU6-1008P-201ENST00000384160 104 ntBASIC-1.23□□□□□ -2.61
NPHP3-ACAD11A0A0J9YXS1 RNU6-400P-201ENST00000391173 106 ntBASIC-1.23□□□□□ -2.61
NPHP3-ACAD11A0A0J9YXS1 Y_RNA.129-201ENST00000363392 110 ntBASIC-1.28□□□□□ -2.61
NPHP3-ACAD11A0A0J9YXS1 RNU6-10P-201ENST00000384036 107 ntBASIC-1.28□□□□□ -2.61
NPHP3-ACAD11A0A0J9YXS1 RNU6-822P-201ENST00000362707 106 ntBASIC-1.29□□□□□ -2.62
NPHP3-ACAD11A0A0J9YXS1 RNU6-695P-201ENST00000391157 104 ntBASIC-1.29□□□□□ -2.62
NPHP3-ACAD11A0A0J9YXS1 MIR8485-201ENST00000401372 91 ntBASIC-1.29□□□□□ -2.62
NPHP3-ACAD11A0A0J9YXS1 MIR3115-201ENST00000577915 68 ntBASIC-1.29□□□□□ -2.62
NPHP3-ACAD11A0A0J9YXS1 SMAD5-AS1_3.1-201ENST00000614187 124 ntBASIC-1.29□□□□□ -2.62
NPHP3-ACAD11A0A0J9YXS1 RNU6-1326P-201ENST00000391262 107 ntBASIC-1.3□□□□□ -2.62
NPHP3-ACAD11A0A0J9YXS1 MIR3165-201ENST00000579874 75 ntBASIC-1.3□□□□□ -2.62
NPHP3-ACAD11A0A0J9YXS1 Y_RNA.365-201ENST00000365537 102 ntBASIC-1.31□□□□□ -2.62
NPHP3-ACAD11A0A0J9YXS1 RNU6-68P-201ENST00000516576 104 ntBASIC-1.31□□□□□ -2.62
NPHP3-ACAD11A0A0J9YXS1 RNU6-706P-201ENST00000517229 104 ntBASIC-1.31□□□□□ -2.62
NPHP3-ACAD11A0A0J9YXS1 MIR379-201ENST00000362218 67 ntBASIC-1.32□□□□□ -2.62
NPHP3-ACAD11A0A0J9YXS1 RNA5SP476-201ENST00000516613 103 ntBASIC-1.32□□□□□ -2.62
NPHP3-ACAD11A0A0J9YXS1 RNA5SP67-201ENST00000516422 131 ntBASIC-1.34□□□□□ -2.62
NPHP3-ACAD11A0A0J9YXS1 Y_RNA.320-201ENST00000365144 102 ntBASIC-1.35□□□□□ -2.63
NPHP3-ACAD11A0A0J9YXS1 MIR587-201ENST00000384845 96 ntBASIC-1.35□□□□□ -2.63
NPHP3-ACAD11A0A0J9YXS1 Y_RNA.345-201ENST00000365384 92 ntBASIC-1.36□□□□□ -2.63
NPHP3-ACAD11A0A0J9YXS1 AC138207.3-201ENST00000585289 166 ntBASIC-1.36□□□□□ -2.63
NPHP3-ACAD11A0A0J9YXS1 SNORD19B.1-201ENST00000630615 80 ntBASIC-1.36□□□□□ -2.63
NPHP3-ACAD11A0A0J9YXS1 RNU6-1034P-201ENST00000365335 101 ntBASIC-1.37□□□□□ -2.63
NPHP3-ACAD11A0A0J9YXS1 RNU6-59P-201ENST00000384787 107 ntBASIC-1.37□□□□□ -2.63
NPHP3-ACAD11A0A0J9YXS1 HAR1A.1-201ENST00000459583 118 ntBASIC-1.37□□□□□ -2.63
NPHP3-ACAD11A0A0J9YXS1 MIR6502-201ENST00000617296 76 ntBASIC-1.37□□□□□ -2.63
NPHP3-ACAD11A0A0J9YXS1 MIR548AJ2-201ENST00000408539 92 ntBASIC-1.41□□□□□ -2.64
NPHP3-ACAD11A0A0J9YXS1 HLA-S-202ENST00000425174 53 ntBASIC-1.42□□□□□ -2.64
NPHP3-ACAD11A0A0J9YXS1 MIR3123-201ENST00000583417 75 ntBASIC-1.43□□□□□ -2.64
NPHP3-ACAD11A0A0J9YXS1 Y_RNA.449-201ENST00000384187 102 ntBASIC-1.44□□□□□ -2.64
NPHP3-ACAD11A0A0J9YXS1 Y_RNA.175-201ENST00000363794 111 ntBASIC-1.46□□□□□ -2.64
NPHP3-ACAD11A0A0J9YXS1 Y_RNA.382-201ENST00000365672 114 ntBASIC-1.46□□□□□ -2.64
NPHP3-ACAD11A0A0J9YXS1 MIR5591-201ENST00000578248 65 ntBASIC-1.46□□□□□ -2.64
NPHP3-ACAD11A0A0J9YXS1 RNU6-912P-201ENST00000363800 104 ntBASIC-1.47□□□□□ -2.64
NPHP3-ACAD11A0A0J9YXS1 MIR4770-201ENST00000579149 58 ntBASIC-1.49□□□□□ -2.65
NPHP3-ACAD11A0A0J9YXS1 MIR4520-1-201ENST00000582609 70 ntBASIC-1.5□□□□□ -2.65
NPHP3-ACAD11A0A0J9YXS1 Y_RNA.583-201ENST00000391033 113 ntBASIC-1.51□□□□□ -2.65
NPHP3-ACAD11A0A0J9YXS1 Y_RNA.514-201ENST00000384528 112 ntBASIC-1.53□□□□□ -2.65
NPHP3-ACAD11A0A0J9YXS1 MIR548H1-201ENST00000408610 102 ntBASIC-1.53□□□□□ -2.65
NPHP3-ACAD11A0A0J9YXS1 MIR409-201ENST00000362237 79 ntBASIC-1.54□□□□□ -2.66
NPHP3-ACAD11A0A0J9YXS1 RNU6-226P-201ENST00000363778 107 ntBASIC-1.55□□□□□ -2.66
NPHP3-ACAD11A0A0J9YXS1 hsa-mir-3607.1-201ENST00000637229 79 ntBASIC-1.55□□□□□ -2.66
NPHP3-ACAD11A0A0J9YXS1 RNA5SP461-201ENST00000516451 104 ntBASIC-1.56□□□□□ -2.66
NPHP3-ACAD11A0A0J9YXS1 MIR4320-201ENST00000636981 65 ntBASIC-1.56□□□□□ -2.66
NPHP3-ACAD11A0A0J9YXS1 Y_RNA.103-201ENST00000363171 102 ntBASIC-1.57□□□□□ -2.66
NPHP3-ACAD11A0A0J9YXS1 RNU6-841P-201ENST00000383872 107 ntBASIC-1.57□□□□□ -2.66
NPHP3-ACAD11A0A0J9YXS1 Y_RNA.206-201ENST00000364136 102 ntBASIC-1.58□□□□□ -2.66
NPHP3-ACAD11A0A0J9YXS1 RNU6-1324P-201ENST00000384222 107 ntBASIC-1.58□□□□□ -2.66
NPHP3-ACAD11A0A0J9YXS1 snoU13.10-201ENST00000459301 103 ntBASIC-1.58□□□□□ -2.66
NPHP3-ACAD11A0A0J9YXS1 SNORD115.2-201ENST00000391126 59 ntBASIC-1.59□□□□□ -2.66
NPHP3-ACAD11A0A0J9YXS1 Y_RNA.678-201ENST00000516408 96 ntBASIC-1.59□□□□□ -2.66
NPHP3-ACAD11A0A0J9YXS1 MIR548W-201ENST00000581970 74 ntBASIC-1.59□□□□□ -2.66
NPHP3-ACAD11A0A0J9YXS1 ZEB2_AS1_4.1-201ENST00000615159 78 ntBASIC-1.59□□□□□ -2.66
NPHP3-ACAD11A0A0J9YXS1 Y_RNA.349-201ENST00000365406 102 ntBASIC-1.6□□□□□ -2.67
NPHP3-ACAD11A0A0J9YXS1 hsa-mir-4773-1.1-201ENST00000585225 78 ntBASIC-1.6□□□□□ -2.67
NPHP3-ACAD11A0A0J9YXS1 Y_RNA.134-201ENST00000363435 105 ntBASIC-1.61□□□□□ -2.67
NPHP3-ACAD11A0A0J9YXS1 MIAT_exon5_2.1-201ENST00000613562 85 ntBASIC-1.62□□□□□ -2.67
NPHP3-ACAD11A0A0J9YXS1 RNA5SP266-201ENST00000410273 108 ntBASIC-1.63□□□□□ -2.67
NPHP3-ACAD11A0A0J9YXS1 MIR548AM-201ENST00000584298 74 ntBASIC-1.63□□□□□ -2.67
NPHP3-ACAD11A0A0J9YXS1 RNU6-1169P-201ENST00000363537 103 ntBASIC-1.65□□□□□ -2.67
NPHP3-ACAD11A0A0J9YXS1 RNA5SP86-201ENST00000390869 98 ntBASIC-1.65□□□□□ -2.67
NPHP3-ACAD11A0A0J9YXS1 RNA5SP180-201ENST00000516181 101 ntBASIC-1.66□□□□□ -2.68
NPHP3-ACAD11A0A0J9YXS1 Y_RNA.232-201ENST00000364369 96 ntBASIC-1.67□□□□□ -2.68
NPHP3-ACAD11A0A0J9YXS1 FTX_4.1-201ENST00000616291 147 ntBASIC-1.67□□□□□ -2.68
NPHP3-ACAD11A0A0J9YXS1 MIR1246-201ENST00000636535 73 ntBASIC-1.67□□□□□ -2.68
NPHP3-ACAD11A0A0J9YXS1 U6.103-201ENST00000637085 61 ntBASIC-1.69□□□□□ -2.68
NPHP3-ACAD11A0A0J9YXS1 RNU6-836P-201ENST00000362920 107 ntBASIC-1.71□□□□□ -2.68
NPHP3-ACAD11A0A0J9YXS1 Y_RNA.260-201ENST00000364628 101 ntBASIC-1.71□□□□□ -2.68
NPHP3-ACAD11A0A0J9YXS1 RNA5SP224-201ENST00000365069 126 ntBASIC-1.71□□□□□ -2.68
NPHP3-ACAD11A0A0J9YXS1 Y_RNA.468-201ENST00000384298 102 ntBASIC-1.71□□□□□ -2.68
NPHP3-ACAD11A0A0J9YXS1 MIR487B-201ENST00000385021 84 ntBASIC-1.71□□□□□ -2.68
NPHP3-ACAD11A0A0J9YXS1 Y_RNA.442-201ENST00000384131 102 ntBASIC-1.72□□□□□ -2.68
NPHP3-ACAD11A0A0J9YXS1 MIR1254-1-201ENST00000408257 97 ntBASIC-1.72□□□□□ -2.68
NPHP3-ACAD11A0A0J9YXS1 RNU6-345P-201ENST00000517001 107 ntBASIC-1.72□□□□□ -2.68
NPHP3-ACAD11A0A0J9YXS1 SNORD18.1-201ENST00000363807 70 ntBASIC-1.74□□□□□ -2.69
NPHP3-ACAD11A0A0J9YXS1 Y_RNA.181-201ENST00000363872 101 ntBASIC-1.74□□□□□ -2.69
NPHP3-ACAD11A0A0J9YXS1 Y_RNA.434-201ENST00000384090 100 ntBASIC-1.74□□□□□ -2.69
NPHP3-ACAD11A0A0J9YXS1 Y_RNA.457-201ENST00000384237 111 ntBASIC-1.74□□□□□ -2.69
NPHP3-ACAD11A0A0J9YXS1 SNORD113-3-201ENST00000364830 72 ntBASIC-1.75□□□□□ -2.69
NPHP3-ACAD11A0A0J9YXS1 RNU6-983P-201ENST00000516004 103 ntBASIC-1.76□□□□□ -2.69
NPHP3-ACAD11A0A0J9YXS1 MIR1285-2-201ENST00000408311 88 ntBASIC-1.78□□□□□ -2.69
NPHP3-ACAD11A0A0J9YXS1 AC097484.2-201ENST00000509147 251 ntBASIC-1.8□□□□□ -2.7
NPHP3-ACAD11A0A0J9YXS1 RNA5SP331-201ENST00000364986 107 ntBASIC-1.83□□□□□ -2.7
NPHP3-ACAD11A0A0J9YXS1 SNORD45C-201ENST00000383893 79 ntBASIC-1.83□□□□□ -2.7
NPHP3-ACAD11A0A0J9YXS1 RNU6-724P-201ENST00000390958 105 ntBASIC-1.83□□□□□ -2.7
NPHP3-ACAD11A0A0J9YXS1 SNX3P1X-201ENST00000414887 175 ntBASIC-1.83□□□□□ -2.7
NPHP3-ACAD11A0A0J9YXS1 Y_RNA.543-201ENST00000384649 107 ntBASIC-1.85□□□□□ -2.71
NPHP3-ACAD11A0A0J9YXS1 Y_RNA.647-201ENST00000459194 112 ntBASIC-1.85□□□□□ -2.71
NPHP3-ACAD11A0A0J9YXS1 Y_RNA.640-201ENST00000459296 112 ntBASIC-1.85□□□□□ -2.71
NPHP3-ACAD11A0A0J9YXS1 Y_RNA.803-201ENST00000614432 112 ntBASIC-1.85□□□□□ -2.71
NPHP3-ACAD11A0A0J9YXS1 Y_RNA.815-201ENST00000616655 112 ntBASIC-1.85□□□□□ -2.71
NPHP3-ACAD11A0A0J9YXS1 Y_RNA.795-201ENST00000619475 112 ntBASIC-1.85□□□□□ -2.71
NPHP3-ACAD11A0A0J9YXS1 Y_RNA.827-201ENST00000638104 112 ntBASIC-1.85□□□□□ -2.71
Retrieved 100 of 98,524 protein–RNA pairs in 168 ms