Protein–RNA interactions for Protein: Q9UBR4

LHX3, LIM/homeobox protein Lhx3, humanhuman

Predictions only

Length 397 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LHX3Q9UBR4 RNU6-118P-201ENST00000516552 102 ntBASIC-1.71□□□□□ -2.68
LHX3Q9UBR4 Y_RNA.694-201ENST00000516677 117 ntBASIC-1.71□□□□□ -2.68
LHX3Q9UBR4 Y_RNA.788-201ENST00000622394 112 ntBASIC-1.71□□□□□ -2.68
LHX3Q9UBR4 Y_RNA.103-201ENST00000363171 102 ntBASIC-1.72□□□□□ -2.68
LHX3Q9UBR4 SNORD116-24-201ENST00000384549 92 ntBASIC-1.72□□□□□ -2.68
LHX3Q9UBR4 MIR548AA1-201ENST00000384971 97 ntBASIC-1.72□□□□□ -2.68
LHX3Q9UBR4 MIR664B-201ENST00000626756 61 ntBASIC-1.72□□□□□ -2.68
LHX3Q9UBR4 RNU6-1111P-201ENST00000391118 107 ntBASIC-1.73□□□□□ -2.69
LHX3Q9UBR4 RNU6-1267P-201ENST00000410747 107 ntBASIC-1.73□□□□□ -2.69
LHX3Q9UBR4 MIR3134-201ENST00000579433 74 ntBASIC-1.73□□□□□ -2.69
LHX3Q9UBR4 SNORD115-31-201ENST00000365318 82 ntBASIC-1.74□□□□□ -2.69
LHX3Q9UBR4 Y_RNA.475-201ENST00000384345 101 ntBASIC-1.74□□□□□ -2.69
LHX3Q9UBR4 RNU6-1247P-201ENST00000516622 98 ntBASIC-1.74□□□□□ -2.69
LHX3Q9UBR4 MIR4666B-201ENST00000578142 81 ntBASIC-1.74□□□□□ -2.69
LHX3Q9UBR4 SNORD1B-201ENST00000363091 84 ntBASIC-1.75□□□□□ -2.69
LHX3Q9UBR4 MIR3170-201ENST00000582699 77 ntBASIC-1.75□□□□□ -2.69
LHX3Q9UBR4 LINC01984-201ENST00000583863 301 ntTSL 3 BASIC-1.76□□□□□ -2.69
LHX3Q9UBR4 Y_RNA.284-201ENST00000364806 102 ntBASIC-1.77□□□□□ -2.69
LHX3Q9UBR4 AL078612.1-201ENST00000533009 150 ntTSL 5 BASIC-1.77□□□□□ -2.69
LHX3Q9UBR4 MIR5582-201ENST00000579697 68 ntBASIC-1.77□□□□□ -2.69
LHX3Q9UBR4 RNU6-247P-201ENST00000362636 107 ntBASIC-1.79□□□□□ -2.7
LHX3Q9UBR4 Y_RNA.175-201ENST00000363794 111 ntBASIC-1.79□□□□□ -2.7
LHX3Q9UBR4 MIR496-201ENST00000385226 102 ntBASIC-1.79□□□□□ -2.7
LHX3Q9UBR4 RNU6-980P-201ENST00000516925 103 ntBASIC-1.79□□□□□ -2.7
LHX3Q9UBR4 MIR3139-201ENST00000579145 76 ntBASIC-1.79□□□□□ -2.7
LHX3Q9UBR4 MIR23C-201ENST00000579846 100 ntBASIC-1.79□□□□□ -2.7
LHX3Q9UBR4 RNU6-787P-201ENST00000384032 107 ntBASIC-1.8□□□□□ -2.7
LHX3Q9UBR4 Y_RNA.564-201ENST00000384708 106 ntBASIC-1.8□□□□□ -2.7
LHX3Q9UBR4 RNU6-995P-201ENST00000391244 107 ntBASIC-1.8□□□□□ -2.7
LHX3Q9UBR4 RNU6-687P-201ENST00000516443 89 ntBASIC-1.8□□□□□ -2.7
LHX3Q9UBR4 RNU6-119P-201ENST00000364882 107 ntBASIC-1.81□□□□□ -2.7
LHX3Q9UBR4 RNU7-151P-201ENST00000516930 53 ntBASIC-1.81□□□□□ -2.7
LHX3Q9UBR4 SPRY4-IT1_2.1-201ENST00000612613 121 ntBASIC-1.81□□□□□ -2.7
LHX3Q9UBR4 Y_RNA.369-201ENST00000365568 117 ntBASIC-1.82□□□□□ -2.7
LHX3Q9UBR4 RNU6-820P-201ENST00000384273 107 ntBASIC-1.82□□□□□ -2.7
LHX3Q9UBR4 MIR579-201ENST00000385221 98 ntBASIC-1.82□□□□□ -2.7
LHX3Q9UBR4 RNA5SP405-201ENST00000363059 114 ntBASIC-1.83□□□□□ -2.7
LHX3Q9UBR4 Y_RNA.211-201ENST00000364164 101 ntBASIC-1.83□□□□□ -2.7
LHX3Q9UBR4 Y_RNA.228-201ENST00000364346 98 ntBASIC-1.83□□□□□ -2.7
LHX3Q9UBR4 RNU6-695P-201ENST00000391157 104 ntBASIC-1.83□□□□□ -2.7
LHX3Q9UBR4 RNU6-172P-201ENST00000411000 93 ntBASIC-1.83□□□□□ -2.7
LHX3Q9UBR4 RNU6-542P-201ENST00000516405 103 ntBASIC-1.83□□□□□ -2.7
LHX3Q9UBR4 RNU6-411P-201ENST00000384451 107 ntBASIC-1.84□□□□□ -2.7
LHX3Q9UBR4 Y_RNA.699-201ENST00000516803 93 ntBASIC-1.84□□□□□ -2.7
LHX3Q9UBR4 VTRNA2-1-201ENST00000602301 127 ntBASIC-1.84□□□□□ -2.7
LHX3Q9UBR4 AC062037.1-201ENST00000605302 128 ntBASIC-1.84□□□□□ -2.7
LHX3Q9UBR4 CR2-207ENST00000640301 151 ntTSL 1 (best) BASIC-1.85□□□□□ -2.71
LHX3Q9UBR4 MT-TM-201ENST00000387377 68 ntBASIC-1.86□□□□□ -2.71
LHX3Q9UBR4 RNU6-258P-201ENST00000390884 101 ntBASIC-1.86□□□□□ -2.71
LHX3Q9UBR4 Y_RNA.81-201ENST00000362997 102 ntBASIC-1.87□□□□□ -2.71
LHX3Q9UBR4 RNU6-194P-201ENST00000363862 105 ntBASIC-1.87□□□□□ -2.71
LHX3Q9UBR4 TRAJ9-201ENST00000390528 61 ntAPPRIS P1 BASIC-1.87□□□□□ -2.71
LHX3Q9UBR4 RNU6-1015P-201ENST00000517121 99 ntBASIC-1.87□□□□□ -2.71
LHX3Q9UBR4 RNU6-92P-201ENST00000605893 104 ntBASIC-1.87□□□□□ -2.71
LHX3Q9UBR4 U7.4-201ENST00000614961 63 ntBASIC-1.87□□□□□ -2.71
LHX3Q9UBR4 RNU4-88P-201ENST00000411220 86 ntBASIC-1.89□□□□□ -2.71
LHX3Q9UBR4 AC120024.2-201ENST00000576526 175 ntBASIC-1.89□□□□□ -2.71
LHX3Q9UBR4 SNORD63.2-201ENST00000516303 64 ntBASIC-1.9□□□□□ -2.71
LHX3Q9UBR4 MIR548AM-201ENST00000584298 74 ntBASIC-1.9□□□□□ -2.71
LHX3Q9UBR4 RNU6-841P-201ENST00000383872 107 ntBASIC-1.91□□□□□ -2.72
LHX3Q9UBR4 MIR7978-201ENST00000636158 59 ntBASIC-1.91□□□□□ -2.72
LHX3Q9UBR4 hsa-mir-4536-1.1-201ENST00000636519 88 ntBASIC-1.91□□□□□ -2.72
LHX3Q9UBR4 RNU6-563P-201ENST00000364872 108 ntBASIC-1.92□□□□□ -2.72
LHX3Q9UBR4 RNU6-669P-201ENST00000365575 107 ntBASIC-1.92□□□□□ -2.72
LHX3Q9UBR4 MIR3123-201ENST00000583417 75 ntBASIC-1.92□□□□□ -2.72
LHX3Q9UBR4 Y_RNA.591-201ENST00000410228 104 ntBASIC-1.93□□□□□ -2.72
LHX3Q9UBR4 Y_RNA.781-201ENST00000620301 103 ntBASIC-1.93□□□□□ -2.72
LHX3Q9UBR4 MTRNR2L9-201ENST00000622562 75 ntBASIC-1.93□□□□□ -2.72
LHX3Q9UBR4 SNORD60.1-201ENST00000362451 73 ntBASIC-1.95□□□□□ -2.72
LHX3Q9UBR4 Y_RNA.443-201ENST00000384135 111 ntBASIC-1.95□□□□□ -2.72
LHX3Q9UBR4 RNU6-663P-201ENST00000391105 106 ntBASIC-1.95□□□□□ -2.72
LHX3Q9UBR4 RNU6-634P-201ENST00000459134 106 ntBASIC-1.95□□□□□ -2.72
LHX3Q9UBR4 SNORA27.2-201ENST00000363365 126 ntBASIC-1.96□□□□□ -2.72
LHX3Q9UBR4 SNORD54-201ENST00000459159 67 ntBASIC-1.96□□□□□ -2.72
LHX3Q9UBR4 ST7-OT3_1.1-201ENST00000619607 74 ntBASIC-1.96□□□□□ -2.72
LHX3Q9UBR4 TARS-215ENST00000626210 201 ntTSL 5 BASIC-1.96□□□□□ -2.72
LHX3Q9UBR4 RNU6-1306P-201ENST00000365219 99 ntBASIC-1.97□□□□□ -2.72
LHX3Q9UBR4 Y_RNA.449-201ENST00000384187 102 ntBASIC-1.98□□□□□ -2.73
LHX3Q9UBR4 MIR125B1-201ENST00000385236 88 ntBASIC-1.98□□□□□ -2.73
LHX3Q9UBR4 Y_RNA.545-201ENST00000384652 105 ntBASIC-1.99□□□□□ -2.73
LHX3Q9UBR4 RNA5SP93-201ENST00000362525 114 ntBASIC-2□□□□□ -2.73
LHX3Q9UBR4 SNORD73B-201ENST00000364394 72 ntBASIC-2□□□□□ -2.73
LHX3Q9UBR4 RNU6-523P-201ENST00000516304 54 ntBASIC-2□□□□□ -2.73
LHX3Q9UBR4 RNA5SP170-201ENST00000517150 101 ntBASIC-2□□□□□ -2.73
LHX3Q9UBR4 MIR7110-201ENST00000612638 86 ntBASIC-2□□□□□ -2.73
LHX3Q9UBR4 MIR3202-2-201ENST00000635980 79 ntBASIC-2□□□□□ -2.73
LHX3Q9UBR4 RNU6-1034P-201ENST00000365335 101 ntBASIC-2.01□□□□□ -2.73
LHX3Q9UBR4 RNU6-974P-201ENST00000384099 108 ntBASIC-2.01□□□□□ -2.73
LHX3Q9UBR4 Y_RNA.139-201ENST00000363464 102 ntBASIC-2.02□□□□□ -2.73
LHX3Q9UBR4 RNU6-573P-201ENST00000383938 106 ntBASIC-2.02□□□□□ -2.73
LHX3Q9UBR4 RNU6-1124P-201ENST00000384169 107 ntBASIC-2.03□□□□□ -2.73
LHX3Q9UBR4 SNORD30.1-201ENST00000391309 70 ntBASIC-2.03□□□□□ -2.73
LHX3Q9UBR4 RNU6-231P-201ENST00000517122 103 ntBASIC-2.03□□□□□ -2.73
LHX3Q9UBR4 RNU6-1298P-201ENST00000362456 101 ntBASIC-2.04□□□□□ -2.74
LHX3Q9UBR4 RNU6-810P-201ENST00000364001 107 ntBASIC-2.04□□□□□ -2.74
LHX3Q9UBR4 SNORD116.2-201ENST00000391251 93 ntBASIC-2.04□□□□□ -2.74
LHX3Q9UBR4 RNU7-160P-201ENST00000516660 62 ntBASIC-2.04□□□□□ -2.74
LHX3Q9UBR4 AC005520.4-201ENST00000604337 90 ntBASIC-2.04□□□□□ -2.74
LHX3Q9UBR4 Y_RNA.321-201ENST00000365149 102 ntBASIC-2.05□□□□□ -2.74
LHX3Q9UBR4 AC013734.1-201ENST00000619329 111 ntBASIC-2.05□□□□□ -2.74
Retrieved 100 of 98,524 protein–RNA pairs in 532.8 ms