Protein–RNA interactions for Protein: Q99801

NKX3-1, Homeobox protein Nkx-3.1, humanhuman

Predicted RBP Predictions only

Length 234 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NKX3-1Q99801 SNX3P1X-201ENST00000414887 175 ntBASIC-1.29□□□□□ -2.62
NKX3-1Q99801 RNU6-776P-201ENST00000364403 104 ntBASIC-1.3□□□□□ -2.62
NKX3-1Q99801 RNU6-1022P-201ENST00000365049 104 ntBASIC-1.3□□□□□ -2.62
NKX3-1Q99801 Y_RNA.468-201ENST00000384298 102 ntBASIC-1.3□□□□□ -2.62
NKX3-1Q99801 RNU6-576P-201ENST00000390854 102 ntBASIC-1.3□□□□□ -2.62
NKX3-1Q99801 MIR4306-201ENST00000583390 91 ntBASIC-1.3□□□□□ -2.62
NKX3-1Q99801 U6.111-201ENST00000636093 83 ntBASIC-1.3□□□□□ -2.62
NKX3-1Q99801 RNU6-164P-201ENST00000364604 103 ntBASIC-1.31□□□□□ -2.62
NKX3-1Q99801 RNU6-258P-201ENST00000390884 101 ntBASIC-1.31□□□□□ -2.62
NKX3-1Q99801 RNU6-1111P-201ENST00000391118 107 ntBASIC-1.31□□□□□ -2.62
NKX3-1Q99801 Y_RNA.685-201ENST00000516532 108 ntBASIC-1.31□□□□□ -2.62
NKX3-1Q99801 MIR7978-201ENST00000636158 59 ntBASIC-1.31□□□□□ -2.62
NKX3-1Q99801 MIR4662A-201ENST00000637499 67 ntBASIC-1.32□□□□□ -2.62
NKX3-1Q99801 SNORA25.5-201ENST00000363782 126 ntBASIC-1.33□□□□□ -2.62
NKX3-1Q99801 RNU6-995P-201ENST00000391244 107 ntBASIC-1.33□□□□□ -2.62
NKX3-1Q99801 MIR8485-201ENST00000401372 91 ntBASIC-1.34□□□□□ -2.62
NKX3-1Q99801 RNA5SP461-201ENST00000516451 104 ntBASIC-1.34□□□□□ -2.62
NKX3-1Q99801 RNU6-539P-201ENST00000516665 103 ntBASIC-1.34□□□□□ -2.62
NKX3-1Q99801 AC091912.2-201ENST00000624798 167 ntBASIC-1.34□□□□□ -2.62
NKX3-1Q99801 MIR6874-201ENST00000635894 71 ntBASIC-1.34□□□□□ -2.62
NKX3-1Q99801 RNU6-247P-201ENST00000362636 107 ntBASIC-1.35□□□□□ -2.63
NKX3-1Q99801 MIR1468-201ENST00000410600 86 ntBASIC-1.35□□□□□ -2.63
NKX3-1Q99801 MIR198-201ENST00000637333 62 ntBASIC-1.35□□□□□ -2.63
NKX3-1Q99801 MIR4511-201ENST00000582784 87 ntBASIC-1.36□□□□□ -2.63
NKX3-1Q99801 MTRNR2L9-201ENST00000622562 75 ntBASIC-1.36□□□□□ -2.63
NKX3-1Q99801 RNU6-1275P-201ENST00000391087 107 ntBASIC-1.37□□□□□ -2.63
NKX3-1Q99801 RNU6-122P-201ENST00000516818 107 ntBASIC-1.37□□□□□ -2.63
NKX3-1Q99801 RNU6-231P-201ENST00000517122 103 ntBASIC-1.37□□□□□ -2.63
NKX3-1Q99801 Y_RNA.365-201ENST00000365537 102 ntBASIC-1.38□□□□□ -2.63
NKX3-1Q99801 RNU6-669P-201ENST00000365575 107 ntBASIC-1.38□□□□□ -2.63
NKX3-1Q99801 RNU6-800P-201ENST00000384473 103 ntBASIC-1.38□□□□□ -2.63
NKX3-1Q99801 SNORD63.2-201ENST00000516303 64 ntBASIC-1.38□□□□□ -2.63
NKX3-1Q99801 MIR7110-201ENST00000612638 86 ntBASIC-1.38□□□□□ -2.63
NKX3-1Q99801 MIR125B1-201ENST00000385236 88 ntBASIC-1.39□□□□□ -2.63
NKX3-1Q99801 Y_RNA.699-201ENST00000516803 93 ntBASIC-1.39□□□□□ -2.63
NKX3-1Q99801 RNU6-810P-201ENST00000364001 107 ntBASIC-1.4□□□□□ -2.63
NKX3-1Q99801 RNU6-974P-201ENST00000384099 108 ntBASIC-1.4□□□□□ -2.63
NKX3-1Q99801 MIR601-201ENST00000385256 79 ntBASIC-1.4□□□□□ -2.63
NKX3-1Q99801 SNORD116.2-201ENST00000391251 93 ntBASIC-1.4□□□□□ -2.63
NKX3-1Q99801 AC018880.2-201ENST00000414265 201 ntBASIC-1.41□□□□□ -2.64
NKX3-1Q99801 AC103706.3-201ENST00000636297 85 ntBASIC-1.41□□□□□ -2.64
NKX3-1Q99801 RNU6-706P-201ENST00000517229 104 ntBASIC-1.42□□□□□ -2.64
NKX3-1Q99801 AC138207.3-201ENST00000585289 166 ntBASIC-1.43□□□□□ -2.64
NKX3-1Q99801 hsa-mir-3607.1-201ENST00000637229 79 ntBASIC-1.44□□□□□ -2.64
NKX3-1Q99801 Y_RNA.69-201ENST00000362885 109 ntBASIC-1.45□□□□□ -2.64
NKX3-1Q99801 Y_RNA.139-201ENST00000363464 102 ntBASIC-1.46□□□□□ -2.64
NKX3-1Q99801 RNU7-160P-201ENST00000516660 62 ntBASIC-1.46□□□□□ -2.64
NKX3-1Q99801 RNU6-79P-201ENST00000362511 107 ntBASIC-1.47□□□□□ -2.64
NKX3-1Q99801 SNORA27.2-201ENST00000363365 126 ntBASIC-1.47□□□□□ -2.64
NKX3-1Q99801 Y_RNA.386-201ENST00000383913 105 ntBASIC-1.47□□□□□ -2.64
NKX3-1Q99801 MIR23C-201ENST00000579846 100 ntBASIC-1.47□□□□□ -2.64
NKX3-1Q99801 RNU6-940P-201ENST00000363433 104 ntBASIC-1.48□□□□□ -2.65
NKX3-1Q99801 RNU6-563P-201ENST00000364872 108 ntBASIC-1.48□□□□□ -2.65
NKX3-1Q99801 AC120024.2-201ENST00000576526 175 ntBASIC-1.48□□□□□ -2.65
NKX3-1Q99801 MIR466-201ENST00000580653 84 ntBASIC-1.48□□□□□ -2.65
NKX3-1Q99801 Y_RNA.181-201ENST00000363872 101 ntBASIC-1.49□□□□□ -2.65
NKX3-1Q99801 Y_RNA.340-201ENST00000365330 92 ntBASIC-1.49□□□□□ -2.65
NKX3-1Q99801 RNA5SP180-201ENST00000516181 101 ntBASIC-1.49□□□□□ -2.65
NKX3-1Q99801 SNORA72.7-201ENST00000516349 94 ntBASIC-1.49□□□□□ -2.65
NKX3-1Q99801 SNORA40.16-201ENST00000517238 121 ntBASIC-1.49□□□□□ -2.65
NKX3-1Q99801 SNORA40B-201ENST00000385573 128 ntBASIC-1.51□□□□□ -2.65
NKX3-1Q99801 AC110620.1-201ENST00000416042 228 ntBASIC-1.51□□□□□ -2.65
NKX3-1Q99801 MIR6502-201ENST00000617296 76 ntBASIC-1.51□□□□□ -2.65
NKX3-1Q99801 AC114801.3-201ENST00000510231 177 ntBASIC-1.52□□□□□ -2.65
NKX3-1Q99801 MIR3938-201ENST00000582157 103 ntBASIC-1.52□□□□□ -2.65
NKX3-1Q99801 ST7-OT3_1.1-201ENST00000619607 74 ntBASIC-1.52□□□□□ -2.65
NKX3-1Q99801 RNU6-828P-201ENST00000364876 107 ntBASIC-1.53□□□□□ -2.65
NKX3-1Q99801 MIR1285-2-201ENST00000408311 88 ntBASIC-1.54□□□□□ -2.66
NKX3-1Q99801 HLA-S-202ENST00000425174 53 ntBASIC-1.54□□□□□ -2.66
NKX3-1Q99801 RNU7-119P-201ENST00000459279 63 ntBASIC-1.54□□□□□ -2.66
NKX3-1Q99801 RNY3P8-201ENST00000411366 126 ntBASIC-1.55□□□□□ -2.66
NKX3-1Q99801 RNU6-1206P-201ENST00000516339 103 ntBASIC-1.55□□□□□ -2.66
NKX3-1Q99801 AC013734.1-201ENST00000619329 111 ntBASIC-1.55□□□□□ -2.66
NKX3-1Q99801 Y_RNA.321-201ENST00000365149 102 ntBASIC-1.56□□□□□ -2.66
NKX3-1Q99801 MIR4520-1-201ENST00000582609 70 ntBASIC-1.57□□□□□ -2.66
NKX3-1Q99801 U4.2-201ENST00000618561 85 ntBASIC-1.57□□□□□ -2.66
NKX3-1Q99801 RNU6-471P-201ENST00000383944 106 ntBASIC-1.58□□□□□ -2.66
NKX3-1Q99801 Y_RNA.413-201ENST00000384007 102 ntBASIC-1.58□□□□□ -2.66
NKX3-1Q99801 RNU6-400P-201ENST00000391173 106 ntBASIC-1.58□□□□□ -2.66
NKX3-1Q99801 Y_RNA.754-201ENST00000476024 102 ntBASIC-1.58□□□□□ -2.66
NKX3-1Q99801 Y_RNA.790-201ENST00000614282 102 ntBASIC-1.58□□□□□ -2.66
NKX3-1Q99801 Y_RNA.782-201ENST00000614695 102 ntBASIC-1.58□□□□□ -2.66
NKX3-1Q99801 MIR1246-201ENST00000636535 73 ntBASIC-1.58□□□□□ -2.66
NKX3-1Q99801 RNU6-226P-201ENST00000363778 107 ntBASIC-1.59□□□□□ -2.66
NKX3-1Q99801 RNU6-520P-201ENST00000384717 104 ntBASIC-1.59□□□□□ -2.66
NKX3-1Q99801 MIR5591-201ENST00000578248 65 ntBASIC-1.59□□□□□ -2.66
NKX3-1Q99801 MIR4770-201ENST00000579149 58 ntBASIC-1.59□□□□□ -2.66
NKX3-1Q99801 MIR365A-201ENST00000362260 87 ntBASIC-1.6□□□□□ -2.67
NKX3-1Q99801 RNU6-1296P-201ENST00000383879 107 ntBASIC-1.61□□□□□ -2.67
NKX3-1Q99801 TRGJP-201ENST00000390338 61 ntAPPRIS P1 BASIC-1.61□□□□□ -2.67
NKX3-1Q99801 RNU6-638P-201ENST00000516582 104 ntBASIC-1.61□□□□□ -2.67
NKX3-1Q99801 MIR4441-201ENST00000582623 100 ntBASIC-1.61□□□□□ -2.67
NKX3-1Q99801 Y_RNA.781-201ENST00000620301 103 ntBASIC-1.62□□□□□ -2.67
NKX3-1Q99801 U6.97-201ENST00000636904 101 ntBASIC-1.62□□□□□ -2.67
NKX3-1Q99801 MIR4723-201ENST00000585070 81 ntBASIC-1.63□□□□□ -2.67
NKX3-1Q99801 RNU6-1079P-201ENST00000362861 110 ntBASIC-1.64□□□□□ -2.67
NKX3-1Q99801 MIR202-201ENST00000362219 110 ntBASIC-1.68□□□□□ -2.68
NKX3-1Q99801 Y_RNA.442-201ENST00000384131 102 ntBASIC-1.68□□□□□ -2.68
NKX3-1Q99801 RNU6-695P-201ENST00000391157 104 ntBASIC-1.68□□□□□ -2.68
NKX3-1Q99801 RNU6-530P-201ENST00000391180 107 ntBASIC-1.69□□□□□ -2.68
Retrieved 100 of 98,524 protein–RNA pairs in 182.7 ms