Protein–RNA interactions for Protein: Q96CM3

RPUSD4, Mitochondrial RNA pseudouridine synthase RPUSD4, humanhuman

Known RBP Predictions only

Length 377 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RPUSD4Q96CM3 Y_RNA.139-201ENST00000363464 102 ntBASIC-1.4□□□□□ -2.63
RPUSD4Q96CM3 Y_RNA.211-201ENST00000364164 101 ntBASIC-1.4□□□□□ -2.63
RPUSD4Q96CM3 Y_RNA.284-201ENST00000364806 102 ntBASIC-1.41□□□□□ -2.64
RPUSD4Q96CM3 Y_RNA.375-201ENST00000365625 101 ntBASIC-1.41□□□□□ -2.64
RPUSD4Q96CM3 RNU6-1241P-201ENST00000384536 107 ntBASIC-1.41□□□□□ -2.64
RPUSD4Q96CM3 RNU6-980P-201ENST00000516925 103 ntBASIC-1.41□□□□□ -2.64
RPUSD4Q96CM3 MIR664B-201ENST00000626756 61 ntBASIC-1.41□□□□□ -2.64
RPUSD4Q96CM3 SNORA27.2-201ENST00000363365 126 ntBASIC-1.42□□□□□ -2.64
RPUSD4Q96CM3 Y_RNA.564-201ENST00000384708 106 ntBASIC-1.42□□□□□ -2.64
RPUSD4Q96CM3 TRAJ9-201ENST00000390528 61 ntAPPRIS P1 BASIC-1.42□□□□□ -2.64
RPUSD4Q96CM3 HAR1A.1-201ENST00000459583 118 ntBASIC-1.42□□□□□ -2.64
RPUSD4Q96CM3 RNU6ATAC32P-201ENST00000516026 76 ntBASIC-1.42□□□□□ -2.64
RPUSD4Q96CM3 RNU6ATAC17P-201ENST00000516074 71 ntBASIC-1.42□□□□□ -2.64
RPUSD4Q96CM3 hsa-mir-4773-1.1-201ENST00000585225 78 ntBASIC-1.43□□□□□ -2.64
RPUSD4Q96CM3 Y_RNA.781-201ENST00000620301 103 ntBASIC-1.43□□□□□ -2.64
RPUSD4Q96CM3 RNU6-1034P-201ENST00000365335 101 ntBASIC-1.44□□□□□ -2.64
RPUSD4Q96CM3 Y_RNA.543-201ENST00000384649 107 ntBASIC-1.44□□□□□ -2.64
RPUSD4Q96CM3 MIR450A2-201ENST00000385022 100 ntBASIC-1.44□□□□□ -2.64
RPUSD4Q96CM3 MIR4666B-201ENST00000578142 81 ntBASIC-1.44□□□□□ -2.64
RPUSD4Q96CM3 MIR3134-201ENST00000579433 74 ntBASIC-1.44□□□□□ -2.64
RPUSD4Q96CM3 MIR23C-201ENST00000579846 100 ntBASIC-1.44□□□□□ -2.64
RPUSD4Q96CM3 LINC01984-201ENST00000583863 301 ntTSL 3 BASIC-1.44□□□□□ -2.64
RPUSD4Q96CM3 SNORD19B.1-201ENST00000630615 80 ntBASIC-1.44□□□□□ -2.64
RPUSD4Q96CM3 U2.22-201ENST00000636441 106 ntBASIC-1.44□□□□□ -2.64
RPUSD4Q96CM3 Y_RNA.94-201ENST00000363068 106 ntBASIC-1.45□□□□□ -2.64
RPUSD4Q96CM3 RNU6-242P-201ENST00000384359 107 ntBASIC-1.45□□□□□ -2.64
RPUSD4Q96CM3 RNU6-995P-201ENST00000391244 107 ntBASIC-1.45□□□□□ -2.64
RPUSD4Q96CM3 MIR409-201ENST00000362237 79 ntBASIC-1.46□□□□□ -2.64
RPUSD4Q96CM3 Y_RNA.69-201ENST00000362885 109 ntBASIC-1.46□□□□□ -2.64
RPUSD4Q96CM3 RNY4P30-201ENST00000410216 95 ntBASIC-1.46□□□□□ -2.64
RPUSD4Q96CM3 MIR202-201ENST00000362219 110 ntBASIC-1.47□□□□□ -2.64
RPUSD4Q96CM3 RNU6-810P-201ENST00000364001 107 ntBASIC-1.47□□□□□ -2.64
RPUSD4Q96CM3 RNU6-1276P-201ENST00000365372 104 ntBASIC-1.47□□□□□ -2.64
RPUSD4Q96CM3 MIR1285-2-201ENST00000408311 88 ntBASIC-1.47□□□□□ -2.64
RPUSD4Q96CM3 RNU6-70P-201ENST00000516438 60 ntBASIC-1.47□□□□□ -2.64
RPUSD4Q96CM3 MIRLET7A2-201ENST00000362105 72 ntBASIC-1.48□□□□□ -2.65
RPUSD4Q96CM3 SNORD60.1-201ENST00000362451 73 ntBASIC-1.48□□□□□ -2.65
RPUSD4Q96CM3 MIR154-201ENST00000385243 84 ntBASIC-1.48□□□□□ -2.65
RPUSD4Q96CM3 MIR1468-201ENST00000410600 86 ntBASIC-1.48□□□□□ -2.65
RPUSD4Q96CM3 RNU6-687P-201ENST00000516443 89 ntBASIC-1.48□□□□□ -2.65
RPUSD4Q96CM3 RNU6-787P-201ENST00000384032 107 ntBASIC-1.49□□□□□ -2.65
RPUSD4Q96CM3 Y_RNA.591-201ENST00000410228 104 ntBASIC-1.49□□□□□ -2.65
RPUSD4Q96CM3 RNU6-294P-201ENST00000364999 102 ntBASIC-1.5□□□□□ -2.65
RPUSD4Q96CM3 RNU6-68P-201ENST00000516576 104 ntBASIC-1.5□□□□□ -2.65
RPUSD4Q96CM3 RNA5SP405-201ENST00000363059 114 ntBASIC-1.51□□□□□ -2.65
RPUSD4Q96CM3 Y_RNA.369-201ENST00000365568 117 ntBASIC-1.51□□□□□ -2.65
RPUSD4Q96CM3 RNU6-895P-201ENST00000384125 103 ntBASIC-1.51□□□□□ -2.65
RPUSD4Q96CM3 RNU6-820P-201ENST00000384273 107 ntBASIC-1.51□□□□□ -2.65
RPUSD4Q96CM3 RNU6-520P-201ENST00000384717 104 ntBASIC-1.51□□□□□ -2.65
RPUSD4Q96CM3 MIR494-201ENST00000349529 81 ntBASIC-1.52□□□□□ -2.65
RPUSD4Q96CM3 RNU6-231P-201ENST00000517122 103 ntBASIC-1.52□□□□□ -2.65
RPUSD4Q96CM3 RNU6-92P-201ENST00000605893 104 ntBASIC-1.52□□□□□ -2.65
RPUSD4Q96CM3 RNU6-649P-201ENST00000384463 107 ntBASIC-1.53□□□□□ -2.65
RPUSD4Q96CM3 RNU6-542P-201ENST00000516405 103 ntBASIC-1.53□□□□□ -2.65
RPUSD4Q96CM3 SNORA40.16-201ENST00000517238 121 ntBASIC-1.53□□□□□ -2.65
RPUSD4Q96CM3 SNORD116.2-201ENST00000391251 93 ntBASIC-1.54□□□□□ -2.66
RPUSD4Q96CM3 MIR548N-201ENST00000408742 75 ntBASIC-1.54□□□□□ -2.66
RPUSD4Q96CM3 RNA5SP266-201ENST00000410273 108 ntBASIC-1.54□□□□□ -2.66
RPUSD4Q96CM3 TRAJ33-201ENST00000390504 57 ntAPPRIS P1 BASIC-1.55□□□□□ -2.66
RPUSD4Q96CM3 RNU6-118P-201ENST00000516552 102 ntBASIC-1.55□□□□□ -2.66
RPUSD4Q96CM3 MIR3139-201ENST00000579145 76 ntBASIC-1.55□□□□□ -2.66
RPUSD4Q96CM3 MIR7110-201ENST00000612638 86 ntBASIC-1.55□□□□□ -2.66
RPUSD4Q96CM3 CR2-207ENST00000640301 151 ntTSL 1 (best) BASIC-1.55□□□□□ -2.66
RPUSD4Q96CM3 Y_RNA.225-201ENST00000364326 97 ntBASIC-1.56□□□□□ -2.66
RPUSD4Q96CM3 SNORD113-3-201ENST00000364830 72 ntBASIC-1.56□□□□□ -2.66
RPUSD4Q96CM3 SNORD18C-201ENST00000362704 69 ntBASIC-1.57□□□□□ -2.66
RPUSD4Q96CM3 RNU6-1324P-201ENST00000384222 107 ntBASIC-1.57□□□□□ -2.66
RPUSD4Q96CM3 RNU6-411P-201ENST00000384451 107 ntBASIC-1.57□□□□□ -2.66
RPUSD4Q96CM3 AL078612.1-201ENST00000533009 150 ntTSL 5 BASIC-1.57□□□□□ -2.66
RPUSD4Q96CM3 RNU6-194P-201ENST00000363862 105 ntBASIC-1.58□□□□□ -2.66
RPUSD4Q96CM3 Y_RNA.349-201ENST00000365406 102 ntBASIC-1.58□□□□□ -2.66
RPUSD4Q96CM3 RNU6-1206P-201ENST00000516339 103 ntBASIC-1.58□□□□□ -2.66
RPUSD4Q96CM3 RNU7-160P-201ENST00000516660 62 ntBASIC-1.58□□□□□ -2.66
RPUSD4Q96CM3 MIR5582-201ENST00000579697 68 ntBASIC-1.58□□□□□ -2.66
RPUSD4Q96CM3 VTRNA2-1-201ENST00000602301 127 ntBASIC-1.58□□□□□ -2.66
RPUSD4Q96CM3 Y_RNA.81-201ENST00000362997 102 ntBASIC-1.59□□□□□ -2.66
RPUSD4Q96CM3 RNU6-912P-201ENST00000363800 104 ntBASIC-1.59□□□□□ -2.66
RPUSD4Q96CM3 RNU6-1047P-201ENST00000364418 107 ntBASIC-1.59□□□□□ -2.66
RPUSD4Q96CM3 RNU6-828P-201ENST00000364876 107 ntBASIC-1.59□□□□□ -2.66
RPUSD4Q96CM3 RNU6-530P-201ENST00000391180 107 ntBASIC-1.59□□□□□ -2.66
RPUSD4Q96CM3 RNU6-361P-201ENST00000364454 107 ntBASIC-1.6□□□□□ -2.67
RPUSD4Q96CM3 Y_RNA.443-201ENST00000384135 111 ntBASIC-1.6□□□□□ -2.67
RPUSD4Q96CM3 SNORA40B-201ENST00000385573 128 ntBASIC-1.6□□□□□ -2.67
RPUSD4Q96CM3 TRGJP-201ENST00000390338 61 ntAPPRIS P1 BASIC-1.6□□□□□ -2.67
RPUSD4Q96CM3 SNORA17.4-201ENST00000391287 132 ntBASIC-1.6□□□□□ -2.67
RPUSD4Q96CM3 AC097484.2-201ENST00000509147 251 ntBASIC-1.6□□□□□ -2.67
RPUSD4Q96CM3 MIR4441-201ENST00000582623 100 ntBASIC-1.6□□□□□ -2.67
RPUSD4Q96CM3 Y_RNA.321-201ENST00000365149 102 ntBASIC-1.61□□□□□ -2.67
RPUSD4Q96CM3 MIR548AJ2-201ENST00000408539 92 ntBASIC-1.61□□□□□ -2.67
RPUSD4Q96CM3 MIR4748-201ENST00000578076 82 ntBASIC-1.61□□□□□ -2.67
RPUSD4Q96CM3 U7.4-201ENST00000614961 63 ntBASIC-1.61□□□□□ -2.67
RPUSD4Q96CM3 SMAD5-AS1_3.1-201ENST00000614187 124 ntBASIC-1.62□□□□□ -2.67
RPUSD4Q96CM3 MIR365A-201ENST00000362260 87 ntBASIC-1.63□□□□□ -2.67
RPUSD4Q96CM3 RNU6-742P-201ENST00000365289 107 ntBASIC-1.63□□□□□ -2.67
RPUSD4Q96CM3 MT-TM-201ENST00000387377 68 ntBASIC-1.63□□□□□ -2.67
RPUSD4Q96CM3 RNU6-141P-201ENST00000410499 105 ntBASIC-1.63□□□□□ -2.67
RPUSD4Q96CM3 Y_RNA.647-201ENST00000459194 112 ntBASIC-1.63□□□□□ -2.67
RPUSD4Q96CM3 Y_RNA.640-201ENST00000459296 112 ntBASIC-1.63□□□□□ -2.67
RPUSD4Q96CM3 RNU6-122P-201ENST00000516818 107 ntBASIC-1.63□□□□□ -2.67
RPUSD4Q96CM3 Y_RNA.803-201ENST00000614432 112 ntBASIC-1.63□□□□□ -2.67
Retrieved 100 of 98,524 protein–RNA pairs in 256.5 ms