Protein–RNA interactions for Protein: P33076

CIITA, MHC class II transactivator, humanhuman

Predictions only

Length 1,130 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CIITAP33076 Y_RNA.181-201ENST00000363872 101 ntBASIC-0.69□□□□□ -2.52
CIITAP33076 MIR147A-201ENST00000385079 72 ntBASIC-0.69□□□□□ -2.52
CIITAP33076 SNORD63.1-201ENST00000516178 80 ntBASIC-0.69□□□□□ -2.52
CIITAP33076 SNORD115-33-201ENST00000363723 82 ntBASIC-0.7□□□□□ -2.52
CIITAP33076 AP002795.1-201ENST00000534879 84 ntBASIC-0.7□□□□□ -2.52
CIITAP33076 hsa-mir-3607.1-201ENST00000637229 79 ntBASIC-0.71□□□□□ -2.52
CIITAP33076 RNU6-471P-201ENST00000383944 106 ntBASIC-0.72□□□□□ -2.52
CIITAP33076 RNU6-122P-201ENST00000516818 107 ntBASIC-0.72□□□□□ -2.52
CIITAP33076 AC110620.1-201ENST00000416042 228 ntBASIC-0.73□□□□□ -2.53
CIITAP33076 RNA5SP180-201ENST00000516181 101 ntBASIC-0.73□□□□□ -2.53
CIITAP33076 U4.2-201ENST00000618561 85 ntBASIC-0.73□□□□□ -2.53
CIITAP33076 SPRY4-IT1_2.1-201ENST00000612613 121 ntBASIC-0.77□□□□□ -2.53
CIITAP33076 RNU6-172P-201ENST00000411000 93 ntBASIC-0.78□□□□□ -2.53
CIITAP33076 AL353691.2-201ENST00000443795 59 ntBASIC-0.78□□□□□ -2.53
CIITAP33076 MIR1246-201ENST00000636535 73 ntBASIC-0.78□□□□□ -2.53
CIITAP33076 RNU6-669P-201ENST00000365575 107 ntBASIC-0.79□□□□□ -2.54
CIITAP33076 RNU6-1267P-201ENST00000410747 107 ntBASIC-0.79□□□□□ -2.54
CIITAP33076 MIR6502-201ENST00000617296 76 ntBASIC-0.79□□□□□ -2.54
CIITAP33076 MIR198-201ENST00000637333 62 ntBASIC-0.79□□□□□ -2.54
CIITAP33076 RNU6-940P-201ENST00000363433 104 ntBASIC-0.8□□□□□ -2.54
CIITAP33076 MIR548AA1-201ENST00000384971 97 ntBASIC-0.8□□□□□ -2.54
CIITAP33076 RNU7-151P-201ENST00000516930 53 ntBASIC-0.81□□□□□ -2.54
CIITAP33076 RNU6-231P-201ENST00000517122 103 ntBASIC-0.81□□□□□ -2.54
CIITAP33076 MIR5591-201ENST00000578248 65 ntBASIC-0.81□□□□□ -2.54
CIITAP33076 MIR5683-201ENST00000636514 76 ntBASIC-0.81□□□□□ -2.54
CIITAP33076 RNU6-590P-201ENST00000365039 107 ntBASIC-0.82□□□□□ -2.54
CIITAP33076 AC139453.2-201ENST00000487255 133 ntBASIC-0.82□□□□□ -2.54
CIITAP33076 RNU6-706P-201ENST00000517229 104 ntBASIC-0.82□□□□□ -2.54
CIITAP33076 MIR520D-201ENST00000385002 87 ntBASIC-0.83□□□□□ -2.54
CIITAP33076 RNA5SP86-201ENST00000390869 98 ntBASIC-0.83□□□□□ -2.54
CIITAP33076 MIR548Q-201ENST00000408404 100 ntBASIC-0.83□□□□□ -2.54
CIITAP33076 HLA-S-202ENST00000425174 53 ntBASIC-0.83□□□□□ -2.54
CIITAP33076 MIR3165-201ENST00000579874 75 ntBASIC-0.83□□□□□ -2.54
CIITAP33076 MIR466-201ENST00000580653 84 ntBASIC-0.83□□□□□ -2.54
CIITAP33076 MIR7978-201ENST00000636158 59 ntBASIC-0.83□□□□□ -2.54
CIITAP33076 Y_RNA.413-201ENST00000384007 102 ntBASIC-0.84□□□□□ -2.54
CIITAP33076 MIR487B-201ENST00000385021 84 ntBASIC-0.84□□□□□ -2.54
CIITAP33076 MIR1207-201ENST00000408249 87 ntBASIC-0.84□□□□□ -2.54
CIITAP33076 Y_RNA.754-201ENST00000476024 102 ntBASIC-0.84□□□□□ -2.54
CIITAP33076 Y_RNA.790-201ENST00000614282 102 ntBASIC-0.84□□□□□ -2.54
CIITAP33076 Y_RNA.782-201ENST00000614695 102 ntBASIC-0.84□□□□□ -2.54
CIITAP33076 MIR579-201ENST00000385221 98 ntBASIC-0.85□□□□□ -2.55
CIITAP33076 MIR3938-201ENST00000582157 103 ntBASIC-0.85□□□□□ -2.55
CIITAP33076 MIR3170-201ENST00000582699 77 ntBASIC-0.85□□□□□ -2.55
CIITAP33076 TRAJ42-201ENST00000390495 66 ntAPPRIS P1 BASIC-0.86□□□□□ -2.55
CIITAP33076 MIR4520-1-201ENST00000582609 70 ntBASIC-0.86□□□□□ -2.55
CIITAP33076 MIR7110-201ENST00000612638 86 ntBASIC-0.86□□□□□ -2.55
CIITAP33076 ULK3-223ENST00000631115 126 ntTSL 5 BASIC-0.86□□□□□ -2.55
CIITAP33076 RNA5SP26-201ENST00000362406 119 ntBASIC-0.87□□□□□ -2.55
CIITAP33076 MIR1285-2-201ENST00000408311 88 ntBASIC-0.87□□□□□ -2.55
CIITAP33076 AC091912.2-201ENST00000624798 167 ntBASIC-0.87□□□□□ -2.55
CIITAP33076 MIR6874-201ENST00000635894 71 ntBASIC-0.87□□□□□ -2.55
CIITAP33076 MIR125B1-201ENST00000385236 88 ntBASIC-0.88□□□□□ -2.55
CIITAP33076 AC138207.3-201ENST00000585289 166 ntBASIC-0.88□□□□□ -2.55
CIITAP33076 MTRNR2L9-201ENST00000622562 75 ntBASIC-0.88□□□□□ -2.55
CIITAP33076 Y_RNA.55-201ENST00000362797 102 ntBASIC-0.89□□□□□ -2.55
CIITAP33076 Y_RNA.232-201ENST00000364369 96 ntBASIC-0.89□□□□□ -2.55
CIITAP33076 Y_RNA.340-201ENST00000365330 92 ntBASIC-0.89□□□□□ -2.55
CIITAP33076 RNU6-983P-201ENST00000516004 103 ntBASIC-0.89□□□□□ -2.55
CIITAP33076 MIR6818-201ENST00000621576 65 ntBASIC-0.89□□□□□ -2.55
CIITAP33076 RNU6-810P-201ENST00000364001 107 ntBASIC-0.9□□□□□ -2.55
CIITAP33076 RNU6-608P-201ENST00000383927 104 ntBASIC-0.91□□□□□ -2.56
CIITAP33076 MIR507-201ENST00000385234 94 ntBASIC-0.91□□□□□ -2.56
CIITAP33076 SNORD116.2-201ENST00000391251 93 ntBASIC-0.91□□□□□ -2.56
CIITAP33076 SNORA40.16-201ENST00000517238 121 ntBASIC-0.91□□□□□ -2.56
CIITAP33076 MIR4756-201ENST00000577874 78 ntBASIC-0.91□□□□□ -2.56
CIITAP33076 MIR4770-201ENST00000579149 58 ntBASIC-0.91□□□□□ -2.56
CIITAP33076 MIR4490-201ENST00000582647 84 ntBASIC-0.91□□□□□ -2.56
CIITAP33076 SNORD114-3-201ENST00000364969 75 ntBASIC-0.92□□□□□ -2.56
CIITAP33076 MIR4441-201ENST00000582623 100 ntBASIC-0.92□□□□□ -2.56
CIITAP33076 RNY4P27-201ENST00000363341 96 ntBASIC-0.93□□□□□ -2.56
CIITAP33076 Y_RNA.543-201ENST00000384649 107 ntBASIC-0.93□□□□□ -2.56
CIITAP33076 RNU6-258P-201ENST00000390884 101 ntBASIC-0.93□□□□□ -2.56
CIITAP33076 RNU6-995P-201ENST00000391244 107 ntBASIC-0.93□□□□□ -2.56
CIITAP33076 MIR365A-201ENST00000362260 87 ntBASIC-0.94□□□□□ -2.56
CIITAP33076 SNORD18.1-201ENST00000363807 70 ntBASIC-0.94□□□□□ -2.56
CIITAP33076 MIR29B1-201ENST00000385015 81 ntBASIC-0.94□□□□□ -2.56
CIITAP33076 MIR496-201ENST00000385226 102 ntBASIC-0.94□□□□□ -2.56
CIITAP33076 SNORA40B-201ENST00000385573 128 ntBASIC-0.94□□□□□ -2.56
CIITAP33076 RPL35AP4-201ENST00000412007 102 ntBASIC-0.94□□□□□ -2.56
CIITAP33076 AC125388.1-201ENST00000459631 156 ntBASIC-0.94□□□□□ -2.56
CIITAP33076 RNU6-1079P-201ENST00000362861 110 ntBASIC-0.95□□□□□ -2.56
CIITAP33076 RNU6-1111P-201ENST00000391118 107 ntBASIC-0.95□□□□□ -2.56
CIITAP33076 RNU7-119P-201ENST00000459279 63 ntBASIC-0.95□□□□□ -2.56
CIITAP33076 AC108019.1-201ENST00000512540 175 ntBASIC-0.95□□□□□ -2.56
CIITAP33076 Y_RNA.678-201ENST00000516408 96 ntBASIC-0.95□□□□□ -2.56
CIITAP33076 RNU7-160P-201ENST00000516660 62 ntBASIC-0.95□□□□□ -2.56
CIITAP33076 snoU83B.1-201ENST00000517136 88 ntBASIC-0.96□□□□□ -2.56
CIITAP33076 RNU6-446P-201ENST00000362827 106 ntBASIC-0.97□□□□□ -2.56
CIITAP33076 Y_RNA.69-201ENST00000362885 109 ntBASIC-0.97□□□□□ -2.56
CIITAP33076 RNU6-974P-201ENST00000384099 108 ntBASIC-0.97□□□□□ -2.56
CIITAP33076 Y_RNA.564-201ENST00000384708 106 ntBASIC-0.97□□□□□ -2.56
CIITAP33076 RNU6-520P-201ENST00000384717 104 ntBASIC-0.97□□□□□ -2.56
CIITAP33076 RNU6-118P-201ENST00000516552 102 ntBASIC-0.97□□□□□ -2.56
CIITAP33076 Y_RNA.684-201ENST00000516510 99 ntBASIC-0.98□□□□□ -2.57
CIITAP33076 Y_RNA.616-201ENST00000410835 95 ntBASIC-0.99□□□□□ -2.57
CIITAP33076 AC090616.4-201ENST00000448026 115 ntBASIC-0.99□□□□□ -2.57
CIITAP33076 RNU6-980P-201ENST00000516925 103 ntBASIC-0.99□□□□□ -2.57
CIITAP33076 Y_RNA.139-201ENST00000363464 102 ntBASIC-1□□□□□ -2.57
CIITAP33076 SNORD63.2-201ENST00000516303 64 ntBASIC-1□□□□□ -2.57
Retrieved 100 of 98,524 protein–RNA pairs in 28 ms