Protein–RNA interactions for Protein: O95639

CPSF4, Cleavage and polyadenylation specificity factor subunit 4, humanhuman

Known RBP Predictions only

Length 269 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF4O95639 Y_RNA.313-201ENST00000365095 103 ntBASIC-1.61□□□□□ -2.67
CPSF4O95639 RNU6-979P-201ENST00000383896 107 ntBASIC-1.61□□□□□ -2.67
CPSF4O95639 RNU6-995P-201ENST00000391244 107 ntBASIC-1.61□□□□□ -2.67
CPSF4O95639 VTRNA2-1-201ENST00000602301 127 ntBASIC-1.61□□□□□ -2.67
CPSF4O95639 Y_RNA.53-201ENST00000362765 102 ntBASIC-1.62□□□□□ -2.67
CPSF4O95639 RNU6-49P-201ENST00000384256 107 ntBASIC-1.62□□□□□ -2.67
CPSF4O95639 RNU6-695P-201ENST00000391157 104 ntBASIC-1.62□□□□□ -2.67
CPSF4O95639 RNU7-151P-201ENST00000516930 53 ntBASIC-1.62□□□□□ -2.67
CPSF4O95639 RNA5SP405-201ENST00000363059 114 ntBASIC-1.63□□□□□ -2.67
CPSF4O95639 Y_RNA.175-201ENST00000363794 111 ntBASIC-1.63□□□□□ -2.67
CPSF4O95639 RNU6-215P-201ENST00000365169 102 ntBASIC-1.63□□□□□ -2.67
CPSF4O95639 RNU6-895P-201ENST00000384125 103 ntBASIC-1.63□□□□□ -2.67
CPSF4O95639 SNORD116-24-201ENST00000384549 92 ntBASIC-1.63□□□□□ -2.67
CPSF4O95639 SNORD20-201ENST00000384550 80 ntBASIC-1.63□□□□□ -2.67
CPSF4O95639 MIR154-201ENST00000385243 84 ntBASIC-1.63□□□□□ -2.67
CPSF4O95639 RNU6-70P-201ENST00000516438 60 ntBASIC-1.63□□□□□ -2.67
CPSF4O95639 RNU6-919P-201ENST00000516731 104 ntBASIC-1.63□□□□□ -2.67
CPSF4O95639 Y_RNA.204-201ENST00000364112 102 ntBASIC-1.64□□□□□ -2.67
CPSF4O95639 MIR579-201ENST00000385221 98 ntBASIC-1.64□□□□□ -2.67
CPSF4O95639 AL606753.1-201ENST00000427435 87 ntBASIC-1.64□□□□□ -2.67
CPSF4O95639 MIR4712-201ENST00000583750 82 ntBASIC-1.64□□□□□ -2.67
CPSF4O95639 ST7-OT3_1.1-201ENST00000619607 74 ntBASIC-1.64□□□□□ -2.67
CPSF4O95639 RNU6-172P-201ENST00000411000 93 ntBASIC-1.65□□□□□ -2.67
CPSF4O95639 Y_RNA.781-201ENST00000620301 103 ntBASIC-1.65□□□□□ -2.67
CPSF4O95639 MTRNR2L9-201ENST00000622562 75 ntBASIC-1.65□□□□□ -2.67
CPSF4O95639 Y_RNA.103-201ENST00000363171 102 ntBASIC-1.66□□□□□ -2.68
CPSF4O95639 RNU7-171P-201ENST00000459581 62 ntBASIC-1.66□□□□□ -2.68
CPSF4O95639 SNORD63.2-201ENST00000516303 64 ntBASIC-1.66□□□□□ -2.68
CPSF4O95639 MIR1245B-201ENST00000636115 69 ntBASIC-1.66□□□□□ -2.68
CPSF4O95639 CR2-207ENST00000640301 151 ntTSL 1 (best) BASIC-1.66□□□□□ -2.68
CPSF4O95639 SNORA27.2-201ENST00000363365 126 ntBASIC-1.67□□□□□ -2.68
CPSF4O95639 Y_RNA.211-201ENST00000364164 101 ntBASIC-1.67□□□□□ -2.68
CPSF4O95639 RNU6-669P-201ENST00000365575 107 ntBASIC-1.67□□□□□ -2.68
CPSF4O95639 MIR7978-201ENST00000636158 59 ntBASIC-1.67□□□□□ -2.68
CPSF4O95639 RNU6-194P-201ENST00000363862 105 ntBASIC-1.68□□□□□ -2.68
CPSF4O95639 SNORD115-31-201ENST00000365318 82 ntBASIC-1.68□□□□□ -2.68
CPSF4O95639 RNA5SP89-201ENST00000410300 108 ntBASIC-1.69□□□□□ -2.68
CPSF4O95639 RNU6-789P-201ENST00000517105 102 ntBASIC-1.69□□□□□ -2.68
CPSF4O95639 MIR125B1-201ENST00000385236 88 ntBASIC-1.7□□□□□ -2.68
CPSF4O95639 MIR3123-201ENST00000583417 75 ntBASIC-1.7□□□□□ -2.68
CPSF4O95639 Y_RNA.788-201ENST00000622394 112 ntBASIC-1.7□□□□□ -2.68
CPSF4O95639 Y_RNA.94-201ENST00000363068 106 ntBASIC-1.71□□□□□ -2.68
CPSF4O95639 RNU6-44P-201ENST00000384045 107 ntBASIC-1.71□□□□□ -2.68
CPSF4O95639 MIR3134-201ENST00000579433 74 ntBASIC-1.71□□□□□ -2.68
CPSF4O95639 AC013734.1-201ENST00000619329 111 ntBASIC-1.71□□□□□ -2.68
CPSF4O95639 TARS-215ENST00000626210 201 ntTSL 5 BASIC-1.71□□□□□ -2.68
CPSF4O95639 RNU6-523P-201ENST00000516304 54 ntBASIC-1.72□□□□□ -2.68
CPSF4O95639 RNU6-542P-201ENST00000516405 103 ntBASIC-1.72□□□□□ -2.68
CPSF4O95639 RNY4-201ENST00000516507 96 ntBASIC-1.72□□□□□ -2.68
CPSF4O95639 AC005520.4-201ENST00000604337 90 ntBASIC-1.72□□□□□ -2.68
CPSF4O95639 RNU6-92P-201ENST00000605893 104 ntBASIC-1.72□□□□□ -2.68
CPSF4O95639 Y_RNA.291-201ENST00000364886 113 ntBASIC-1.73□□□□□ -2.69
CPSF4O95639 RNU6-841P-201ENST00000383872 107 ntBASIC-1.73□□□□□ -2.69
CPSF4O95639 RNU6-687P-201ENST00000516443 89 ntBASIC-1.73□□□□□ -2.69
CPSF4O95639 MIR494-201ENST00000349529 81 ntBASIC-1.74□□□□□ -2.69
CPSF4O95639 RNU6-1306P-201ENST00000365219 99 ntBASIC-1.74□□□□□ -2.69
CPSF4O95639 RNU6-1034P-201ENST00000365335 101 ntBASIC-1.74□□□□□ -2.69
CPSF4O95639 RNU6-242P-201ENST00000384359 107 ntBASIC-1.74□□□□□ -2.69
CPSF4O95639 TRAJ9-201ENST00000390528 61 ntAPPRIS P1 BASIC-1.74□□□□□ -2.69
CPSF4O95639 RNY4P30-201ENST00000410216 95 ntBASIC-1.74□□□□□ -2.69
CPSF4O95639 RNU6-1191P-201ENST00000516799 107 ntBASIC-1.74□□□□□ -2.69
CPSF4O95639 MIR548AI-201ENST00000579940 88 ntBASIC-1.74□□□□□ -2.69
CPSF4O95639 RNU6-974P-201ENST00000384099 108 ntBASIC-1.75□□□□□ -2.69
CPSF4O95639 Y_RNA.449-201ENST00000384187 102 ntBASIC-1.75□□□□□ -2.69
CPSF4O95639 Y_RNA.321-201ENST00000365149 102 ntBASIC-1.76□□□□□ -2.69
CPSF4O95639 RNU6-1276P-201ENST00000365372 104 ntBASIC-1.76□□□□□ -2.69
CPSF4O95639 RNY3P8-201ENST00000411366 126 ntBASIC-1.76□□□□□ -2.69
CPSF4O95639 U6.97-201ENST00000636904 101 ntBASIC-1.76□□□□□ -2.69
CPSF4O95639 Y_RNA.139-201ENST00000363464 102 ntBASIC-1.77□□□□□ -2.69
CPSF4O95639 MIR4666B-201ENST00000578142 81 ntBASIC-1.77□□□□□ -2.69
CPSF4O95639 MIR548AM-201ENST00000584298 74 ntBASIC-1.77□□□□□ -2.69
CPSF4O95639 SNORD60.1-201ENST00000362451 73 ntBASIC-1.78□□□□□ -2.69
CPSF4O95639 RNU6ATAC17P-201ENST00000516074 71 ntBASIC-1.78□□□□□ -2.69
CPSF4O95639 RNU7-160P-201ENST00000516660 62 ntBASIC-1.78□□□□□ -2.69
CPSF4O95639 MIR450A2-201ENST00000385022 100 ntBASIC-1.79□□□□□ -2.7
CPSF4O95639 MIR7110-201ENST00000612638 86 ntBASIC-1.79□□□□□ -2.7
CPSF4O95639 Y_RNA.69-201ENST00000362885 109 ntBASIC-1.8□□□□□ -2.7
CPSF4O95639 RNU6-411P-201ENST00000384451 107 ntBASIC-1.8□□□□□ -2.7
CPSF4O95639 Y_RNA.591-201ENST00000410228 104 ntBASIC-1.8□□□□□ -2.7
CPSF4O95639 AL078612.1-201ENST00000533009 150 ntTSL 5 BASIC-1.8□□□□□ -2.7
CPSF4O95639 SNORD19B.1-201ENST00000630615 80 ntBASIC-1.8□□□□□ -2.7
CPSF4O95639 RNU4-88P-201ENST00000411220 86 ntBASIC-1.81□□□□□ -2.7
CPSF4O95639 RNU6-810P-201ENST00000364001 107 ntBASIC-1.82□□□□□ -2.7
CPSF4O95639 RNU6-828P-201ENST00000364876 107 ntBASIC-1.82□□□□□ -2.7
CPSF4O95639 RNU6-787P-201ENST00000384032 107 ntBASIC-1.82□□□□□ -2.7
CPSF4O95639 RNU6-520P-201ENST00000384717 104 ntBASIC-1.82□□□□□ -2.7
CPSF4O95639 AL603908.1-201ENST00000406098 201 ntBASIC-1.82□□□□□ -2.7
CPSF4O95639 RNU6-1015P-201ENST00000517121 99 ntBASIC-1.82□□□□□ -2.7
CPSF4O95639 RNU6-231P-201ENST00000517122 103 ntBASIC-1.82□□□□□ -2.7
CPSF4O95639 Y_RNA.186-201ENST00000363899 92 ntBASIC-1.84□□□□□ -2.7
CPSF4O95639 RNU6-153P-201ENST00000364422 104 ntBASIC-1.84□□□□□ -2.7
CPSF4O95639 RNU6-294P-201ENST00000364999 102 ntBASIC-1.84□□□□□ -2.7
CPSF4O95639 Y_RNA.443-201ENST00000384135 111 ntBASIC-1.84□□□□□ -2.7
CPSF4O95639 SNORD116.2-201ENST00000391251 93 ntBASIC-1.84□□□□□ -2.7
CPSF4O95639 U7.4-201ENST00000614961 63 ntBASIC-1.85□□□□□ -2.71
CPSF4O95639 SNORD18C-201ENST00000362704 69 ntBASIC-1.86□□□□□ -2.71
CPSF4O95639 RNU6-634P-201ENST00000459134 106 ntBASIC-1.86□□□□□ -2.71
CPSF4O95639 Y_RNA.694-201ENST00000516677 117 ntBASIC-1.86□□□□□ -2.71
CPSF4O95639 RNU6-663P-201ENST00000391105 106 ntBASIC-1.87□□□□□ -2.71
CPSF4O95639 MIR202-201ENST00000362219 110 ntBASIC-1.88□□□□□ -2.71
Retrieved 100 of 98,524 protein–RNA pairs in 192.1 ms