Protein–RNA interactions for Protein: A6NC98

CCDC88B, Coiled-coil domain-containing protein 88B, humanhuman

Predictions only

Length 1,476 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88BA6NC98 MIR548X2-201ENST00000579776 100 ntBASIC-5.52□□□□□ -3.29
CCDC88BA6NC98 RNU6-1107P-201ENST00000364817 104 ntBASIC-5.53□□□□□ -3.3
CCDC88BA6NC98 MIR548F1-201ENST00000408667 84 ntBASIC-5.53□□□□□ -3.3
CCDC88BA6NC98 Y_RNA.93-201ENST00000363066 109 ntBASIC-5.54□□□□□ -3.3
CCDC88BA6NC98 MT-TL1-201ENST00000386347 75 ntBASIC-5.54□□□□□ -3.3
CCDC88BA6NC98 TRGJP-201ENST00000390338 61 ntAPPRIS P1 BASIC-5.56□□□□□ -3.3
CCDC88BA6NC98 Y_RNA.620-201ENST00000411009 88 ntBASIC-5.56□□□□□ -3.3
CCDC88BA6NC98 RNU6-109P-201ENST00000516364 107 ntBASIC-5.58□□□□□ -3.3
CCDC88BA6NC98 RNU6-184P-201ENST00000516514 107 ntBASIC-5.58□□□□□ -3.3
CCDC88BA6NC98 MIR548BB-201ENST00000626714 66 ntBASIC-5.58□□□□□ -3.3
CCDC88BA6NC98 MIR545-201ENST00000385085 106 ntBASIC-5.58□□□□□ -3.3
CCDC88BA6NC98 RNU6-1043P-201ENST00000410355 99 ntBASIC-5.58□□□□□ -3.3
CCDC88BA6NC98 RNU6-70P-201ENST00000516438 60 ntBASIC-5.58□□□□□ -3.3
CCDC88BA6NC98 MIR8062-201ENST00000621515 85 ntBASIC-5.59□□□□□ -3.3
CCDC88BA6NC98 Y_RNA.290-201ENST00000364879 114 ntBASIC-5.6□□□□□ -3.31
CCDC88BA6NC98 RNY3P1-201ENST00000365085 102 ntBASIC-5.6□□□□□ -3.31
CCDC88BA6NC98 SNORD116-22-201ENST00000384430 92 ntBASIC-5.6□□□□□ -3.31
CCDC88BA6NC98 Y_RNA.165-201ENST00000363721 102 ntBASIC-5.61□□□□□ -3.31
CCDC88BA6NC98 SNORD58.1-201ENST00000391313 66 ntBASIC-5.61□□□□□ -3.31
CCDC88BA6NC98 Y_RNA.717-201ENST00000517106 92 ntBASIC-5.61□□□□□ -3.31
CCDC88BA6NC98 RNU6-1015P-201ENST00000517121 99 ntBASIC-5.61□□□□□ -3.31
CCDC88BA6NC98 MIR3974-201ENST00000637126 96 ntBASIC-5.63□□□□□ -3.31
CCDC88BA6NC98 MIR1302-5-201ENST00000408164 150 ntBASIC-5.64□□□□□ -3.31
CCDC88BA6NC98 Y_RNA.611-201ENST00000410682 108 ntBASIC-5.64□□□□□ -3.31
CCDC88BA6NC98 RNU4-71P-201ENST00000516258 113 ntBASIC-5.64□□□□□ -3.31
CCDC88BA6NC98 SNORA25.5-201ENST00000363782 126 ntBASIC-5.64□□□□□ -3.31
CCDC88BA6NC98 RNU6-776P-201ENST00000364403 104 ntBASIC-5.64□□□□□ -3.31
CCDC88BA6NC98 RNU6-1022P-201ENST00000365049 104 ntBASIC-5.64□□□□□ -3.31
CCDC88BA6NC98 SCARNA15.1-201ENST00000516384 125 ntBASIC-5.66□□□□□ -3.32
CCDC88BA6NC98 RNU6-122P-201ENST00000516818 107 ntBASIC-5.66□□□□□ -3.32
CCDC88BA6NC98 MIR4801-201ENST00000582704 82 ntBASIC-5.66□□□□□ -3.32
CCDC88BA6NC98 AC072026.1-201ENST00000605023 201 ntBASIC-5.66□□□□□ -3.32
CCDC88BA6NC98 RNU7-107P-201ENST00000459121 61 ntBASIC-5.67□□□□□ -3.32
CCDC88BA6NC98 SNORD33.1-201ENST00000516213 88 ntBASIC-5.68□□□□□ -3.32
CCDC88BA6NC98 MIR4680-201ENST00000580906 66 ntBASIC-5.68□□□□□ -3.32
CCDC88BA6NC98 Y_RNA.200-201ENST00000364018 102 ntBASIC-5.69□□□□□ -3.32
CCDC88BA6NC98 MTND3P3-201ENST00000505004 126 ntBASIC-5.69□□□□□ -3.32
CCDC88BA6NC98 SNORA19-201ENST00000384737 128 ntBASIC-5.71□□□□□ -3.32
CCDC88BA6NC98 RNU6-635P-201ENST00000516651 102 ntBASIC-5.71□□□□□ -3.32
CCDC88BA6NC98 RNU6-916P-201ENST00000516088 109 ntBASIC-5.71□□□□□ -3.32
CCDC88BA6NC98 Y_RNA.20-201ENST00000362479 113 ntBASIC-5.72□□□□□ -3.33
CCDC88BA6NC98 Y_RNA.662-201ENST00000516028 97 ntBASIC-5.72□□□□□ -3.33
CCDC88BA6NC98 Y_RNA.818-201ENST00000618813 71 ntBASIC-5.72□□□□□ -3.33
CCDC88BA6NC98 RNU6-379P-201ENST00000363813 104 ntBASIC-5.73□□□□□ -3.33
CCDC88BA6NC98 SNORD42.2-201ENST00000365570 69 ntBASIC-5.73□□□□□ -3.33
CCDC88BA6NC98 SNORD116-18-201ENST00000383961 92 ntBASIC-5.73□□□□□ -3.33
CCDC88BA6NC98 RNU6-1137P-201ENST00000517073 99 ntBASIC-5.73□□□□□ -3.33
CCDC88BA6NC98 AC006160.2-201ENST00000637708 154 ntBASIC-5.74□□□□□ -3.33
CCDC88BA6NC98 RNU6-219P-201ENST00000364728 107 ntBASIC-5.75□□□□□ -3.33
CCDC88BA6NC98 MIR3914-2-201ENST00000637339 95 ntBASIC-5.75□□□□□ -3.33
CCDC88BA6NC98 Y_RNA.194-201ENST00000363985 102 ntBASIC-5.76□□□□□ -3.33
CCDC88BA6NC98 MIR569-201ENST00000385228 96 ntBASIC-5.76□□□□□ -3.33
CCDC88BA6NC98 Y_RNA.580-201ENST00000391004 95 ntBASIC-5.76□□□□□ -3.33
CCDC88BA6NC98 RNU6-979P-201ENST00000383896 107 ntBASIC-5.77□□□□□ -3.33
CCDC88BA6NC98 RNU6-474P-201ENST00000384243 107 ntBASIC-5.78□□□□□ -3.34
CCDC88BA6NC98 RNU6-985P-201ENST00000410182 104 ntBASIC-5.78□□□□□ -3.34
CCDC88BA6NC98 RNU6-497P-201ENST00000365316 104 ntBASIC-5.8□□□□□ -3.34
CCDC88BA6NC98 MTND4LP9-201ENST00000427694 174 ntBASIC-5.8□□□□□ -3.34
CCDC88BA6NC98 Y_RNA.722-201ENST00000517279 114 ntBASIC-5.8□□□□□ -3.34
CCDC88BA6NC98 U6.95-201ENST00000636931 70 ntBASIC-5.81□□□□□ -3.34
CCDC88BA6NC98 RNU6-1255P-201ENST00000363434 112 ntBASIC-5.82□□□□□ -3.34
CCDC88BA6NC98 Y_RNA.431-201ENST00000384086 102 ntBASIC-5.82□□□□□ -3.34
CCDC88BA6NC98 AC004792.1-201ENST00000614523 137 ntBASIC-5.82□□□□□ -3.34
CCDC88BA6NC98 SNORD116-21-201ENST00000384507 92 ntBASIC-5.83□□□□□ -3.34
CCDC88BA6NC98 RNU6-315P-201ENST00000362666 107 ntBASIC-5.84□□□□□ -3.34
CCDC88BA6NC98 MIR548H4-201ENST00000408689 111 ntBASIC-5.86□□□□□ -3.35
CCDC88BA6NC98 MIR548X-201ENST00000580069 75 ntBASIC-5.86□□□□□ -3.35
CCDC88BA6NC98 RNU6-797P-201ENST00000363101 109 ntBASIC-5.87□□□□□ -3.35
CCDC88BA6NC98 AL589823.1-201ENST00000429577 183 ntBASIC-5.87□□□□□ -3.35
CCDC88BA6NC98 RNU6-111P-201ENST00000517179 105 ntBASIC-5.87□□□□□ -3.35
CCDC88BA6NC98 MIR3938-201ENST00000582157 103 ntBASIC-5.87□□□□□ -3.35
CCDC88BA6NC98 RNU6-940P-201ENST00000363433 104 ntBASIC-5.88□□□□□ -3.35
CCDC88BA6NC98 Y_RNA.356-201ENST00000365475 113 ntBASIC-5.88□□□□□ -3.35
CCDC88BA6NC98 RNU6-1326P-201ENST00000391262 107 ntBASIC-5.89□□□□□ -3.35
CCDC88BA6NC98 RNU6-426P-201ENST00000516464 97 ntBASIC-5.89□□□□□ -3.35
CCDC88BA6NC98 U6atac.1-201ENST00000616025 117 ntBASIC-5.89□□□□□ -3.35
CCDC88BA6NC98 MIR2052-201ENST00000636055 55 ntBASIC-5.9□□□□□ -3.35
CCDC88BA6NC98 Y_RNA.565-201ENST00000384719 101 ntBASIC-5.9□□□□□ -3.35
CCDC88BA6NC98 Y_RNA.720-201ENST00000517166 92 ntBASIC-5.9□□□□□ -3.35
CCDC88BA6NC98 RNU6-411P-201ENST00000384451 107 ntBASIC-5.91□□□□□ -3.36
CCDC88BA6NC98 AL158828.1-201ENST00000438582 197 ntTSL 5 BASIC-5.91□□□□□ -3.36
CCDC88BA6NC98 Y_RNA.712-201ENST00000517011 92 ntBASIC-5.91□□□□□ -3.36
CCDC88BA6NC98 Y_RNA.318-201ENST00000365131 97 ntBASIC-5.93□□□□□ -3.36
CCDC88BA6NC98 SNORA40-201ENST00000388090 126 ntBASIC-5.94□□□□□ -3.36
CCDC88BA6NC98 RNU6-394P-201ENST00000410735 107 ntBASIC-5.94□□□□□ -3.36
CCDC88BA6NC98 RNU6-687P-201ENST00000516443 89 ntBASIC-5.94□□□□□ -3.36
CCDC88BA6NC98 MIR3128-201ENST00000581957 66 ntBASIC-5.94□□□□□ -3.36
CCDC88BA6NC98 Y_RNA.607-201ENST00000410597 98 ntBASIC-5.95□□□□□ -3.36
CCDC88BA6NC98 LMBR1-222ENST00000638959 93 ntTSL 5 BASIC-5.95□□□□□ -3.36
CCDC88BA6NC98 Y_RNA.345-201ENST00000365384 92 ntBASIC-5.96□□□□□ -3.36
CCDC88BA6NC98 MTATP8P1-201ENST00000467115 207 ntBASIC-5.96□□□□□ -3.36
CCDC88BA6NC98 Y_RNA.574-201ENST00000384766 95 ntBASIC-5.98□□□□□ -3.37
CCDC88BA6NC98 RNU6-907P-201ENST00000390924 102 ntBASIC-5.98□□□□□ -3.37
CCDC88BA6NC98 MIR3134-201ENST00000579433 74 ntBASIC-5.98□□□□□ -3.37
CCDC88BA6NC98 SNORA20.1-201ENST00000364790 130 ntBASIC-5.99□□□□□ -3.37
CCDC88BA6NC98 MIR4795-201ENST00000584182 89 ntBASIC-5.99□□□□□ -3.37
CCDC88BA6NC98 RNU6-255P-201ENST00000516957 105 ntBASIC-6□□□□□ -3.37
CCDC88BA6NC98 Y_RNA.15-201ENST00000362420 102 ntBASIC-6.01□□□□□ -3.37
CCDC88BA6NC98 Y_RNA.216-201ENST00000364205 93 ntBASIC-6.01□□□□□ -3.37
CCDC88BA6NC98 Y_RNA.406-201ENST00000383984 100 ntBASIC-6.01□□□□□ -3.37
Retrieved 100 of 98,524 protein–RNA pairs in 191.6 ms