Protein–RNA interactions for Protein: Q9P1Q0

VPS54, Vacuolar protein sorting-associated protein 54, humanhuman

Predictions only

Length 977 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS54Q9P1Q0 SNORD45A-201ENST00000384512 84 ntBASIC-1.36□□□□□ -2.63
VPS54Q9P1Q0 MIR630-201ENST00000384957 97 ntBASIC-1.36□□□□□ -2.63
VPS54Q9P1Q0 IGLL4P-201ENST00000614590 133 ntBASIC-1.36□□□□□ -2.63
VPS54Q9P1Q0 RNU6-698P-201ENST00000363523 107 ntBASIC-1.37□□□□□ -2.63
VPS54Q9P1Q0 RNY1P1-201ENST00000364372 112 ntBASIC-1.37□□□□□ -2.63
VPS54Q9P1Q0 RNU6-34P-201ENST00000364874 107 ntBASIC-1.37□□□□□ -2.63
VPS54Q9P1Q0 Y_RNA.426-201ENST00000384068 113 ntBASIC-1.37□□□□□ -2.63
VPS54Q9P1Q0 RNU6-1081P-201ENST00000384537 107 ntBASIC-1.37□□□□□ -2.63
VPS54Q9P1Q0 Y_RNA.607-201ENST00000410597 98 ntBASIC-1.37□□□□□ -2.63
VPS54Q9P1Q0 RNU6-983P-201ENST00000516004 103 ntBASIC-1.37□□□□□ -2.63
VPS54Q9P1Q0 RNU6-1262P-201ENST00000516217 96 ntBASIC-1.37□□□□□ -2.63
VPS54Q9P1Q0 MIR4490-201ENST00000582647 84 ntBASIC-1.37□□□□□ -2.63
VPS54Q9P1Q0 MIR6874-201ENST00000635894 71 ntBASIC-1.37□□□□□ -2.63
VPS54Q9P1Q0 MIR1297-201ENST00000637311 77 ntBASIC-1.37□□□□□ -2.63
VPS54Q9P1Q0 SNORD113.1-201ENST00000363280 73 ntBASIC-1.38□□□□□ -2.63
VPS54Q9P1Q0 RNU6-598P-201ENST00000364017 105 ntBASIC-1.38□□□□□ -2.63
VPS54Q9P1Q0 Y_RNA.316-201ENST00000365118 111 ntBASIC-1.38□□□□□ -2.63
VPS54Q9P1Q0 RNU6-576P-201ENST00000390854 102 ntBASIC-1.38□□□□□ -2.63
VPS54Q9P1Q0 MIR5588-201ENST00000581890 63 ntBASIC-1.38□□□□□ -2.63
VPS54Q9P1Q0 MIR4441-201ENST00000582623 100 ntBASIC-1.39□□□□□ -2.63
VPS54Q9P1Q0 MIR365A-201ENST00000362260 87 ntBASIC-1.4□□□□□ -2.63
VPS54Q9P1Q0 SNORD18.1-201ENST00000363807 70 ntBASIC-1.4□□□□□ -2.63
VPS54Q9P1Q0 RNU6-979P-201ENST00000383896 107 ntBASIC-1.4□□□□□ -2.63
VPS54Q9P1Q0 RNU6-696P-201ENST00000390834 107 ntBASIC-1.4□□□□□ -2.63
VPS54Q9P1Q0 AC090616.4-201ENST00000448026 115 ntBASIC-1.4□□□□□ -2.63
VPS54Q9P1Q0 U2.18-201ENST00000622185 84 ntBASIC-1.4□□□□□ -2.63
VPS54Q9P1Q0 RNU6-668P-201ENST00000364180 107 ntBASIC-1.41□□□□□ -2.64
VPS54Q9P1Q0 MIR601-201ENST00000385256 79 ntBASIC-1.41□□□□□ -2.64
VPS54Q9P1Q0 SNX3P1X-201ENST00000414887 175 ntBASIC-1.41□□□□□ -2.64
VPS54Q9P1Q0 MTND4LP1-201ENST00000446263 157 ntBASIC-1.41□□□□□ -2.64
VPS54Q9P1Q0 RNY4P30-201ENST00000410216 95 ntBASIC-1.42□□□□□ -2.64
VPS54Q9P1Q0 RNU6-315P-201ENST00000362666 107 ntBASIC-1.43□□□□□ -2.64
VPS54Q9P1Q0 Y_RNA.543-201ENST00000384649 107 ntBASIC-1.43□□□□□ -2.64
VPS54Q9P1Q0 MIR487B-201ENST00000385021 84 ntBASIC-1.43□□□□□ -2.64
VPS54Q9P1Q0 SNORD113-2-201ENST00000391082 72 ntBASIC-1.43□□□□□ -2.64
VPS54Q9P1Q0 RNU6-630P-201ENST00000391258 106 ntBASIC-1.43□□□□□ -2.64
VPS54Q9P1Q0 MIR548H1-201ENST00000408610 102 ntBASIC-1.43□□□□□ -2.64
VPS54Q9P1Q0 RNU6-380P-201ENST00000410207 107 ntBASIC-1.43□□□□□ -2.64
VPS54Q9P1Q0 MIR520D-201ENST00000385002 87 ntBASIC-1.44□□□□□ -2.64
VPS54Q9P1Q0 RNU6-406P-201ENST00000516470 107 ntBASIC-1.44□□□□□ -2.64
VPS54Q9P1Q0 RNU6-789P-201ENST00000517105 102 ntBASIC-1.44□□□□□ -2.64
VPS54Q9P1Q0 MIR8053-201ENST00000613344 75 ntBASIC-1.44□□□□□ -2.64
VPS54Q9P1Q0 MIR198-201ENST00000637333 62 ntBASIC-1.44□□□□□ -2.64
VPS54Q9P1Q0 MIR494-201ENST00000349529 81 ntBASIC-1.45□□□□□ -2.64
VPS54Q9P1Q0 RNU6-164P-201ENST00000364604 103 ntBASIC-1.45□□□□□ -2.64
VPS54Q9P1Q0 Y_RNA.616-201ENST00000410835 95 ntBASIC-1.45□□□□□ -2.64
VPS54Q9P1Q0 RNU6-228P-201ENST00000362700 106 ntBASIC-1.46□□□□□ -2.64
VPS54Q9P1Q0 Y_RNA.788-201ENST00000622394 112 ntBASIC-1.46□□□□□ -2.64
VPS54Q9P1Q0 RNU6-1094P-201ENST00000362416 104 ntBASIC-1.47□□□□□ -2.64
VPS54Q9P1Q0 RNU6-1241P-201ENST00000384536 107 ntBASIC-1.47□□□□□ -2.64
VPS54Q9P1Q0 SNORA41B-201ENST00000384785 128 ntBASIC-1.47□□□□□ -2.64
VPS54Q9P1Q0 Y_RNA.603-201ENST00000410571 108 ntBASIC-1.47□□□□□ -2.64
VPS54Q9P1Q0 MIR4712-201ENST00000583750 82 ntBASIC-1.47□□□□□ -2.64
VPS54Q9P1Q0 MIR429-201ENST00000362106 83 ntBASIC-1.48□□□□□ -2.65
VPS54Q9P1Q0 RNA5SP215-201ENST00000363440 122 ntBASIC-1.48□□□□□ -2.65
VPS54Q9P1Q0 Y_RNA.313-201ENST00000365095 103 ntBASIC-1.48□□□□□ -2.65
VPS54Q9P1Q0 RNU6-608P-201ENST00000383927 104 ntBASIC-1.48□□□□□ -2.65
VPS54Q9P1Q0 RNU7-171P-201ENST00000459581 62 ntBASIC-1.48□□□□□ -2.65
VPS54Q9P1Q0 Y_RNA.678-201ENST00000516408 96 ntBASIC-1.48□□□□□ -2.65
VPS54Q9P1Q0 U4.2-201ENST00000618561 85 ntBASIC-1.48□□□□□ -2.65
VPS54Q9P1Q0 U2.22-201ENST00000636441 106 ntBASIC-1.48□□□□□ -2.65
VPS54Q9P1Q0 Y_RNA.55-201ENST00000362797 102 ntBASIC-1.49□□□□□ -2.65
VPS54Q9P1Q0 RNU6-70P-201ENST00000516438 60 ntBASIC-1.49□□□□□ -2.65
VPS54Q9P1Q0 Y_RNA.223-201ENST00000364290 113 ntBASIC-1.5□□□□□ -2.65
VPS54Q9P1Q0 Y_RNA.291-201ENST00000364886 113 ntBASIC-1.5□□□□□ -2.65
VPS54Q9P1Q0 SNORD116-24-201ENST00000384549 92 ntBASIC-1.5□□□□□ -2.65
VPS54Q9P1Q0 AC108019.1-201ENST00000512540 175 ntBASIC-1.5□□□□□ -2.65
VPS54Q9P1Q0 MIR1245B-201ENST00000636115 69 ntBASIC-1.5□□□□□ -2.65
VPS54Q9P1Q0 RNU6-1267P-201ENST00000410747 107 ntBASIC-1.51□□□□□ -2.65
VPS54Q9P1Q0 MIR548AI-201ENST00000579940 88 ntBASIC-1.51□□□□□ -2.65
VPS54Q9P1Q0 Y_RNA.94-201ENST00000363068 106 ntBASIC-1.52□□□□□ -2.65
VPS54Q9P1Q0 RNU6-153P-201ENST00000364422 104 ntBASIC-1.52□□□□□ -2.65
VPS54Q9P1Q0 SNORD115-31-201ENST00000365318 82 ntBASIC-1.52□□□□□ -2.65
VPS54Q9P1Q0 Y_RNA.413-201ENST00000384007 102 ntBASIC-1.52□□□□□ -2.65
VPS54Q9P1Q0 SNORD116-16-201ENST00000384533 92 ntBASIC-1.52□□□□□ -2.65
VPS54Q9P1Q0 Y_RNA.754-201ENST00000476024 102 ntBASIC-1.52□□□□□ -2.65
VPS54Q9P1Q0 MIR4756-201ENST00000577874 78 ntBASIC-1.52□□□□□ -2.65
VPS54Q9P1Q0 MIR3134-201ENST00000579433 74 ntBASIC-1.52□□□□□ -2.65
VPS54Q9P1Q0 Y_RNA.790-201ENST00000614282 102 ntBASIC-1.52□□□□□ -2.65
VPS54Q9P1Q0 Y_RNA.782-201ENST00000614695 102 ntBASIC-1.52□□□□□ -2.65
VPS54Q9P1Q0 MIR154-201ENST00000385243 84 ntBASIC-1.53□□□□□ -2.65
VPS54Q9P1Q0 SNORD1B-201ENST00000363091 84 ntBASIC-1.54□□□□□ -2.66
VPS54Q9P1Q0 MIR1468-201ENST00000410600 86 ntBASIC-1.54□□□□□ -2.66
VPS54Q9P1Q0 MIR3170-201ENST00000582699 77 ntBASIC-1.54□□□□□ -2.66
VPS54Q9P1Q0 Y_RNA.225-201ENST00000364326 97 ntBASIC-1.55□□□□□ -2.66
VPS54Q9P1Q0 RNU6ATAC17P-201ENST00000516074 71 ntBASIC-1.55□□□□□ -2.66
VPS54Q9P1Q0 MIR664B-201ENST00000626756 61 ntBASIC-1.55□□□□□ -2.66
VPS54Q9P1Q0 RNY4P27-201ENST00000363341 96 ntBASIC-1.56□□□□□ -2.66
VPS54Q9P1Q0 RNU6-1276P-201ENST00000365372 104 ntBASIC-1.56□□□□□ -2.66
VPS54Q9P1Q0 Y_RNA.375-201ENST00000365625 101 ntBASIC-1.57□□□□□ -2.66
VPS54Q9P1Q0 RNU6-787P-201ENST00000384032 107 ntBASIC-1.57□□□□□ -2.66
VPS54Q9P1Q0 RNU6-895P-201ENST00000384125 103 ntBASIC-1.57□□□□□ -2.66
VPS54Q9P1Q0 AC018880.2-201ENST00000414265 201 ntBASIC-1.57□□□□□ -2.66
VPS54Q9P1Q0 RNU6ATAC32P-201ENST00000516026 76 ntBASIC-1.57□□□□□ -2.66
VPS54Q9P1Q0 RNU6-294P-201ENST00000364999 102 ntBASIC-1.58□□□□□ -2.66
VPS54Q9P1Q0 Y_RNA.502-201ENST00000384478 113 ntBASIC-1.58□□□□□ -2.66
VPS54Q9P1Q0 RNU6-258P-201ENST00000390884 101 ntBASIC-1.58□□□□□ -2.66
VPS54Q9P1Q0 Y_RNA.103-201ENST00000363171 102 ntBASIC-1.59□□□□□ -2.66
VPS54Q9P1Q0 RNU6-242P-201ENST00000384359 107 ntBASIC-1.59□□□□□ -2.66
VPS54Q9P1Q0 RNU6-1152P-201ENST00000384576 107 ntBASIC-1.59□□□□□ -2.66
Retrieved 100 of 98,524 protein–RNA pairs in 1251.2 ms