Protein–RNA interactions for Protein: Q9HD42

CHMP1A, Charged multivesicular body protein 1a, humanhuman

Predicted RBP Predictions only

Length 196 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP1AQ9HD42 RNU6-687P-201ENST00000516443 89 ntBASIC-1.42□□□□□ -2.64
CHMP1AQ9HD42 RNY1P9-201ENST00000532431 109 ntBASIC-1.42□□□□□ -2.64
CHMP1AQ9HD42 RNU6-598P-201ENST00000364017 105 ntBASIC-1.43□□□□□ -2.64
CHMP1AQ9HD42 Y_RNA.375-201ENST00000365625 101 ntBASIC-1.43□□□□□ -2.64
CHMP1AQ9HD42 RNU6-1157P-201ENST00000384456 106 ntBASIC-1.43□□□□□ -2.64
CHMP1AQ9HD42 MIR507-201ENST00000385234 94 ntBASIC-1.43□□□□□ -2.64
CHMP1AQ9HD42 Y_RNA.610-201ENST00000410681 103 ntBASIC-1.43□□□□□ -2.64
CHMP1AQ9HD42 MIR6818-201ENST00000621576 65 ntBASIC-1.43□□□□□ -2.64
CHMP1AQ9HD42 RNA5SP26-201ENST00000362406 119 ntBASIC-1.44□□□□□ -2.64
CHMP1AQ9HD42 SNORD73B-201ENST00000364394 72 ntBASIC-1.44□□□□□ -2.64
CHMP1AQ9HD42 RNA5SP173-201ENST00000364857 136 ntBASIC-1.45□□□□□ -2.64
CHMP1AQ9HD42 MIR548Q-201ENST00000408404 100 ntBASIC-1.45□□□□□ -2.64
CHMP1AQ9HD42 SNORD116-16-201ENST00000384533 92 ntBASIC-1.46□□□□□ -2.64
CHMP1AQ9HD42 SNORD57-201ENST00000448188 72 ntBASIC-1.46□□□□□ -2.64
CHMP1AQ9HD42 MIR548AX-201ENST00000580117 73 ntBASIC-1.46□□□□□ -2.64
CHMP1AQ9HD42 MIR4490-201ENST00000582647 84 ntBASIC-1.46□□□□□ -2.64
CHMP1AQ9HD42 SNORA41B-201ENST00000384785 128 ntBASIC-1.47□□□□□ -2.64
CHMP1AQ9HD42 ULK3-223ENST00000631115 126 ntTSL 5 BASIC-1.48□□□□□ -2.65
CHMP1AQ9HD42 Y_RNA.374-201ENST00000365606 101 ntBASIC-1.49□□□□□ -2.65
CHMP1AQ9HD42 RNU6-411P-201ENST00000384451 107 ntBASIC-1.49□□□□□ -2.65
CHMP1AQ9HD42 SCARNA17-201ENST00000516183 144 ntBASIC-1.49□□□□□ -2.65
CHMP1AQ9HD42 U7.4-201ENST00000614961 63 ntBASIC-1.49□□□□□ -2.65
CHMP1AQ9HD42 U2.18-201ENST00000622185 84 ntBASIC-1.49□□□□□ -2.65
CHMP1AQ9HD42 RNU7-134P-201ENST00000458997 64 ntBASIC-1.5□□□□□ -2.65
CHMP1AQ9HD42 RNU6-1255P-201ENST00000363434 112 ntBASIC-1.51□□□□□ -2.65
CHMP1AQ9HD42 RNY4P29-201ENST00000410801 97 ntBASIC-1.51□□□□□ -2.65
CHMP1AQ9HD42 RNU6-1015P-201ENST00000517121 99 ntBASIC-1.51□□□□□ -2.65
CHMP1AQ9HD42 MIR3202-2-201ENST00000635980 79 ntBASIC-1.51□□□□□ -2.65
CHMP1AQ9HD42 SNORD114-15-201ENST00000364687 72 ntBASIC-1.52□□□□□ -2.65
CHMP1AQ9HD42 RNU6-573P-201ENST00000383938 106 ntBASIC-1.52□□□□□ -2.65
CHMP1AQ9HD42 RPL35AP4-201ENST00000412007 102 ntBASIC-1.53□□□□□ -2.65
CHMP1AQ9HD42 Y_RNA.388-201ENST00000383919 113 ntBASIC-1.54□□□□□ -2.66
CHMP1AQ9HD42 SNORA26.2-201ENST00000390922 122 ntBASIC-1.54□□□□□ -2.66
CHMP1AQ9HD42 RNU6-630P-201ENST00000391258 106 ntBASIC-1.54□□□□□ -2.66
CHMP1AQ9HD42 MIR378F-201ENST00000578143 78 ntBASIC-1.55□□□□□ -2.66
CHMP1AQ9HD42 Y_RNA.433-201ENST00000384089 102 ntBASIC-1.56□□□□□ -2.66
CHMP1AQ9HD42 RNU6-1124P-201ENST00000384169 107 ntBASIC-1.56□□□□□ -2.66
CHMP1AQ9HD42 SNORD1B-201ENST00000363091 84 ntBASIC-1.57□□□□□ -2.66
CHMP1AQ9HD42 RNU6-576P-201ENST00000390854 102 ntBASIC-1.57□□□□□ -2.66
CHMP1AQ9HD42 RNU6-542P-201ENST00000516405 103 ntBASIC-1.57□□□□□ -2.66
CHMP1AQ9HD42 Y_RNA.43-201ENST00000362670 111 ntBASIC-1.58□□□□□ -2.66
CHMP1AQ9HD42 RNU6-228P-201ENST00000362700 106 ntBASIC-1.58□□□□□ -2.66
CHMP1AQ9HD42 AC090616.4-201ENST00000448026 115 ntBASIC-1.58□□□□□ -2.66
CHMP1AQ9HD42 RNU6-634P-201ENST00000459134 106 ntBASIC-1.58□□□□□ -2.66
CHMP1AQ9HD42 RNA5SP395-201ENST00000516567 118 ntBASIC-1.58□□□□□ -2.66
CHMP1AQ9HD42 MIR6086-201ENST00000638065 55 ntBASIC-1.58□□□□□ -2.66
CHMP1AQ9HD42 MIR548AA1-201ENST00000384971 97 ntBASIC-1.59□□□□□ -2.66
CHMP1AQ9HD42 MIR520D-201ENST00000385002 87 ntBASIC-1.59□□□□□ -2.66
CHMP1AQ9HD42 MIR1255A-201ENST00000408338 113 ntBASIC-1.59□□□□□ -2.66
CHMP1AQ9HD42 RNU6-540P-201ENST00000384622 101 ntBASIC-1.6□□□□□ -2.67
CHMP1AQ9HD42 RNU6-1267P-201ENST00000410747 107 ntBASIC-1.6□□□□□ -2.67
CHMP1AQ9HD42 RNU6-164P-201ENST00000364604 103 ntBASIC-1.61□□□□□ -2.67
CHMP1AQ9HD42 RNU6-608P-201ENST00000383927 104 ntBASIC-1.61□□□□□ -2.67
CHMP1AQ9HD42 RNU6-857P-201ENST00000515893 110 ntBASIC-1.61□□□□□ -2.67
CHMP1AQ9HD42 SCARNA21.1-201ENST00000515996 128 ntBASIC-1.61□□□□□ -2.67
CHMP1AQ9HD42 RNU6-523P-201ENST00000516304 54 ntBASIC-1.61□□□□□ -2.67
CHMP1AQ9HD42 TRAJ9-201ENST00000390528 61 ntAPPRIS P1 BASIC-1.62□□□□□ -2.67
CHMP1AQ9HD42 RNU6-279P-201ENST00000391297 101 ntBASIC-1.62□□□□□ -2.67
CHMP1AQ9HD42 Y_RNA.443-201ENST00000384135 111 ntBASIC-1.63□□□□□ -2.67
CHMP1AQ9HD42 MIR3170-201ENST00000582699 77 ntBASIC-1.63□□□□□ -2.67
CHMP1AQ9HD42 SPRY4-IT1_2.1-201ENST00000612613 121 ntBASIC-1.63□□□□□ -2.67
CHMP1AQ9HD42 RNU6-24P-201ENST00000384440 107 ntBASIC-1.64□□□□□ -2.67
CHMP1AQ9HD42 RNU6-92P-201ENST00000605893 104 ntBASIC-1.64□□□□□ -2.67
CHMP1AQ9HD42 RNU6-663P-201ENST00000391105 106 ntBASIC-1.65□□□□□ -2.67
CHMP1AQ9HD42 Y_RNA.603-201ENST00000410571 108 ntBASIC-1.65□□□□□ -2.67
CHMP1AQ9HD42 Y_RNA.545-201ENST00000384652 105 ntBASIC-1.66□□□□□ -2.68
CHMP1AQ9HD42 MIR4306-201ENST00000583390 91 ntBASIC-1.66□□□□□ -2.68
CHMP1AQ9HD42 Y_RNA.365-201ENST00000365537 102 ntBASIC-1.67□□□□□ -2.68
CHMP1AQ9HD42 RNU6-1111P-201ENST00000391118 107 ntBASIC-1.67□□□□□ -2.68
CHMP1AQ9HD42 AC091912.2-201ENST00000624798 167 ntBASIC-1.67□□□□□ -2.68
CHMP1AQ9HD42 RNU6-30P-201ENST00000384561 107 ntBASIC-1.68□□□□□ -2.68
CHMP1AQ9HD42 RNU6-172P-201ENST00000411000 93 ntBASIC-1.68□□□□□ -2.68
CHMP1AQ9HD42 snoU13.19-201ENST00000459148 104 ntBASIC-1.68□□□□□ -2.68
CHMP1AQ9HD42 RNU7-151P-201ENST00000516930 53 ntBASIC-1.69□□□□□ -2.68
CHMP1AQ9HD42 SNORD78.1-201ENST00000390866 65 ntBASIC-1.7□□□□□ -2.68
CHMP1AQ9HD42 MIR6874-201ENST00000635894 71 ntBASIC-1.7□□□□□ -2.68
CHMP1AQ9HD42 SNORD60.1-201ENST00000362451 73 ntBASIC-1.71□□□□□ -2.68
CHMP1AQ9HD42 MIR1302-4-201ENST00000408701 150 ntBASIC-1.71□□□□□ -2.68
CHMP1AQ9HD42 MIR579-201ENST00000385221 98 ntBASIC-1.72□□□□□ -2.68
CHMP1AQ9HD42 RNU6-995P-201ENST00000391244 107 ntBASIC-1.72□□□□□ -2.68
CHMP1AQ9HD42 MIR889-201ENST00000401280 79 ntBASIC-1.72□□□□□ -2.68
CHMP1AQ9HD42 MIR8485-201ENST00000401372 91 ntBASIC-1.72□□□□□ -2.68
CHMP1AQ9HD42 SNORD30.1-201ENST00000391309 70 ntBASIC-1.73□□□□□ -2.69
CHMP1AQ9HD42 RNA5SP225-201ENST00000410874 135 ntBASIC-1.73□□□□□ -2.69
CHMP1AQ9HD42 MIR6738-201ENST00000619620 64 ntBASIC-1.73□□□□□ -2.69
CHMP1AQ9HD42 MIR7978-201ENST00000636158 59 ntBASIC-1.73□□□□□ -2.69
CHMP1AQ9HD42 RNU6-247P-201ENST00000362636 107 ntBASIC-1.74□□□□□ -2.69
CHMP1AQ9HD42 SNORA25.4-201ENST00000363666 124 ntBASIC-1.74□□□□□ -2.69
CHMP1AQ9HD42 AC018880.2-201ENST00000414265 201 ntBASIC-1.74□□□□□ -2.69
CHMP1AQ9HD42 RNU6-871P-201ENST00000516122 100 ntBASIC-1.74□□□□□ -2.69
CHMP1AQ9HD42 MIR4324-201ENST00000584846 72 ntBASIC-1.74□□□□□ -2.69
CHMP1AQ9HD42 RNU6-258P-201ENST00000390884 101 ntBASIC-1.75□□□□□ -2.69
CHMP1AQ9HD42 MTRNR2L9-201ENST00000622562 75 ntBASIC-1.75□□□□□ -2.69
CHMP1AQ9HD42 MIR4679-1-201ENST00000637619 75 ntBASIC-1.75□□□□□ -2.69
CHMP1AQ9HD42 MIR587-201ENST00000384845 96 ntBASIC-1.77□□□□□ -2.69
CHMP1AQ9HD42 Y_RNA.699-201ENST00000516803 93 ntBASIC-1.78□□□□□ -2.69
CHMP1AQ9HD42 MIR23C-201ENST00000579846 100 ntBASIC-1.78□□□□□ -2.69
CHMP1AQ9HD42 MIR125B1-201ENST00000385236 88 ntBASIC-1.79□□□□□ -2.7
CHMP1AQ9HD42 AC005520.4-201ENST00000604337 90 ntBASIC-1.79□□□□□ -2.7
CHMP1AQ9HD42 SNORA25.5-201ENST00000363782 126 ntBASIC-1.8□□□□□ -2.7
Retrieved 100 of 98,524 protein–RNA pairs in 175.6 ms