Protein–RNA interactions for Protein: Q96QK1

VPS35, Vacuolar protein sorting-associated protein 35, humanhuman

Predictions only

Length 796 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35Q96QK1 MIR548AA1-201ENST00000384971 97 ntBASIC-1.89□□□□□ -2.71
VPS35Q96QK1 RNU6-1168P-201ENST00000390831 104 ntBASIC-1.89□□□□□ -2.71
VPS35Q96QK1 RNU6-1111P-201ENST00000391118 107 ntBASIC-1.89□□□□□ -2.71
VPS35Q96QK1 RNU6-402P-201ENST00000410678 103 ntBASIC-1.89□□□□□ -2.71
VPS35Q96QK1 SNORD1B-201ENST00000363091 84 ntBASIC-1.9□□□□□ -2.71
VPS35Q96QK1 Y_RNA.219-201ENST00000364232 113 ntBASIC-1.9□□□□□ -2.71
VPS35Q96QK1 SNORD116-22-201ENST00000384430 92 ntBASIC-1.9□□□□□ -2.71
VPS35Q96QK1 SNORA41B-201ENST00000384785 128 ntBASIC-1.9□□□□□ -2.71
VPS35Q96QK1 MIR450A1-201ENST00000362262 91 ntBASIC-1.91□□□□□ -2.72
VPS35Q96QK1 RNA5SP215-201ENST00000363440 122 ntBASIC-1.91□□□□□ -2.72
VPS35Q96QK1 Y_RNA.223-201ENST00000364290 113 ntBASIC-1.91□□□□□ -2.72
VPS35Q96QK1 RNU6-129P-201ENST00000391022 107 ntBASIC-1.91□□□□□ -2.72
VPS35Q96QK1 MIR3123-201ENST00000583417 75 ntBASIC-1.91□□□□□ -2.72
VPS35Q96QK1 ST7-OT3_1.1-201ENST00000619607 74 ntBASIC-1.91□□□□□ -2.72
VPS35Q96QK1 MTRNR2L9-201ENST00000622562 75 ntBASIC-1.91□□□□□ -2.72
VPS35Q96QK1 MTND4LP1-201ENST00000446263 157 ntBASIC-1.92□□□□□ -2.72
VPS35Q96QK1 AC108019.1-201ENST00000512540 175 ntBASIC-1.92□□□□□ -2.72
VPS35Q96QK1 MIR3671-201ENST00000580455 88 ntBASIC-1.92□□□□□ -2.72
VPS35Q96QK1 MIR4484-201ENST00000582855 83 ntBASIC-1.92□□□□□ -2.72
VPS35Q96QK1 Y_RNA.55-201ENST00000362797 102 ntBASIC-1.93□□□□□ -2.72
VPS35Q96QK1 SNORD113.1-201ENST00000363280 73 ntBASIC-1.93□□□□□ -2.72
VPS35Q96QK1 RNU6-841P-201ENST00000383872 107 ntBASIC-1.93□□□□□ -2.72
VPS35Q96QK1 RNU6-22P-201ENST00000384355 107 ntBASIC-1.93□□□□□ -2.72
VPS35Q96QK1 SPRY4-IT1_2.1-201ENST00000612613 121 ntBASIC-1.93□□□□□ -2.72
VPS35Q96QK1 MALAT1.1-201ENST00000618249 95 ntBASIC-1.93□□□□□ -2.72
VPS35Q96QK1 Y_RNA.781-201ENST00000620301 103 ntBASIC-1.93□□□□□ -2.72
VPS35Q96QK1 Y_RNA.449-201ENST00000384187 102 ntBASIC-1.94□□□□□ -2.72
VPS35Q96QK1 RNU6-1117P-201ENST00000384525 104 ntBASIC-1.94□□□□□ -2.72
VPS35Q96QK1 MIR1297-201ENST00000637311 77 ntBASIC-1.94□□□□□ -2.72
VPS35Q96QK1 RNU6-228P-201ENST00000362700 106 ntBASIC-1.95□□□□□ -2.72
VPS35Q96QK1 RNU6-668P-201ENST00000364180 107 ntBASIC-1.95□□□□□ -2.72
VPS35Q96QK1 RNU6-1325P-201ENST00000364905 105 ntBASIC-1.95□□□□□ -2.72
VPS35Q96QK1 SNORA40.13-201ENST00000516379 120 ntBASIC-1.95□□□□□ -2.72
VPS35Q96QK1 Y_RNA.442-201ENST00000384131 102 ntBASIC-1.96□□□□□ -2.72
VPS35Q96QK1 Y_RNA.502-201ENST00000384478 113 ntBASIC-1.96□□□□□ -2.72
VPS35Q96QK1 RNU6-1081P-201ENST00000384537 107 ntBASIC-1.96□□□□□ -2.72
VPS35Q96QK1 TRAJ53-201ENST00000390485 66 ntAPPRIS P1 BASIC-1.96□□□□□ -2.72
VPS35Q96QK1 Y_RNA.616-201ENST00000410835 95 ntBASIC-1.96□□□□□ -2.72
VPS35Q96QK1 AP001318.4-201ENST00000616637 121 ntBASIC-1.96□□□□□ -2.72
VPS35Q96QK1 SNORD45A-201ENST00000384512 84 ntBASIC-1.97□□□□□ -2.72
VPS35Q96QK1 RNU6-1154P-201ENST00000391001 104 ntBASIC-1.97□□□□□ -2.72
VPS35Q96QK1 MIR1207-201ENST00000408249 87 ntBASIC-1.97□□□□□ -2.72
VPS35Q96QK1 Y_RNA.611-201ENST00000410682 108 ntBASIC-1.97□□□□□ -2.72
VPS35Q96QK1 RNU6-983P-201ENST00000516004 103 ntBASIC-1.97□□□□□ -2.72
VPS35Q96QK1 Y_RNA.699-201ENST00000516803 93 ntBASIC-1.97□□□□□ -2.72
VPS35Q96QK1 MIR548AM-201ENST00000584298 74 ntBASIC-1.97□□□□□ -2.72
VPS35Q96QK1 MIR8053-201ENST00000613344 75 ntBASIC-1.97□□□□□ -2.72
VPS35Q96QK1 RNU6-247P-201ENST00000362636 107 ntBASIC-1.98□□□□□ -2.73
VPS35Q96QK1 RNU6-675P-201ENST00000384236 104 ntBASIC-1.98□□□□□ -2.73
VPS35Q96QK1 AC005520.4-201ENST00000604337 90 ntBASIC-1.98□□□□□ -2.73
VPS35Q96QK1 MIR664A-201ENST00000626086 82 ntBASIC-1.98□□□□□ -2.73
VPS35Q96QK1 RNU7-151P-201ENST00000516930 53 ntBASIC-1.99□□□□□ -2.73
VPS35Q96QK1 AC013734.1-201ENST00000619329 111 ntBASIC-1.99□□□□□ -2.73
VPS35Q96QK1 RNU6-313P-201ENST00000516317 112 ntBASIC-2□□□□□ -2.73
VPS35Q96QK1 MIR4756-201ENST00000577874 78 ntBASIC-2□□□□□ -2.73
VPS35Q96QK1 MIR7978-201ENST00000636158 59 ntBASIC-2□□□□□ -2.73
VPS35Q96QK1 AC006160.2-201ENST00000637708 154 ntBASIC-2□□□□□ -2.73
VPS35Q96QK1 RNA5SP173-201ENST00000364857 136 ntBASIC-2.01□□□□□ -2.73
VPS35Q96QK1 RNU6-669P-201ENST00000365575 107 ntBASIC-2.01□□□□□ -2.73
VPS35Q96QK1 MIR488-201ENST00000365739 83 ntBASIC-2.01□□□□□ -2.73
VPS35Q96QK1 RNY4P18-201ENST00000391107 89 ntBASIC-2.01□□□□□ -2.73
VPS35Q96QK1 SNORA63.4-201ENST00000362763 126 ntBASIC-2.02□□□□□ -2.73
VPS35Q96QK1 SNORA27.2-201ENST00000363365 126 ntBASIC-2.02□□□□□ -2.73
VPS35Q96QK1 RNU6-1034P-201ENST00000365335 101 ntBASIC-2.02□□□□□ -2.73
VPS35Q96QK1 MIR125B1-201ENST00000385236 88 ntBASIC-2.02□□□□□ -2.73
VPS35Q96QK1 MIR548M-201ENST00000408260 86 ntBASIC-2.02□□□□□ -2.73
VPS35Q96QK1 MIR664B-201ENST00000626756 61 ntBASIC-2.02□□□□□ -2.73
VPS35Q96QK1 SNORD63.2-201ENST00000516303 64 ntBASIC-2.03□□□□□ -2.73
VPS35Q96QK1 Y_RNA.273-201ENST00000364703 102 ntBASIC-2.04□□□□□ -2.74
VPS35Q96QK1 Y_RNA.375-201ENST00000365625 101 ntBASIC-2.04□□□□□ -2.74
VPS35Q96QK1 MIR579-201ENST00000385221 98 ntBASIC-2.04□□□□□ -2.74
VPS35Q96QK1 RNU6-995P-201ENST00000391244 107 ntBASIC-2.04□□□□□ -2.74
VPS35Q96QK1 RNY4P27-201ENST00000363341 96 ntBASIC-2.05□□□□□ -2.74
VPS35Q96QK1 RNU6-755P-201ENST00000364400 103 ntBASIC-2.05□□□□□ -2.74
VPS35Q96QK1 SNORD116-24-201ENST00000384549 92 ntBASIC-2.05□□□□□ -2.74
VPS35Q96QK1 MT-TR-201ENST00000387439 65 ntBASIC-2.05□□□□□ -2.74
VPS35Q96QK1 RNU6-172P-201ENST00000411000 93 ntBASIC-2.05□□□□□ -2.74
VPS35Q96QK1 RNU6-523P-201ENST00000516304 54 ntBASIC-2.05□□□□□ -2.74
VPS35Q96QK1 RNU6-315P-201ENST00000362666 107 ntBASIC-2.06□□□□□ -2.74
VPS35Q96QK1 RNU6-640P-201ENST00000363693 105 ntBASIC-2.06□□□□□ -2.74
VPS35Q96QK1 RNU6-1094P-201ENST00000362416 104 ntBASIC-2.07□□□□□ -2.74
VPS35Q96QK1 RNY3P8-201ENST00000411366 126 ntBASIC-2.07□□□□□ -2.74
VPS35Q96QK1 RNU6-844P-201ENST00000517175 102 ntBASIC-2.07□□□□□ -2.74
VPS35Q96QK1 SNORD19B.1-201ENST00000630615 80 ntBASIC-2.07□□□□□ -2.74
VPS35Q96QK1 RNU6-974P-201ENST00000384099 108 ntBASIC-2.08□□□□□ -2.74
VPS35Q96QK1 RNU6-380P-201ENST00000410207 107 ntBASIC-2.08□□□□□ -2.74
VPS35Q96QK1 Y_RNA.607-201ENST00000410597 98 ntBASIC-2.08□□□□□ -2.74
VPS35Q96QK1 RNU4-88P-201ENST00000411220 86 ntBASIC-2.08□□□□□ -2.74
VPS35Q96QK1 RNU6-1241P-201ENST00000384536 107 ntBASIC-2.1□□□□□ -2.75
VPS35Q96QK1 RNU6-980P-201ENST00000516925 103 ntBASIC-2.1□□□□□ -2.75
VPS35Q96QK1 MIR548W-201ENST00000581970 74 ntBASIC-2.1□□□□□ -2.75
VPS35Q96QK1 U6.97-201ENST00000636904 101 ntBASIC-2.1□□□□□ -2.75
VPS35Q96QK1 CR2-207ENST00000640301 151 ntTSL 1 (best) BASIC-2.1□□□□□ -2.75
VPS35Q96QK1 SNORD115-31-201ENST00000365318 82 ntBASIC-2.11□□□□□ -2.75
VPS35Q96QK1 Y_RNA.543-201ENST00000384649 107 ntBASIC-2.11□□□□□ -2.75
VPS35Q96QK1 snoMBII-202.2-201ENST00000517263 86 ntBASIC-2.11□□□□□ -2.75
VPS35Q96QK1 Y_RNA.17-201ENST00000362433 111 ntBASIC-2.12□□□□□ -2.75
VPS35Q96QK1 Y_RNA.316-201ENST00000365118 111 ntBASIC-2.12□□□□□ -2.75
VPS35Q96QK1 RNU6-32P-201ENST00000383948 107 ntBASIC-2.12□□□□□ -2.75
VPS35Q96QK1 RNU6-13P-201ENST00000384248 107 ntBASIC-2.12□□□□□ -2.75
Retrieved 100 of 98,524 protein–RNA pairs in 283.1 ms