Protein–RNA interactions for Protein: Q96JC1

VPS39, Vam6/Vps39-like protein, humanhuman

Predictions only

Length 886 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39Q96JC1 RNU6-380P-201ENST00000410207 107 ntBASIC-1.41□□□□□ -2.64
VPS39Q96JC1 MTND4LP1-201ENST00000446263 157 ntBASIC-1.41□□□□□ -2.64
VPS39Q96JC1 MIR494-201ENST00000349529 81 ntBASIC-1.42□□□□□ -2.64
VPS39Q96JC1 RNU6-598P-201ENST00000364017 105 ntBASIC-1.42□□□□□ -2.64
VPS39Q96JC1 RNU6-668P-201ENST00000364180 107 ntBASIC-1.42□□□□□ -2.64
VPS39Q96JC1 MIR4320-201ENST00000636981 65 ntBASIC-1.42□□□□□ -2.64
VPS39Q96JC1 MIR4490-201ENST00000582647 84 ntBASIC-1.43□□□□□ -2.64
VPS39Q96JC1 MIR8053-201ENST00000613344 75 ntBASIC-1.43□□□□□ -2.64
VPS39Q96JC1 RNU6-1094P-201ENST00000362416 104 ntBASIC-1.44□□□□□ -2.64
VPS39Q96JC1 RNU6-696P-201ENST00000390834 107 ntBASIC-1.44□□□□□ -2.64
VPS39Q96JC1 RNU7-171P-201ENST00000459581 62 ntBASIC-1.44□□□□□ -2.64
VPS39Q96JC1 U2.18-201ENST00000622185 84 ntBASIC-1.44□□□□□ -2.64
VPS39Q96JC1 RNU6-153P-201ENST00000364422 104 ntBASIC-1.45□□□□□ -2.64
VPS39Q96JC1 RNU6-576P-201ENST00000390854 102 ntBASIC-1.45□□□□□ -2.64
VPS39Q96JC1 SNORD113-2-201ENST00000391082 72 ntBASIC-1.45□□□□□ -2.64
VPS39Q96JC1 AC091912.2-201ENST00000624798 167 ntBASIC-1.45□□□□□ -2.64
VPS39Q96JC1 AC090616.4-201ENST00000448026 115 ntBASIC-1.46□□□□□ -2.64
VPS39Q96JC1 MIR3165-201ENST00000579874 75 ntBASIC-1.46□□□□□ -2.64
VPS39Q96JC1 MIR4712-201ENST00000583750 82 ntBASIC-1.46□□□□□ -2.64
VPS39Q96JC1 Y_RNA.788-201ENST00000622394 112 ntBASIC-1.46□□□□□ -2.64
VPS39Q96JC1 Y_RNA.313-201ENST00000365095 103 ntBASIC-1.47□□□□□ -2.64
VPS39Q96JC1 MIR6502-201ENST00000617296 76 ntBASIC-1.47□□□□□ -2.64
VPS39Q96JC1 RNA5SP215-201ENST00000363440 122 ntBASIC-1.48□□□□□ -2.65
VPS39Q96JC1 RNU6-1241P-201ENST00000384536 107 ntBASIC-1.48□□□□□ -2.65
VPS39Q96JC1 RNU6-70P-201ENST00000516438 60 ntBASIC-1.48□□□□□ -2.65
VPS39Q96JC1 MIR1245B-201ENST00000636115 69 ntBASIC-1.48□□□□□ -2.65
VPS39Q96JC1 Y_RNA.94-201ENST00000363068 106 ntBASIC-1.49□□□□□ -2.65
VPS39Q96JC1 Y_RNA.457-201ENST00000384237 111 ntBASIC-1.49□□□□□ -2.65
VPS39Q96JC1 RNU6-630P-201ENST00000391258 106 ntBASIC-1.49□□□□□ -2.65
VPS39Q96JC1 MIR6874-201ENST00000635894 71 ntBASIC-1.49□□□□□ -2.65
VPS39Q96JC1 SNORA41B-201ENST00000384785 128 ntBASIC-1.5□□□□□ -2.65
VPS39Q96JC1 MIR520D-201ENST00000385002 87 ntBASIC-1.5□□□□□ -2.65
VPS39Q96JC1 HLA-S-202ENST00000425174 53 ntBASIC-1.5□□□□□ -2.65
VPS39Q96JC1 RNU6ATAC17P-201ENST00000516074 71 ntBASIC-1.5□□□□□ -2.65
VPS39Q96JC1 MIR5591-201ENST00000578248 65 ntBASIC-1.5□□□□□ -2.65
VPS39Q96JC1 RNU6-164P-201ENST00000364604 103 ntBASIC-1.51□□□□□ -2.65
VPS39Q96JC1 SNORD116-24-201ENST00000384549 92 ntBASIC-1.51□□□□□ -2.65
VPS39Q96JC1 MIR429-201ENST00000362106 83 ntBASIC-1.52□□□□□ -2.65
VPS39Q96JC1 RNU6-294P-201ENST00000364999 102 ntBASIC-1.52□□□□□ -2.65
VPS39Q96JC1 RNU6-1276P-201ENST00000365372 104 ntBASIC-1.52□□□□□ -2.65
VPS39Q96JC1 MIR3134-201ENST00000579433 74 ntBASIC-1.52□□□□□ -2.65
VPS39Q96JC1 MIR4520-1-201ENST00000582609 70 ntBASIC-1.52□□□□□ -2.65
VPS39Q96JC1 AL627230.5-201ENST00000619807 58 ntBASIC-1.52□□□□□ -2.65
VPS39Q96JC1 RNA5SP331-201ENST00000364986 107 ntBASIC-1.53□□□□□ -2.65
VPS39Q96JC1 SNORD115-31-201ENST00000365318 82 ntBASIC-1.53□□□□□ -2.65
VPS39Q96JC1 Y_RNA.468-201ENST00000384298 102 ntBASIC-1.53□□□□□ -2.65
VPS39Q96JC1 Y_RNA.603-201ENST00000410571 108 ntBASIC-1.53□□□□□ -2.65
VPS39Q96JC1 RNU6-1216P-201ENST00000362590 107 ntBASIC-1.54□□□□□ -2.66
VPS39Q96JC1 RNU6-608P-201ENST00000383927 104 ntBASIC-1.54□□□□□ -2.66
VPS39Q96JC1 RNU6-787P-201ENST00000384032 107 ntBASIC-1.54□□□□□ -2.66
VPS39Q96JC1 SNORD116-16-201ENST00000384533 92 ntBASIC-1.54□□□□□ -2.66
VPS39Q96JC1 MIR450A2-201ENST00000385022 100 ntBASIC-1.54□□□□□ -2.66
VPS39Q96JC1 MIR154-201ENST00000385243 84 ntBASIC-1.54□□□□□ -2.66
VPS39Q96JC1 MIR4770-201ENST00000579149 58 ntBASIC-1.54□□□□□ -2.66
VPS39Q96JC1 RNU6-242P-201ENST00000384359 107 ntBASIC-1.55□□□□□ -2.66
VPS39Q96JC1 MIR5582-201ENST00000579697 68 ntBASIC-1.55□□□□□ -2.66
VPS39Q96JC1 RNU6-1267P-201ENST00000410747 107 ntBASIC-1.56□□□□□ -2.66
VPS39Q96JC1 SNX3P1X-201ENST00000414887 175 ntBASIC-1.56□□□□□ -2.66
VPS39Q96JC1 MIR4666B-201ENST00000578142 81 ntBASIC-1.56□□□□□ -2.66
VPS39Q96JC1 RNU6-226P-201ENST00000363778 107 ntBASIC-1.58□□□□□ -2.66
VPS39Q96JC1 RNU6-895P-201ENST00000384125 103 ntBASIC-1.58□□□□□ -2.66
VPS39Q96JC1 Y_RNA.694-201ENST00000516677 117 ntBASIC-1.58□□□□□ -2.66
VPS39Q96JC1 SNORD1B-201ENST00000363091 84 ntBASIC-1.59□□□□□ -2.66
VPS39Q96JC1 Y_RNA.375-201ENST00000365625 101 ntBASIC-1.59□□□□□ -2.66
VPS39Q96JC1 AL078612.1-201ENST00000533009 150 ntTSL 5 BASIC-1.59□□□□□ -2.66
VPS39Q96JC1 RNU6-687P-201ENST00000516443 89 ntBASIC-1.6□□□□□ -2.67
VPS39Q96JC1 MIR3170-201ENST00000582699 77 ntBASIC-1.6□□□□□ -2.67
VPS39Q96JC1 AC062037.1-201ENST00000605302 128 ntBASIC-1.6□□□□□ -2.67
VPS39Q96JC1 hsa-mir-4536-1.1-201ENST00000636519 88 ntBASIC-1.61□□□□□ -2.67
VPS39Q96JC1 RNA5SP86-201ENST00000390869 98 ntBASIC-1.62□□□□□ -2.67
VPS39Q96JC1 RNA5SP173-201ENST00000364857 136 ntBASIC-1.63□□□□□ -2.67
VPS39Q96JC1 MIR548AA1-201ENST00000384971 97 ntBASIC-1.63□□□□□ -2.67
VPS39Q96JC1 MIR198-201ENST00000637333 62 ntBASIC-1.63□□□□□ -2.67
VPS39Q96JC1 Y_RNA.369-201ENST00000365568 117 ntBASIC-1.64□□□□□ -2.67
VPS39Q96JC1 RNU6-258P-201ENST00000390884 101 ntBASIC-1.64□□□□□ -2.67
VPS39Q96JC1 RNU6-1152P-201ENST00000384576 107 ntBASIC-1.65□□□□□ -2.67
VPS39Q96JC1 MIR579-201ENST00000385221 98 ntBASIC-1.65□□□□□ -2.67
VPS39Q96JC1 AC018880.2-201ENST00000414265 201 ntBASIC-1.65□□□□□ -2.67
VPS39Q96JC1 RNA5SP461-201ENST00000516451 104 ntBASIC-1.65□□□□□ -2.67
VPS39Q96JC1 Y_RNA.81-201ENST00000362997 102 ntBASIC-1.66□□□□□ -2.68
VPS39Q96JC1 MIR601-201ENST00000385256 79 ntBASIC-1.66□□□□□ -2.68
VPS39Q96JC1 RNU6-1111P-201ENST00000391118 107 ntBASIC-1.66□□□□□ -2.68
VPS39Q96JC1 RNU7-151P-201ENST00000516930 53 ntBASIC-1.66□□□□□ -2.68
VPS39Q96JC1 SPRY4-IT1_2.1-201ENST00000612613 121 ntBASIC-1.66□□□□□ -2.68
VPS39Q96JC1 hsa-mir-3607.1-201ENST00000637229 79 ntBASIC-1.67□□□□□ -2.68
VPS39Q96JC1 RNU6-79P-201ENST00000362511 107 ntBASIC-1.68□□□□□ -2.68
VPS39Q96JC1 RNU6-820P-201ENST00000384273 107 ntBASIC-1.68□□□□□ -2.68
VPS39Q96JC1 TRAJ9-201ENST00000390528 61 ntAPPRIS P1 BASIC-1.68□□□□□ -2.68
VPS39Q96JC1 RNU6-1015P-201ENST00000517121 99 ntBASIC-1.68□□□□□ -2.68
VPS39Q96JC1 RNU6-172P-201ENST00000411000 93 ntBASIC-1.69□□□□□ -2.68
VPS39Q96JC1 RNU6-247P-201ENST00000362636 107 ntBASIC-1.71□□□□□ -2.68
VPS39Q96JC1 RNU6-411P-201ENST00000384451 107 ntBASIC-1.71□□□□□ -2.68
VPS39Q96JC1 RNU6-400P-201ENST00000391173 106 ntBASIC-1.71□□□□□ -2.68
VPS39Q96JC1 MIR548H1-201ENST00000408610 102 ntBASIC-1.71□□□□□ -2.68
VPS39Q96JC1 MIR487B-201ENST00000385021 84 ntBASIC-1.72□□□□□ -2.68
VPS39Q96JC1 MIR1468-201ENST00000410600 86 ntBASIC-1.72□□□□□ -2.68
VPS39Q96JC1 RNU6-542P-201ENST00000516405 103 ntBASIC-1.72□□□□□ -2.68
VPS39Q96JC1 MIR7978-201ENST00000636158 59 ntBASIC-1.72□□□□□ -2.68
VPS39Q96JC1 RNA5SP180-201ENST00000516181 101 ntBASIC-1.73□□□□□ -2.69
VPS39Q96JC1 Y_RNA.678-201ENST00000516408 96 ntBASIC-1.73□□□□□ -2.69
Retrieved 100 of 98,524 protein–RNA pairs in 14.7 ms