Protein–RNA interactions for Protein: Q8N4P3

HDDC3, Guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase MESH1, humanhuman

Predictions only

Length 179 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HDDC3Q8N4P3 Y_RNA.611-201ENST00000410682 108 ntBASIC-2.6□□□□□ -2.83
HDDC3Q8N4P3 TMSB4XP3-201ENST00000445144 114 ntBASIC-2.6□□□□□ -2.83
HDDC3Q8N4P3 MIR548V-201ENST00000584165 80 ntBASIC-2.6□□□□□ -2.83
HDDC3Q8N4P3 MIRLET7A1-201ENST00000362295 80 ntBASIC-2.62□□□□□ -2.83
HDDC3Q8N4P3 RNU6-1168P-201ENST00000390831 104 ntBASIC-2.62□□□□□ -2.83
HDDC3Q8N4P3 RNU6-267P-201ENST00000516714 103 ntBASIC-2.62□□□□□ -2.83
HDDC3Q8N4P3 AP001318.4-201ENST00000616637 121 ntBASIC-2.62□□□□□ -2.83
HDDC3Q8N4P3 MIR1297-201ENST00000637311 77 ntBASIC-2.62□□□□□ -2.83
HDDC3Q8N4P3 SNORD18.1-201ENST00000363807 70 ntBASIC-2.64□□□□□ -2.83
HDDC3Q8N4P3 Y_RNA.340-201ENST00000365330 92 ntBASIC-2.64□□□□□ -2.83
HDDC3Q8N4P3 RNU6-400P-201ENST00000391173 106 ntBASIC-2.64□□□□□ -2.83
HDDC3Q8N4P3 MIR4484-201ENST00000582855 83 ntBASIC-2.64□□□□□ -2.83
HDDC3Q8N4P3 RNU6-1117P-201ENST00000384525 104 ntBASIC-2.65□□□□□ -2.83
HDDC3Q8N4P3 MIR3668-201ENST00000582138 75 ntBASIC-2.65□□□□□ -2.83
HDDC3Q8N4P3 U4.4-201ENST00000620626 117 ntBASIC-2.65□□□□□ -2.83
HDDC3Q8N4P3 RNU6-598P-201ENST00000364017 105 ntBASIC-2.66□□□□□ -2.84
HDDC3Q8N4P3 RNU6-22P-201ENST00000384355 107 ntBASIC-2.66□□□□□ -2.84
HDDC3Q8N4P3 TRAJ53-201ENST00000390485 66 ntAPPRIS P1 BASIC-2.66□□□□□ -2.84
HDDC3Q8N4P3 RNU6-668P-201ENST00000364180 107 ntBASIC-2.67□□□□□ -2.84
HDDC3Q8N4P3 RNU6-497P-201ENST00000365316 104 ntBASIC-2.67□□□□□ -2.84
HDDC3Q8N4P3 RNU6-1154P-201ENST00000391001 104 ntBASIC-2.67□□□□□ -2.84
HDDC3Q8N4P3 SNORD113-2-201ENST00000391082 72 ntBASIC-2.68□□□□□ -2.84
HDDC3Q8N4P3 MIR8053-201ENST00000613344 75 ntBASIC-2.68□□□□□ -2.84
HDDC3Q8N4P3 RNU6-608P-201ENST00000383927 104 ntBASIC-2.69□□□□□ -2.84
HDDC3Q8N4P3 Y_RNA.426-201ENST00000384068 113 ntBASIC-2.69□□□□□ -2.84
HDDC3Q8N4P3 Y_RNA.532-201ENST00000384590 113 ntBASIC-2.69□□□□□ -2.84
HDDC3Q8N4P3 RNU6-313P-201ENST00000516317 112 ntBASIC-2.69□□□□□ -2.84
HDDC3Q8N4P3 MIR23C-201ENST00000579846 100 ntBASIC-2.69□□□□□ -2.84
HDDC3Q8N4P3 RNA5SP215-201ENST00000363440 122 ntBASIC-2.7□□□□□ -2.84
HDDC3Q8N4P3 RNA5SP173-201ENST00000364857 136 ntBASIC-2.7□□□□□ -2.84
HDDC3Q8N4P3 MIR630-201ENST00000384957 97 ntBASIC-2.7□□□□□ -2.84
HDDC3Q8N4P3 RNU6-1111P-201ENST00000391118 107 ntBASIC-2.7□□□□□ -2.84
HDDC3Q8N4P3 Y_RNA.219-201ENST00000364232 113 ntBASIC-2.71□□□□□ -2.84
HDDC3Q8N4P3 MIR548H1-201ENST00000408610 102 ntBASIC-2.71□□□□□ -2.84
HDDC3Q8N4P3 U2.18-201ENST00000622185 84 ntBASIC-2.71□□□□□ -2.84
HDDC3Q8N4P3 AC006160.2-201ENST00000637708 154 ntBASIC-2.71□□□□□ -2.84
HDDC3Q8N4P3 RNU6-79P-201ENST00000362511 107 ntBASIC-2.75□□□□□ -2.85
HDDC3Q8N4P3 MIR520D-201ENST00000385002 87 ntBASIC-2.75□□□□□ -2.85
HDDC3Q8N4P3 MIR548AA1-201ENST00000384971 97 ntBASIC-2.76□□□□□ -2.85
HDDC3Q8N4P3 RNA5SP86-201ENST00000390869 98 ntBASIC-2.76□□□□□ -2.85
HDDC3Q8N4P3 RNY4P18-201ENST00000391107 89 ntBASIC-2.76□□□□□ -2.85
HDDC3Q8N4P3 SNORD113.1-201ENST00000363280 73 ntBASIC-2.77□□□□□ -2.85
HDDC3Q8N4P3 RNU6-980P-201ENST00000516925 103 ntBASIC-2.77□□□□□ -2.85
HDDC3Q8N4P3 Y_RNA.273-201ENST00000364703 102 ntBASIC-2.78□□□□□ -2.85
HDDC3Q8N4P3 SNORD116-16-201ENST00000384533 92 ntBASIC-2.78□□□□□ -2.85
HDDC3Q8N4P3 MIR548M-201ENST00000408260 86 ntBASIC-2.78□□□□□ -2.85
HDDC3Q8N4P3 RNU6-247P-201ENST00000362636 107 ntBASIC-2.79□□□□□ -2.86
HDDC3Q8N4P3 RNU6-675P-201ENST00000384236 104 ntBASIC-2.79□□□□□ -2.86
HDDC3Q8N4P3 RNU6-844P-201ENST00000517175 102 ntBASIC-2.79□□□□□ -2.86
HDDC3Q8N4P3 MIR3671-201ENST00000580455 88 ntBASIC-2.79□□□□□ -2.86
HDDC3Q8N4P3 SNORA63.4-201ENST00000362763 126 ntBASIC-2.8□□□□□ -2.86
HDDC3Q8N4P3 RNU6-32P-201ENST00000383948 107 ntBASIC-2.8□□□□□ -2.86
HDDC3Q8N4P3 RNU6-13P-201ENST00000384248 107 ntBASIC-2.8□□□□□ -2.86
HDDC3Q8N4P3 RNU6-12P-201ENST00000384604 107 ntBASIC-2.8□□□□□ -2.86
HDDC3Q8N4P3 RNU6-41P-201ENST00000384741 107 ntBASIC-2.8□□□□□ -2.86
HDDC3Q8N4P3 MIR3170-201ENST00000582699 77 ntBASIC-2.81□□□□□ -2.86
HDDC3Q8N4P3 RNU6-755P-201ENST00000364400 103 ntBASIC-2.82□□□□□ -2.86
HDDC3Q8N4P3 SNORD45A-201ENST00000384512 84 ntBASIC-2.82□□□□□ -2.86
HDDC3Q8N4P3 MIR488-201ENST00000365739 83 ntBASIC-2.83□□□□□ -2.86
HDDC3Q8N4P3 RNU6-995P-201ENST00000391244 107 ntBASIC-2.83□□□□□ -2.86
HDDC3Q8N4P3 Y_RNA.607-201ENST00000410597 98 ntBASIC-2.83□□□□□ -2.86
HDDC3Q8N4P3 RNU6-1267P-201ENST00000410747 107 ntBASIC-2.83□□□□□ -2.86
HDDC3Q8N4P3 RNU6-1134P-201ENST00000365156 101 ntBASIC-2.85□□□□□ -2.87
HDDC3Q8N4P3 RNU6-315P-201ENST00000362666 107 ntBASIC-2.86□□□□□ -2.87
HDDC3Q8N4P3 Y_RNA.699-201ENST00000516803 93 ntBASIC-2.86□□□□□ -2.87
HDDC3Q8N4P3 Y_RNA.678-201ENST00000516408 96 ntBASIC-2.87□□□□□ -2.87
HDDC3Q8N4P3 RNU6-1094P-201ENST00000362416 104 ntBASIC-2.88□□□□□ -2.87
HDDC3Q8N4P3 RNU6-640P-201ENST00000363693 105 ntBASIC-2.88□□□□□ -2.87
HDDC3Q8N4P3 AC120024.2-201ENST00000576526 175 ntBASIC-2.88□□□□□ -2.87
HDDC3Q8N4P3 Y_RNA.17-201ENST00000362433 111 ntBASIC-2.89□□□□□ -2.87
HDDC3Q8N4P3 Y_RNA.175-201ENST00000363794 111 ntBASIC-2.89□□□□□ -2.87
HDDC3Q8N4P3 Y_RNA.223-201ENST00000364290 113 ntBASIC-2.89□□□□□ -2.87
HDDC3Q8N4P3 snoMBII-202.2-201ENST00000517263 86 ntBASIC-2.9□□□□□ -2.87
HDDC3Q8N4P3 IGLL4P-201ENST00000614590 133 ntBASIC-2.9□□□□□ -2.87
HDDC3Q8N4P3 MIR664A-201ENST00000626086 82 ntBASIC-2.9□□□□□ -2.87
HDDC3Q8N4P3 SNORD1B-201ENST00000363091 84 ntBASIC-2.91□□□□□ -2.88
HDDC3Q8N4P3 SNORA41B-201ENST00000384785 128 ntBASIC-2.91□□□□□ -2.88
HDDC3Q8N4P3 RNU6-695P-201ENST00000391157 104 ntBASIC-2.91□□□□□ -2.88
HDDC3Q8N4P3 RNU6ATAC32P-201ENST00000516026 76 ntBASIC-2.91□□□□□ -2.88
HDDC3Q8N4P3 RNU6-1081P-201ENST00000384537 107 ntBASIC-2.93□□□□□ -2.88
HDDC3Q8N4P3 RNU6-895P-201ENST00000384125 103 ntBASIC-2.94□□□□□ -2.88
HDDC3Q8N4P3 MIR3139-201ENST00000579145 76 ntBASIC-2.94□□□□□ -2.88
HDDC3Q8N4P3 RNY1P1-201ENST00000364372 112 ntBASIC-2.95□□□□□ -2.88
HDDC3Q8N4P3 SPRY4-IT1_2.1-201ENST00000612613 121 ntBASIC-2.95□□□□□ -2.88
HDDC3Q8N4P3 RNU6-228P-201ENST00000362700 106 ntBASIC-2.96□□□□□ -2.88
HDDC3Q8N4P3 MT-TR-201ENST00000387439 65 ntBASIC-2.96□□□□□ -2.88
HDDC3Q8N4P3 Y_RNA.103-201ENST00000363171 102 ntBASIC-2.97□□□□□ -2.88
HDDC3Q8N4P3 MIR154-201ENST00000385243 84 ntBASIC-2.97□□□□□ -2.88
HDDC3Q8N4P3 Y_RNA.781-201ENST00000620301 103 ntBASIC-2.97□□□□□ -2.88
HDDC3Q8N4P3 Y_RNA.316-201ENST00000365118 111 ntBASIC-2.98□□□□□ -2.89
HDDC3Q8N4P3 RNU6-147P-201ENST00000383983 107 ntBASIC-2.98□□□□□ -2.89
HDDC3Q8N4P3 MIR487B-201ENST00000385021 84 ntBASIC-2.98□□□□□ -2.89
HDDC3Q8N4P3 Y_RNA.629-201ENST00000411368 105 ntBASIC-2.98□□□□□ -2.89
HDDC3Q8N4P3 RNU7-151P-201ENST00000516930 53 ntBASIC-2.98□□□□□ -2.89
HDDC3Q8N4P3 ST7-OT3_1.1-201ENST00000619607 74 ntBASIC-2.98□□□□□ -2.89
HDDC3Q8N4P3 Y_RNA.73-201ENST00000362910 113 ntBASIC-2.99□□□□□ -2.89
HDDC3Q8N4P3 RNU6-563P-201ENST00000364872 108 ntBASIC-2.99□□□□□ -2.89
HDDC3Q8N4P3 RNU6-1241P-201ENST00000384536 107 ntBASIC-2.99□□□□□ -2.89
HDDC3Q8N4P3 Y_RNA.593-201ENST00000410292 98 ntBASIC-2.99□□□□□ -2.89
HDDC3Q8N4P3 Y_RNA.502-201ENST00000384478 113 ntBASIC-3□□□□□ -2.89
Retrieved 100 of 98,524 protein–RNA pairs in 176.8 ms