Protein–RNA interactions for Protein: Q4G0X9

CCDC40, Coiled-coil domain-containing protein 40, humanhuman

Predictions only

Length 1,142 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC40Q4G0X9 Y_RNA.340-201ENST00000365330 92 ntBASIC-1.97□□□□□ -2.72
CCDC40Q4G0X9 RNU6-675P-201ENST00000384236 104 ntBASIC-1.97□□□□□ -2.72
CCDC40Q4G0X9 RNA5SP86-201ENST00000390869 98 ntBASIC-1.97□□□□□ -2.72
CCDC40Q4G0X9 Y_RNA.603-201ENST00000410571 108 ntBASIC-1.97□□□□□ -2.72
CCDC40Q4G0X9 AC006160.2-201ENST00000637708 154 ntBASIC-1.97□□□□□ -2.72
CCDC40Q4G0X9 TRAJ53-201ENST00000390485 66 ntAPPRIS P1 BASIC-1.98□□□□□ -2.73
CCDC40Q4G0X9 RNU6-598P-201ENST00000364017 105 ntBASIC-1.99□□□□□ -2.73
CCDC40Q4G0X9 Y_RNA.219-201ENST00000364232 113 ntBASIC-1.99□□□□□ -2.73
CCDC40Q4G0X9 RNU6-630P-201ENST00000391258 106 ntBASIC-1.99□□□□□ -2.73
CCDC40Q4G0X9 MIR23C-201ENST00000579846 100 ntBASIC-1.99□□□□□ -2.73
CCDC40Q4G0X9 RNU6-668P-201ENST00000364180 107 ntBASIC-2□□□□□ -2.73
CCDC40Q4G0X9 SNORD114-3-201ENST00000364969 75 ntBASIC-2□□□□□ -2.73
CCDC40Q4G0X9 Y_RNA.55-201ENST00000362797 102 ntBASIC-2.01□□□□□ -2.73
CCDC40Q4G0X9 RNU6-32P-201ENST00000383948 107 ntBASIC-2.01□□□□□ -2.73
CCDC40Q4G0X9 RNU6-13P-201ENST00000384248 107 ntBASIC-2.01□□□□□ -2.73
CCDC40Q4G0X9 RNU6-12P-201ENST00000384604 107 ntBASIC-2.01□□□□□ -2.73
CCDC40Q4G0X9 RNU6-41P-201ENST00000384741 107 ntBASIC-2.01□□□□□ -2.73
CCDC40Q4G0X9 RNU6-844P-201ENST00000517175 102 ntBASIC-2.01□□□□□ -2.73
CCDC40Q4G0X9 MIR4484-201ENST00000582855 83 ntBASIC-2.01□□□□□ -2.73
CCDC40Q4G0X9 SNORD18.1-201ENST00000363807 70 ntBASIC-2.02□□□□□ -2.73
CCDC40Q4G0X9 MIR488-201ENST00000365739 83 ntBASIC-2.02□□□□□ -2.73
CCDC40Q4G0X9 MT-TR-201ENST00000387439 65 ntBASIC-2.02□□□□□ -2.73
CCDC40Q4G0X9 SNORD113-2-201ENST00000391082 72 ntBASIC-2.02□□□□□ -2.73
CCDC40Q4G0X9 RNU6-400P-201ENST00000391173 106 ntBASIC-2.02□□□□□ -2.73
CCDC40Q4G0X9 RNA5SP173-201ENST00000364857 136 ntBASIC-2.03□□□□□ -2.73
CCDC40Q4G0X9 RNU6-608P-201ENST00000383927 104 ntBASIC-2.03□□□□□ -2.73
CCDC40Q4G0X9 RNU6-79P-201ENST00000362511 107 ntBASIC-2.04□□□□□ -2.74
CCDC40Q4G0X9 RNU6-315P-201ENST00000362666 107 ntBASIC-2.04□□□□□ -2.74
CCDC40Q4G0X9 SNORD113.1-201ENST00000363280 73 ntBASIC-2.04□□□□□ -2.74
CCDC40Q4G0X9 Y_RNA.607-201ENST00000410597 98 ntBASIC-2.04□□□□□ -2.74
CCDC40Q4G0X9 RNU6-640P-201ENST00000363693 105 ntBASIC-2.05□□□□□ -2.74
CCDC40Q4G0X9 MIR630-201ENST00000384957 97 ntBASIC-2.05□□□□□ -2.74
CCDC40Q4G0X9 Y_RNA.629-201ENST00000411368 105 ntBASIC-2.05□□□□□ -2.74
CCDC40Q4G0X9 MIR3910-1-201ENST00000580936 111 ntBASIC-2.05□□□□□ -2.74
CCDC40Q4G0X9 MIR4723-201ENST00000585070 81 ntBASIC-2.05□□□□□ -2.74
CCDC40Q4G0X9 MIR548H1-201ENST00000408610 102 ntBASIC-2.06□□□□□ -2.74
CCDC40Q4G0X9 SNORA63.4-201ENST00000362763 126 ntBASIC-2.07□□□□□ -2.74
CCDC40Q4G0X9 SNORD116-16-201ENST00000384533 92 ntBASIC-2.07□□□□□ -2.74
CCDC40Q4G0X9 MIR548AA1-201ENST00000384971 97 ntBASIC-2.07□□□□□ -2.74
CCDC40Q4G0X9 SNORD113-1-201ENST00000365321 69 ntBASIC-2.08□□□□□ -2.74
CCDC40Q4G0X9 Y_RNA.375-201ENST00000365625 101 ntBASIC-2.08□□□□□ -2.74
CCDC40Q4G0X9 Y_RNA.17-201ENST00000362433 111 ntBASIC-2.09□□□□□ -2.74
CCDC40Q4G0X9 RNU6-228P-201ENST00000362700 106 ntBASIC-2.09□□□□□ -2.74
CCDC40Q4G0X9 MIR520D-201ENST00000385002 87 ntBASIC-2.09□□□□□ -2.74
CCDC40Q4G0X9 MIR487B-201ENST00000385021 84 ntBASIC-2.09□□□□□ -2.74
CCDC40Q4G0X9 RNU6-1111P-201ENST00000391118 107 ntBASIC-2.09□□□□□ -2.74
CCDC40Q4G0X9 U2.18-201ENST00000622185 84 ntBASIC-2.09□□□□□ -2.74
CCDC40Q4G0X9 RNU6-1094P-201ENST00000362416 104 ntBASIC-2.1□□□□□ -2.75
CCDC40Q4G0X9 RNY4P27-201ENST00000363341 96 ntBASIC-2.11□□□□□ -2.75
CCDC40Q4G0X9 RNU6-147P-201ENST00000383983 107 ntBASIC-2.11□□□□□ -2.75
CCDC40Q4G0X9 MIR3170-201ENST00000582699 77 ntBASIC-2.11□□□□□ -2.75
CCDC40Q4G0X9 IGLL4P-201ENST00000614590 133 ntBASIC-2.11□□□□□ -2.75
CCDC40Q4G0X9 RNU6-1134P-201ENST00000365156 101 ntBASIC-2.12□□□□□ -2.75
CCDC40Q4G0X9 snoMBII-202.2-201ENST00000517263 86 ntBASIC-2.12□□□□□ -2.75
CCDC40Q4G0X9 SNORD45A-201ENST00000384512 84 ntBASIC-2.13□□□□□ -2.75
CCDC40Q4G0X9 Y_RNA.678-201ENST00000516408 96 ntBASIC-2.14□□□□□ -2.75
CCDC40Q4G0X9 Y_RNA.225-201ENST00000364326 97 ntBASIC-2.15□□□□□ -2.75
CCDC40Q4G0X9 MIR1207-201ENST00000408249 87 ntBASIC-2.15□□□□□ -2.75
CCDC40Q4G0X9 RNU6-1267P-201ENST00000410747 107 ntBASIC-2.15□□□□□ -2.75
CCDC40Q4G0X9 RNY1P1-201ENST00000364372 112 ntBASIC-2.16□□□□□ -2.76
CCDC40Q4G0X9 SNORA41B-201ENST00000384785 128 ntBASIC-2.16□□□□□ -2.76
CCDC40Q4G0X9 Y_RNA.593-201ENST00000410292 98 ntBASIC-2.16□□□□□ -2.76
CCDC40Q4G0X9 MIR5588-201ENST00000581890 63 ntBASIC-2.16□□□□□ -2.76
CCDC40Q4G0X9 Y_RNA.223-201ENST00000364290 113 ntBASIC-2.17□□□□□ -2.76
CCDC40Q4G0X9 Y_RNA.316-201ENST00000365118 111 ntBASIC-2.17□□□□□ -2.76
CCDC40Q4G0X9 RNU6-919P-201ENST00000516731 104 ntBASIC-2.17□□□□□ -2.76
CCDC40Q4G0X9 MIR664A-201ENST00000626086 82 ntBASIC-2.17□□□□□ -2.76
CCDC40Q4G0X9 Y_RNA.313-201ENST00000365095 103 ntBASIC-2.18□□□□□ -2.76
CCDC40Q4G0X9 RNU6-995P-201ENST00000391244 107 ntBASIC-2.19□□□□□ -2.76
CCDC40Q4G0X9 AC108019.1-201ENST00000512540 175 ntBASIC-2.19□□□□□ -2.76
CCDC40Q4G0X9 Y_RNA.699-201ENST00000516803 93 ntBASIC-2.19□□□□□ -2.76
CCDC40Q4G0X9 SPRY4-IT1_2.1-201ENST00000612613 121 ntBASIC-2.19□□□□□ -2.76
CCDC40Q4G0X9 RNU6-247P-201ENST00000362636 107 ntBASIC-2.2□□□□□ -2.76
CCDC40Q4G0X9 RNU6-215P-201ENST00000365169 102 ntBASIC-2.2□□□□□ -2.76
CCDC40Q4G0X9 RNU6-979P-201ENST00000383896 107 ntBASIC-2.2□□□□□ -2.76
CCDC40Q4G0X9 SNORD1B-201ENST00000363091 84 ntBASIC-2.21□□□□□ -2.76
CCDC40Q4G0X9 RNU6-1241P-201ENST00000384536 107 ntBASIC-2.21□□□□□ -2.76
CCDC40Q4G0X9 MIR4756-201ENST00000577874 78 ntBASIC-2.21□□□□□ -2.76
CCDC40Q4G0X9 Y_RNA.781-201ENST00000620301 103 ntBASIC-2.21□□□□□ -2.76
CCDC40Q4G0X9 Y_RNA.73-201ENST00000362910 113 ntBASIC-2.22□□□□□ -2.76
CCDC40Q4G0X9 RNU6-1081P-201ENST00000384537 107 ntBASIC-2.22□□□□□ -2.76
CCDC40Q4G0X9 AL606753.1-201ENST00000427435 87 ntBASIC-2.22□□□□□ -2.76
CCDC40Q4G0X9 RNU6ATAC32P-201ENST00000516026 76 ntBASIC-2.22□□□□□ -2.76
CCDC40Q4G0X9 AC120024.2-201ENST00000576526 175 ntBASIC-2.22□□□□□ -2.76
CCDC40Q4G0X9 Y_RNA.175-201ENST00000363794 111 ntBASIC-2.23□□□□□ -2.77
CCDC40Q4G0X9 SNORD20-201ENST00000384550 80 ntBASIC-2.23□□□□□ -2.77
CCDC40Q4G0X9 RNU6-895P-201ENST00000384125 103 ntBASIC-2.24□□□□□ -2.77
CCDC40Q4G0X9 MIR154-201ENST00000385243 84 ntBASIC-2.24□□□□□ -2.77
CCDC40Q4G0X9 RNU6-695P-201ENST00000391157 104 ntBASIC-2.24□□□□□ -2.77
CCDC40Q4G0X9 RNU7-171P-201ENST00000459581 62 ntBASIC-2.24□□□□□ -2.77
CCDC40Q4G0X9 RNU6-70P-201ENST00000516438 60 ntBASIC-2.24□□□□□ -2.77
CCDC40Q4G0X9 RNU6-118P-201ENST00000516552 102 ntBASIC-2.24□□□□□ -2.77
CCDC40Q4G0X9 RNU6-1131P-201ENST00000364955 107 ntBASIC-2.25□□□□□ -2.77
CCDC40Q4G0X9 ST7-OT3_1.1-201ENST00000619607 74 ntBASIC-2.25□□□□□ -2.77
CCDC40Q4G0X9 MIR1245B-201ENST00000636115 69 ntBASIC-2.25□□□□□ -2.77
CCDC40Q4G0X9 RNU7-151P-201ENST00000516930 53 ntBASIC-2.26□□□□□ -2.77
CCDC40Q4G0X9 SNORA27.2-201ENST00000363365 126 ntBASIC-2.27□□□□□ -2.77
CCDC40Q4G0X9 RNU6-49P-201ENST00000384256 107 ntBASIC-2.27□□□□□ -2.77
CCDC40Q4G0X9 SNORD116-24-201ENST00000384549 92 ntBASIC-2.27□□□□□ -2.77
CCDC40Q4G0X9 RNU6-1247P-201ENST00000516622 98 ntBASIC-2.27□□□□□ -2.77
Retrieved 100 of 98,524 protein–RNA pairs in 13.6 ms