Protein–RNA interactions for Protein: Q3V6T2

CCDC88A, Girdin, humanhuman

Predictions only

Length 1,871 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88AQ3V6T2 U6.95-201ENST00000636931 70 ntBASIC-2.5□□□□□ -2.81
CCDC88AQ3V6T2 AC006160.2-201ENST00000637708 154 ntBASIC-2.5□□□□□ -2.81
CCDC88AQ3V6T2 RNU4-88P-201ENST00000411220 86 ntBASIC-2.51□□□□□ -2.81
CCDC88AQ3V6T2 RNU6-669P-201ENST00000365575 107 ntBASIC-2.52□□□□□ -2.81
CCDC88AQ3V6T2 SNORA8.1-201ENST00000384250 140 ntBASIC-2.52□□□□□ -2.81
CCDC88AQ3V6T2 MIR590-201ENST00000385008 97 ntBASIC-2.52□□□□□ -2.81
CCDC88AQ3V6T2 snoU13.10-201ENST00000459301 103 ntBASIC-2.52□□□□□ -2.81
CCDC88AQ3V6T2 LMBR1-222ENST00000638959 93 ntTSL 5 BASIC-2.52□□□□□ -2.81
CCDC88AQ3V6T2 MIR379-201ENST00000362218 67 ntBASIC-2.53□□□□□ -2.81
CCDC88AQ3V6T2 RNU6-230P-201ENST00000362457 104 ntBASIC-2.53□□□□□ -2.81
CCDC88AQ3V6T2 SNORD1B-201ENST00000363091 84 ntBASIC-2.53□□□□□ -2.81
CCDC88AQ3V6T2 SNORD45.1-201ENST00000363181 77 ntBASIC-2.53□□□□□ -2.81
CCDC88AQ3V6T2 RNU6-106P-201ENST00000384405 107 ntBASIC-2.53□□□□□ -2.81
CCDC88AQ3V6T2 Y_RNA.607-201ENST00000410597 98 ntBASIC-2.53□□□□□ -2.81
CCDC88AQ3V6T2 RNU6-557P-201ENST00000516842 110 ntBASIC-2.53□□□□□ -2.81
CCDC88AQ3V6T2 RNU6-388P-201ENST00000517012 105 ntBASIC-2.53□□□□□ -2.81
CCDC88AQ3V6T2 RNU6-389P-201ENST00000517048 105 ntBASIC-2.53□□□□□ -2.81
CCDC88AQ3V6T2 AC013734.1-201ENST00000619329 111 ntBASIC-2.53□□□□□ -2.81
CCDC88AQ3V6T2 MIR466-201ENST00000580653 84 ntBASIC-2.54□□□□□ -2.82
CCDC88AQ3V6T2 RNU6-804P-201ENST00000384286 107 ntBASIC-2.54□□□□□ -2.82
CCDC88AQ3V6T2 TRAJ53-201ENST00000390485 66 ntAPPRIS P1 BASIC-2.54□□□□□ -2.82
CCDC88AQ3V6T2 RNU6-659P-201ENST00000516454 104 ntBASIC-2.54□□□□□ -2.82
CCDC88AQ3V6T2 MIR4668-201ENST00000582284 70 ntBASIC-2.54□□□□□ -2.82
CCDC88AQ3V6T2 MIR4748-201ENST00000578076 82 ntBASIC-2.55□□□□□ -2.82
CCDC88AQ3V6T2 MIR4503-201ENST00000582187 83 ntBASIC-2.55□□□□□ -2.82
CCDC88AQ3V6T2 Y_RNA.620-201ENST00000411009 88 ntBASIC-2.56□□□□□ -2.82
CCDC88AQ3V6T2 RNU7-200P-201ENST00000516105 62 ntBASIC-2.56□□□□□ -2.82
CCDC88AQ3V6T2 RNU6-542P-201ENST00000516405 103 ntBASIC-2.56□□□□□ -2.82
CCDC88AQ3V6T2 Y_RNA.501-201ENST00000384467 103 ntBASIC-2.56□□□□□ -2.82
CCDC88AQ3V6T2 Y_RNA.649-201ENST00000459077 103 ntBASIC-2.56□□□□□ -2.82
CCDC88AQ3V6T2 Y_RNA.699-201ENST00000516803 93 ntBASIC-2.56□□□□□ -2.82
CCDC88AQ3V6T2 RNU6-971P-201ENST00000516920 106 ntBASIC-2.56□□□□□ -2.82
CCDC88AQ3V6T2 SMAD5-AS1_3.1-201ENST00000614187 124 ntBASIC-2.56□□□□□ -2.82
CCDC88AQ3V6T2 MIR7978-201ENST00000636158 59 ntBASIC-2.56□□□□□ -2.82
CCDC88AQ3V6T2 RNU6-598P-201ENST00000364017 105 ntBASIC-2.57□□□□□ -2.82
CCDC88AQ3V6T2 Y_RNA.604-201ENST00000410574 102 ntBASIC-2.57□□□□□ -2.82
CCDC88AQ3V6T2 Y_RNA.397-201ENST00000383950 98 ntBASIC-2.58□□□□□ -2.82
CCDC88AQ3V6T2 RNU6-1081P-201ENST00000384537 107 ntBASIC-2.58□□□□□ -2.82
CCDC88AQ3V6T2 RNU6-987P-201ENST00000384759 104 ntBASIC-2.58□□□□□ -2.82
CCDC88AQ3V6T2 RNU6-995P-201ENST00000391244 107 ntBASIC-2.58□□□□□ -2.82
CCDC88AQ3V6T2 MTRNR2L9-201ENST00000622562 75 ntBASIC-2.58□□□□□ -2.82
CCDC88AQ3V6T2 RNA5SP173-201ENST00000364857 136 ntBASIC-2.58□□□□□ -2.82
CCDC88AQ3V6T2 RNU6-1325P-201ENST00000364905 105 ntBASIC-2.58□□□□□ -2.82
CCDC88AQ3V6T2 SNORD116-21-201ENST00000384507 92 ntBASIC-2.58□□□□□ -2.82
CCDC88AQ3V6T2 Y_RNA.511-201ENST00000384514 103 ntBASIC-2.58□□□□□ -2.82
CCDC88AQ3V6T2 RNU6-1212P-201ENST00000517023 104 ntBASIC-2.58□□□□□ -2.82
CCDC88AQ3V6T2 Y_RNA.290-201ENST00000364879 114 ntBASIC-2.59□□□□□ -2.82
CCDC88AQ3V6T2 SNORA19-201ENST00000384737 128 ntBASIC-2.6□□□□□ -2.83
CCDC88AQ3V6T2 RNY4P9-201ENST00000363194 97 ntBASIC-2.6□□□□□ -2.83
CCDC88AQ3V6T2 RNU6-402P-201ENST00000410678 103 ntBASIC-2.6□□□□□ -2.83
CCDC88AQ3V6T2 RNY1P1-201ENST00000364372 112 ntBASIC-2.61□□□□□ -2.83
CCDC88AQ3V6T2 Y_RNA.506-201ENST00000384494 102 ntBASIC-2.61□□□□□ -2.83
CCDC88AQ3V6T2 SNORA41B-201ENST00000384785 128 ntBASIC-2.61□□□□□ -2.83
CCDC88AQ3V6T2 AC093729.1-201ENST00000513074 128 ntBASIC-2.61□□□□□ -2.83
CCDC88AQ3V6T2 RNU6-766P-201ENST00000362478 107 ntBASIC-2.62□□□□□ -2.83
CCDC88AQ3V6T2 MIR548N-201ENST00000408742 75 ntBASIC-2.62□□□□□ -2.83
CCDC88AQ3V6T2 hsa-mir-4773-1.1-201ENST00000585225 78 ntBASIC-2.62□□□□□ -2.83
CCDC88AQ3V6T2 Y_RNA.109-201ENST00000363215 102 ntBASIC-2.62□□□□□ -2.83
CCDC88AQ3V6T2 Y_RNA.349-201ENST00000365406 102 ntBASIC-2.62□□□□□ -2.83
CCDC88AQ3V6T2 RNU6-523P-201ENST00000516304 54 ntBASIC-2.62□□□□□ -2.83
CCDC88AQ3V6T2 MIR548C-201ENST00000384815 97 ntBASIC-2.63□□□□□ -2.83
CCDC88AQ3V6T2 SPRY4-IT1_2.1-201ENST00000612613 121 ntBASIC-2.63□□□□□ -2.83
CCDC88AQ3V6T2 RNU6-162P-201ENST00000516228 103 ntBASIC-2.64□□□□□ -2.83
CCDC88AQ3V6T2 AP001318.4-201ENST00000616637 121 ntBASIC-2.64□□□□□ -2.83
CCDC88AQ3V6T2 U6.97-201ENST00000636904 101 ntBASIC-2.64□□□□□ -2.83
CCDC88AQ3V6T2 MIRLET7A1-201ENST00000362295 80 ntBASIC-2.65□□□□□ -2.83
CCDC88AQ3V6T2 Y_RNA.273-201ENST00000364703 102 ntBASIC-2.65□□□□□ -2.83
CCDC88AQ3V6T2 RNY1P5-201ENST00000383890 115 ntBASIC-2.65□□□□□ -2.83
CCDC88AQ3V6T2 FTX_4.1-201ENST00000616291 147 ntBASIC-2.65□□□□□ -2.83
CCDC88AQ3V6T2 Y_RNA.139-201ENST00000363464 102 ntBASIC-2.65□□□□□ -2.83
CCDC88AQ3V6T2 AL117351.2-201ENST00000513571 157 ntBASIC-2.65□□□□□ -2.83
CCDC88AQ3V6T2 RNU6-361P-201ENST00000364454 107 ntBASIC-2.66□□□□□ -2.84
CCDC88AQ3V6T2 RNU6-554P-201ENST00000410466 106 ntBASIC-2.66□□□□□ -2.84
CCDC88AQ3V6T2 RNU6-497P-201ENST00000365316 104 ntBASIC-2.67□□□□□ -2.84
CCDC88AQ3V6T2 Y_RNA.513-201ENST00000384522 100 ntBASIC-2.67□□□□□ -2.84
CCDC88AQ3V6T2 MIR1302-5-201ENST00000408164 150 ntBASIC-2.67□□□□□ -2.84
CCDC88AQ3V6T2 Y_RNA.544-201ENST00000384650 113 ntBASIC-2.68□□□□□ -2.84
CCDC88AQ3V6T2 RNU6-330P-201ENST00000363015 107 ntBASIC-2.69□□□□□ -2.84
CCDC88AQ3V6T2 RNU6-668P-201ENST00000364180 107 ntBASIC-2.69□□□□□ -2.84
CCDC88AQ3V6T2 Y_RNA.532-201ENST00000384590 113 ntBASIC-2.69□□□□□ -2.84
CCDC88AQ3V6T2 RNU6ATAC23P-201ENST00000408448 123 ntBASIC-2.69□□□□□ -2.84
CCDC88AQ3V6T2 RNU6-959P-201ENST00000384671 107 ntBASIC-2.7□□□□□ -2.84
CCDC88AQ3V6T2 MIR125B1-201ENST00000385236 88 ntBASIC-2.71□□□□□ -2.84
CCDC88AQ3V6T2 MIR154-201ENST00000385243 84 ntBASIC-2.71□□□□□ -2.84
CCDC88AQ3V6T2 RNY3P8-201ENST00000411366 126 ntBASIC-2.71□□□□□ -2.84
CCDC88AQ3V6T2 SNORD63.2-201ENST00000516303 64 ntBASIC-2.71□□□□□ -2.84
CCDC88AQ3V6T2 RNU6-686P-201ENST00000364839 107 ntBASIC-2.71□□□□□ -2.84
CCDC88AQ3V6T2 Y_RNA.647-201ENST00000459194 112 ntBASIC-2.71□□□□□ -2.84
CCDC88AQ3V6T2 Y_RNA.640-201ENST00000459296 112 ntBASIC-2.71□□□□□ -2.84
CCDC88AQ3V6T2 Y_RNA.803-201ENST00000614432 112 ntBASIC-2.71□□□□□ -2.84
CCDC88AQ3V6T2 Y_RNA.815-201ENST00000616655 112 ntBASIC-2.71□□□□□ -2.84
CCDC88AQ3V6T2 Y_RNA.795-201ENST00000619475 112 ntBASIC-2.71□□□□□ -2.84
CCDC88AQ3V6T2 Y_RNA.827-201ENST00000638104 112 ntBASIC-2.71□□□□□ -2.84
CCDC88AQ3V6T2 RNU6-886P-201ENST00000384319 105 ntBASIC-2.72□□□□□ -2.84
CCDC88AQ3V6T2 AP001094.1-201ENST00000579805 193 ntBASIC-2.72□□□□□ -2.84
CCDC88AQ3V6T2 LEKR1-212ENST00000640869 237 ntTSL 5 BASIC-2.72□□□□□ -2.84
CCDC88AQ3V6T2 RNU6-649P-201ENST00000384463 107 ntBASIC-2.73□□□□□ -2.85
CCDC88AQ3V6T2 RNU6-604P-201ENST00000390917 100 ntBASIC-2.73□□□□□ -2.85
CCDC88AQ3V6T2 SNORA40.13-201ENST00000516379 120 ntBASIC-2.73□□□□□ -2.85
CCDC88AQ3V6T2 Y_RNA.291-201ENST00000364886 113 ntBASIC-2.73□□□□□ -2.85
Retrieved 100 of 98,524 protein–RNA pairs in 8.3 ms