Protein–RNA interactions for Protein: Q12873

CHD3, Chromodomain-helicase-DNA-binding protein 3, humanhuman

Known RBP Predictions only

Length 2,000 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHD3Q12873 RNU6-330P-201ENST00000363015 107 ntBASIC-1.9□□□□□ -2.71
CHD3Q12873 RNU4-40P-201ENST00000364351 143 ntBASIC-1.9□□□□□ -2.71
CHD3Q12873 RNU6-604P-201ENST00000390917 100 ntBASIC-1.9□□□□□ -2.71
CHD3Q12873 RNU6-172P-201ENST00000411000 93 ntBASIC-1.9□□□□□ -2.71
CHD3Q12873 RNU6-162P-201ENST00000516228 103 ntBASIC-1.9□□□□□ -2.71
CHD3Q12873 AL157777.2-201ENST00000258070 137 ntBASIC-1.9□□□□□ -2.71
CHD3Q12873 RNU6-633P-201ENST00000362612 103 ntBASIC-1.9□□□□□ -2.71
CHD3Q12873 Y_RNA.59-201ENST00000362828 102 ntBASIC-1.9□□□□□ -2.71
CHD3Q12873 Y_RNA.607-201ENST00000410597 98 ntBASIC-1.9□□□□□ -2.71
CHD3Q12873 Y_RNA.343-201ENST00000365354 112 ntBASIC-1.91□□□□□ -2.71
CHD3Q12873 AL158147.1-201ENST00000443970 75 ntBASIC-1.91□□□□□ -2.71
CHD3Q12873 AC062037.2-201ENST00000610137 73 ntBASIC-1.91□□□□□ -2.71
CHD3Q12873 TRAJ33-201ENST00000390504 57 ntAPPRIS P1 BASIC-1.91□□□□□ -2.72
CHD3Q12873 MIR664A-201ENST00000626086 82 ntBASIC-1.91□□□□□ -2.72
CHD3Q12873 RNU6-668P-201ENST00000364180 107 ntBASIC-1.92□□□□□ -2.72
CHD3Q12873 SNORD116-22-201ENST00000384430 92 ntBASIC-1.92□□□□□ -2.72
CHD3Q12873 RNU6-520P-201ENST00000384717 104 ntBASIC-1.92□□□□□ -2.72
CHD3Q12873 SNORA17.4-201ENST00000391287 132 ntBASIC-1.92□□□□□ -2.72
CHD3Q12873 MIR548F4-201ENST00000408515 105 ntBASIC-1.92□□□□□ -2.72
CHD3Q12873 RNU7-107P-201ENST00000459121 61 ntBASIC-1.92□□□□□ -2.72
CHD3Q12873 RNU6-111P-201ENST00000517179 105 ntBASIC-1.92□□□□□ -2.72
CHD3Q12873 SMAD5-AS1_3.1-201ENST00000614187 124 ntBASIC-1.92□□□□□ -2.72
CHD3Q12873 MIR2052-201ENST00000636055 55 ntBASIC-1.92□□□□□ -2.72
CHD3Q12873 SNORA19-201ENST00000384737 128 ntBASIC-1.93□□□□□ -2.72
CHD3Q12873 MIR590-201ENST00000385008 97 ntBASIC-1.93□□□□□ -2.72
CHD3Q12873 SNORA20.1-201ENST00000364790 130 ntBASIC-1.93□□□□□ -2.72
CHD3Q12873 Y_RNA.290-201ENST00000364879 114 ntBASIC-1.93□□□□□ -2.72
CHD3Q12873 Y_RNA.297-201ENST00000364950 91 ntBASIC-1.93□□□□□ -2.72
CHD3Q12873 RNU6-196P-201ENST00000384315 107 ntBASIC-1.93□□□□□ -2.72
CHD3Q12873 Y_RNA.218-201ENST00000364218 104 ntBASIC-1.94□□□□□ -2.72
CHD3Q12873 Y_RNA.313-201ENST00000365095 103 ntBASIC-1.94□□□□□ -2.72
CHD3Q12873 RNY4P25-201ENST00000459254 96 ntBASIC-1.94□□□□□ -2.72
CHD3Q12873 SNORD60.1-201ENST00000362451 73 ntBASIC-1.95□□□□□ -2.72
CHD3Q12873 RNU6-1325P-201ENST00000364905 105 ntBASIC-1.95□□□□□ -2.72
CHD3Q12873 RNU6-1296P-201ENST00000383879 107 ntBASIC-1.95□□□□□ -2.72
CHD3Q12873 Y_RNA.580-201ENST00000391004 95 ntBASIC-1.95□□□□□ -2.72
CHD3Q12873 RNU7-120P-201ENST00000459334 63 ntBASIC-1.95□□□□□ -2.72
CHD3Q12873 RNU7-160P-201ENST00000516660 62 ntBASIC-1.95□□□□□ -2.72
CHD3Q12873 MIR4426-201ENST00000640330 63 ntBASIC-1.95□□□□□ -2.72
CHD3Q12873 Y_RNA.668-201ENST00000516233 93 ntBASIC-1.95□□□□□ -2.72
CHD3Q12873 AC008737.2-201ENST00000599446 118 ntBASIC-1.95□□□□□ -2.72
CHD3Q12873 MIRLET7A3-201ENST00000362116 74 ntBASIC-1.96□□□□□ -2.72
CHD3Q12873 Y_RNA.93-201ENST00000363066 109 ntBASIC-1.96□□□□□ -2.72
CHD3Q12873 Y_RNA.434-201ENST00000384090 100 ntBASIC-1.96□□□□□ -2.72
CHD3Q12873 Y_RNA.535-201ENST00000384612 99 ntBASIC-1.96□□□□□ -2.72
CHD3Q12873 MTATP8P2-201ENST00000435212 202 ntBASIC-1.96□□□□□ -2.72
CHD3Q12873 RNU6-1191P-201ENST00000516799 107 ntBASIC-1.96□□□□□ -2.72
CHD3Q12873 RNU6-345P-201ENST00000517001 107 ntBASIC-1.96□□□□□ -2.72
CHD3Q12873 RNU6-1324P-201ENST00000384222 107 ntBASIC-1.96□□□□□ -2.72
CHD3Q12873 Y_RNA.460-201ENST00000384255 102 ntBASIC-1.96□□□□□ -2.72
CHD3Q12873 MIR606-201ENST00000384851 96 ntBASIC-1.96□□□□□ -2.72
CHD3Q12873 Y_RNA.620-201ENST00000411009 88 ntBASIC-1.96□□□□□ -2.72
CHD3Q12873 Y_RNA.202-201ENST00000364083 110 ntBASIC-1.97□□□□□ -2.72
CHD3Q12873 RNU6-738P-201ENST00000384531 106 ntBASIC-1.97□□□□□ -2.72
CHD3Q12873 SNORA40-201ENST00000388090 126 ntBASIC-1.97□□□□□ -2.72
CHD3Q12873 RNU6-557P-201ENST00000516842 110 ntBASIC-1.97□□□□□ -2.72
CHD3Q12873 RNU6-230P-201ENST00000362457 104 ntBASIC-1.98□□□□□ -2.73
CHD3Q12873 SNORA40B-201ENST00000385573 128 ntBASIC-1.98□□□□□ -2.73
CHD3Q12873 SNORD116.2-201ENST00000391251 93 ntBASIC-1.98□□□□□ -2.73
CHD3Q12873 RNU6-394P-201ENST00000410735 107 ntBASIC-1.98□□□□□ -2.73
CHD3Q12873 MIRLET7A1-201ENST00000362295 80 ntBASIC-1.98□□□□□ -2.73
CHD3Q12873 SNORD45.2-201ENST00000363552 72 ntBASIC-1.98□□□□□ -2.73
CHD3Q12873 SNORA25.5-201ENST00000363782 126 ntBASIC-1.98□□□□□ -2.73
CHD3Q12873 MTCYBP9-201ENST00000431021 303 ntBASIC-1.98□□□□□ -2.73
CHD3Q12873 AL117187.1-201ENST00000555482 181 ntBASIC-1.98□□□□□ -2.73
CHD3Q12873 MIR4668-201ENST00000582284 70 ntBASIC-1.98□□□□□ -2.73
CHD3Q12873 MIAT_exon5_2.1-201ENST00000613562 85 ntBASIC-1.98□□□□□ -2.73
CHD3Q12873 Y_RNA.193-201ENST00000363979 102 ntBASIC-1.99□□□□□ -2.73
CHD3Q12873 RNU6-810P-201ENST00000364001 107 ntBASIC-1.99□□□□□ -2.73
CHD3Q12873 RNU6-402P-201ENST00000410678 103 ntBASIC-1.99□□□□□ -2.73
CHD3Q12873 Y_RNA.611-201ENST00000410682 108 ntBASIC-1.99□□□□□ -2.73
CHD3Q12873 Y_RNA.649-201ENST00000459077 103 ntBASIC-1.99□□□□□ -2.73
CHD3Q12873 RNU6-300P-201ENST00000459080 104 ntBASIC-1.99□□□□□ -2.73
CHD3Q12873 MTND5P41-201ENST00000517498 206 ntBASIC-1.99□□□□□ -2.73
CHD3Q12873 Y_RNA.17-201ENST00000362433 111 ntBASIC-2□□□□□ -2.73
CHD3Q12873 RNU6-70P-201ENST00000516438 60 ntBASIC-2□□□□□ -2.73
CHD3Q12873 RNU6-92P-201ENST00000605893 104 ntBASIC-2□□□□□ -2.73
CHD3Q12873 AC004792.1-201ENST00000614523 137 ntBASIC-2□□□□□ -2.73
CHD3Q12873 MIR3914-2-201ENST00000637339 95 ntBASIC-2□□□□□ -2.73
CHD3Q12873 RNU6-176P-201ENST00000517196 105 ntBASIC-2□□□□□ -2.73
CHD3Q12873 Y_RNA.830-201ENST00000628531 96 ntBASIC-2□□□□□ -2.73
CHD3Q12873 RNU6-1047P-201ENST00000364418 107 ntBASIC-2.01□□□□□ -2.73
CHD3Q12873 RNU6-828P-201ENST00000364876 107 ntBASIC-2.01□□□□□ -2.73
CHD3Q12873 Y_RNA.478-201ENST00000384358 107 ntBASIC-2.01□□□□□ -2.73
CHD3Q12873 MIR569-201ENST00000385228 96 ntBASIC-2.01□□□□□ -2.73
CHD3Q12873 RNU6-590P-201ENST00000365039 107 ntBASIC-2.01□□□□□ -2.73
CHD3Q12873 RNU6-530P-201ENST00000391180 107 ntBASIC-2.01□□□□□ -2.73
CHD3Q12873 RNU6-257P-201ENST00000410238 98 ntBASIC-2.01□□□□□ -2.73
CHD3Q12873 MTCYBP6-201ENST00000441810 138 ntBASIC-2.01□□□□□ -2.73
CHD3Q12873 Y_RNA.652-201ENST00000458902 102 ntBASIC-2.01□□□□□ -2.73
CHD3Q12873 RNU6-267P-201ENST00000516714 103 ntBASIC-2.01□□□□□ -2.73
CHD3Q12873 LMBR1-222ENST00000638959 93 ntTSL 5 BASIC-2.01□□□□□ -2.73
CHD3Q12873 MTATP8P1-201ENST00000467115 207 ntBASIC-2.02□□□□□ -2.73
CHD3Q12873 RNU6-971P-201ENST00000516920 106 ntBASIC-2.02□□□□□ -2.73
CHD3Q12873 RNU6-1015P-201ENST00000517121 99 ntBASIC-2.02□□□□□ -2.73
CHD3Q12873 MIR5693-201ENST00000577722 73 ntBASIC-2.02□□□□□ -2.73
CHD3Q12873 RNU6-797P-201ENST00000363101 109 ntBASIC-2.03□□□□□ -2.73
CHD3Q12873 Y_RNA.397-201ENST00000383950 98 ntBASIC-2.03□□□□□ -2.73
CHD3Q12873 RNU6-800P-201ENST00000384473 103 ntBASIC-2.03□□□□□ -2.73
CHD3Q12873 RNU6-1206P-201ENST00000516339 103 ntBASIC-2.03□□□□□ -2.73
Retrieved 100 of 98,524 protein–RNA pairs in 16.1 ms