Protein–RNA interactions for Protein: P39880

CUX1, Homeobox protein cut-like 1, humanhuman

Predictions only

Length 1,505 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1P39880 MIR1277-201ENST00000408536 78 ntBASIC-4.12□□□□□ -3.07
CUX1P39880 SCARNA23-201ENST00000516060 130 ntBASIC-4.12□□□□□ -3.07
CUX1P39880 U4.5-201ENST00000617137 123 ntBASIC-4.12□□□□□ -3.07
CUX1P39880 Y_RNA.206-201ENST00000364136 102 ntBASIC-4.13□□□□□ -3.07
CUX1P39880 AC069439.1-201ENST00000494739 167 ntBASIC-4.13□□□□□ -3.07
CUX1P39880 RNU6-789P-201ENST00000517105 102 ntBASIC-4.13□□□□□ -3.07
CUX1P39880 AL035470.1-201ENST00000622571 220 ntBASIC-4.13□□□□□ -3.07
CUX1P39880 RNU6-1241P-201ENST00000384536 107 ntBASIC-4.14□□□□□ -3.07
CUX1P39880 AC074348.1-201ENST00000426503 132 ntBASIC-4.14□□□□□ -3.07
CUX1P39880 Y_RNA.632-201ENST00000459189 102 ntBASIC-4.14□□□□□ -3.07
CUX1P39880 Y_RNA.58-201ENST00000362807 102 ntBASIC-4.15□□□□□ -3.07
CUX1P39880 RNU6-1227P-201ENST00000383981 107 ntBASIC-4.16□□□□□ -3.07
CUX1P39880 SNORA40B-201ENST00000385573 128 ntBASIC-4.16□□□□□ -3.07
CUX1P39880 RNU6-231P-201ENST00000517122 103 ntBASIC-4.16□□□□□ -3.07
CUX1P39880 RNU6-788P-201ENST00000390967 104 ntBASIC-4.16□□□□□ -3.08
CUX1P39880 DMD-AS3-201ENST00000439592 293 ntTSL 3 BASIC-4.16□□□□□ -3.08
CUX1P39880 Y_RNA.218-201ENST00000364218 104 ntBASIC-4.17□□□□□ -3.08
CUX1P39880 Y_RNA.260-201ENST00000364628 101 ntBASIC-4.18□□□□□ -3.08
CUX1P39880 AP001318.4-201ENST00000616637 121 ntBASIC-4.18□□□□□ -3.08
CUX1P39880 SNORD58C-201ENST00000365223 64 ntBASIC-4.19□□□□□ -3.08
CUX1P39880 SNORD19B-201ENST00000459623 84 ntBASIC-4.19□□□□□ -3.08
CUX1P39880 RNU6-1061P-201ENST00000516530 99 ntBASIC-4.2□□□□□ -3.08
CUX1P39880 SOX2OT_exon4.1-201ENST00000610449 109 ntBASIC-4.2□□□□□ -3.08
CUX1P39880 RNU6-402P-201ENST00000410678 103 ntBASIC-4.21□□□□□ -3.08
CUX1P39880 RNA5SP449-201ENST00000516871 130 ntBASIC-4.21□□□□□ -3.08
CUX1P39880 RNU6-988P-201ENST00000519081 107 ntBASIC-4.21□□□□□ -3.08
CUX1P39880 SNORD115.2-201ENST00000391126 59 ntBASIC-4.21□□□□□ -3.08
CUX1P39880 AC113195.1-201ENST00000579952 141 ntBASIC-4.21□□□□□ -3.08
CUX1P39880 U6.104-201ENST00000637979 90 ntBASIC-4.21□□□□□ -3.08
CUX1P39880 RNU6-836P-201ENST00000362920 107 ntBASIC-4.22□□□□□ -3.09
CUX1P39880 SNORD116-4-201ENST00000384733 96 ntBASIC-4.22□□□□□ -3.09
CUX1P39880 TRAJ53-201ENST00000390485 66 ntAPPRIS P1 BASIC-4.22□□□□□ -3.09
CUX1P39880 RNU6-876P-201ENST00000391295 104 ntBASIC-4.22□□□□□ -3.09
CUX1P39880 TMSB4XP3-201ENST00000445144 114 ntBASIC-4.22□□□□□ -3.09
CUX1P39880 RNU6-422P-201ENST00000384632 107 ntBASIC-4.23□□□□□ -3.09
CUX1P39880 MIR1297-201ENST00000637311 77 ntBASIC-4.23□□□□□ -3.09
CUX1P39880 RNU6-557P-201ENST00000516842 110 ntBASIC-4.24□□□□□ -3.09
CUX1P39880 RNU6-92P-201ENST00000605893 104 ntBASIC-4.24□□□□□ -3.09
CUX1P39880 RNU6-574P-201ENST00000384265 107 ntBASIC-4.25□□□□□ -3.09
CUX1P39880 SNORD45A-201ENST00000384512 84 ntBASIC-4.25□□□□□ -3.09
CUX1P39880 RNU6-1219P-201ENST00000516143 112 ntBASIC-4.25□□□□□ -3.09
CUX1P39880 SNORA40.16-201ENST00000517238 121 ntBASIC-4.25□□□□□ -3.09
CUX1P39880 Y_RNA.160-201ENST00000363677 92 ntBASIC-4.26□□□□□ -3.09
CUX1P39880 AC093729.1-201ENST00000513074 128 ntBASIC-4.26□□□□□ -3.09
CUX1P39880 SNORD60.1-201ENST00000362451 73 ntBASIC-4.26□□□□□ -3.09
CUX1P39880 TRAJ9-201ENST00000390528 61 ntAPPRIS P1 BASIC-4.26□□□□□ -3.09
CUX1P39880 Y_RNA.579-201ENST00000390939 94 ntBASIC-4.26□□□□□ -3.09
CUX1P39880 MTND3P3-201ENST00000505004 126 ntBASIC-4.26□□□□□ -3.09
CUX1P39880 Y_RNA.335-201ENST00000365299 96 ntBASIC-4.27□□□□□ -3.09
CUX1P39880 RNU6-196P-201ENST00000384315 107 ntBASIC-4.28□□□□□ -3.09
CUX1P39880 MT-TL1-201ENST00000386347 75 ntBASIC-4.28□□□□□ -3.09
CUX1P39880 RNU6-718P-201ENST00000516166 105 ntBASIC-4.28□□□□□ -3.09
CUX1P39880 MIR3974-201ENST00000637126 96 ntBASIC-4.28□□□□□ -3.09
CUX1P39880 MIR1302-1-201ENST00000637932 143 ntBASIC-4.28□□□□□ -3.09
CUX1P39880 RNU6-686P-201ENST00000364839 107 ntBASIC-4.29□□□□□ -3.1
CUX1P39880 SNORD58.1-201ENST00000391313 66 ntBASIC-4.3□□□□□ -3.1
CUX1P39880 U7.2-201ENST00000607576 63 ntBASIC-4.3□□□□□ -3.1
CUX1P39880 RNU6-1325P-201ENST00000364905 105 ntBASIC-4.31□□□□□ -3.1
CUX1P39880 Y_RNA.586-201ENST00000391146 98 ntBASIC-4.31□□□□□ -3.1
CUX1P39880 RNU7-61P-201ENST00000515897 61 ntBASIC-4.31□□□□□ -3.1
CUX1P39880 SNORA81.3-201ENST00000517283 198 ntBASIC-4.31□□□□□ -3.1
CUX1P39880 RNU6-633P-201ENST00000362612 103 ntBASIC-4.31□□□□□ -3.1
CUX1P39880 MIR548AI-201ENST00000579940 88 ntBASIC-4.31□□□□□ -3.1
CUX1P39880 AC139792.2-201ENST00000624218 587 ntBASIC-4.31□□□□□ -3.1
CUX1P39880 Y_RNA.70-201ENST00000362886 110 ntBASIC-4.32□□□□□ -3.1
CUX1P39880 RNU6-1135P-201ENST00000411083 103 ntBASIC-4.32□□□□□ -3.1
CUX1P39880 SNORA63.4-201ENST00000362763 126 ntBASIC-4.33□□□□□ -3.1
CUX1P39880 Y_RNA.202-201ENST00000364083 110 ntBASIC-4.33□□□□□ -3.1
CUX1P39880 Y_RNA.459-201ENST00000384251 102 ntBASIC-4.33□□□□□ -3.1
CUX1P39880 RNU6-1211P-201ENST00000459179 105 ntBASIC-4.33□□□□□ -3.1
CUX1P39880 Y_RNA.532-201ENST00000384590 113 ntBASIC-4.34□□□□□ -3.1
CUX1P39880 RNU6-904P-201ENST00000516206 101 ntBASIC-4.34□□□□□ -3.1
CUX1P39880 RNU6-542P-201ENST00000516405 103 ntBASIC-4.34□□□□□ -3.1
CUX1P39880 RNU6-419P-201ENST00000517030 63 ntBASIC-4.34□□□□□ -3.1
CUX1P39880 SNORA33.2-201ENST00000365413 134 ntBASIC-4.35□□□□□ -3.11
CUX1P39880 MIR545-201ENST00000385085 106 ntBASIC-4.35□□□□□ -3.11
CUX1P39880 RNU6-659P-201ENST00000516454 104 ntBASIC-4.35□□□□□ -3.11
CUX1P39880 Y_RNA.717-201ENST00000517106 92 ntBASIC-4.35□□□□□ -3.11
CUX1P39880 Y_RNA.194-201ENST00000363985 102 ntBASIC-4.36□□□□□ -3.11
CUX1P39880 RNU6-713P-201ENST00000384761 107 ntBASIC-4.36□□□□□ -3.11
CUX1P39880 MIR363-201ENST00000384840 75 ntBASIC-4.36□□□□□ -3.11
CUX1P39880 RNU6-1015P-201ENST00000517121 99 ntBASIC-4.36□□□□□ -3.11
CUX1P39880 MIRLET7A1-201ENST00000362295 80 ntBASIC-4.36□□□□□ -3.11
CUX1P39880 MIR548F1-201ENST00000408667 84 ntBASIC-4.36□□□□□ -3.11
CUX1P39880 MIR4484-201ENST00000582855 83 ntBASIC-4.36□□□□□ -3.11
CUX1P39880 MIR4317-201ENST00000637586 65 ntBASIC-4.36□□□□□ -3.11
CUX1P39880 RNU4-85P-201ENST00000364675 123 ntBASIC-4.37□□□□□ -3.11
CUX1P39880 SNORD116-24-201ENST00000384549 92 ntBASIC-4.37□□□□□ -3.11
CUX1P39880 TRGJP-201ENST00000390338 61 ntAPPRIS P1 BASIC-4.39□□□□□ -3.11
CUX1P39880 RNU6-162P-201ENST00000516228 103 ntBASIC-4.39□□□□□ -3.11
CUX1P39880 U7.3-201ENST00000616123 62 ntBASIC-4.39□□□□□ -3.11
CUX1P39880 MIR664A-201ENST00000626086 82 ntBASIC-4.39□□□□□ -3.11
CUX1P39880 AL157777.2-201ENST00000258070 137 ntBASIC-4.4□□□□□ -3.11
CUX1P39880 Y_RNA.219-201ENST00000364232 113 ntBASIC-4.4□□□□□ -3.11
CUX1P39880 RNU6-1020P-201ENST00000363684 107 ntBASIC-4.41□□□□□ -3.12
CUX1P39880 AC141273.2-201ENST00000618989 130 ntBASIC-4.41□□□□□ -3.12
CUX1P39880 MIR8062-201ENST00000621515 85 ntBASIC-4.41□□□□□ -3.12
CUX1P39880 Y_RNA.272-201ENST00000364696 102 ntBASIC-4.42□□□□□ -3.12
CUX1P39880 MTATP8P2-201ENST00000435212 202 ntBASIC-4.43□□□□□ -3.12
CUX1P39880 AC022559.1-201ENST00000520905 205 ntBASIC-4.43□□□□□ -3.12
Retrieved 100 of 98,524 protein–RNA pairs in 209.1 ms