Protein–RNA interactions for Protein: P27694

RPA1, Replication protein A 70 kDa DNA-binding subunit, humanhuman

Predictions only

Length 616 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RPA1P27694 MIR6738-201ENST00000619620 64 ntBASIC-0.94□□□□□ -2.56
RPA1P27694 RNA5SP26-201ENST00000362406 119 ntBASIC-0.95□□□□□ -2.56
RPA1P27694 RNU6-242P-201ENST00000384359 107 ntBASIC-0.95□□□□□ -2.56
RPA1P27694 SNORA41B-201ENST00000384785 128 ntBASIC-0.95□□□□□ -2.56
RPA1P27694 RNU6-668P-201ENST00000364180 107 ntBASIC-0.96□□□□□ -2.56
RPA1P27694 MIR527-201ENST00000385244 85 ntBASIC-0.96□□□□□ -2.56
RPA1P27694 MIR8053-201ENST00000613344 75 ntBASIC-0.96□□□□□ -2.56
RPA1P27694 U2.18-201ENST00000622185 84 ntBASIC-0.96□□□□□ -2.56
RPA1P27694 RNU6-1262P-201ENST00000516217 96 ntBASIC-0.97□□□□□ -2.56
RPA1P27694 RNA5SP476-201ENST00000516613 103 ntBASIC-0.97□□□□□ -2.56
RPA1P27694 RNU6-1236P-201ENST00000517080 99 ntBASIC-0.97□□□□□ -2.56
RPA1P27694 uc_338.19-201ENST00000616808 99 ntBASIC-0.97□□□□□ -2.56
RPA1P27694 RNA5SP173-201ENST00000364857 136 ntBASIC-0.98□□□□□ -2.57
RPA1P27694 RNU6-820P-201ENST00000384273 107 ntBASIC-0.98□□□□□ -2.57
RPA1P27694 RNU6-380P-201ENST00000410207 107 ntBASIC-0.98□□□□□ -2.57
RPA1P27694 RPL35AP4-201ENST00000412007 102 ntBASIC-0.98□□□□□ -2.57
RPA1P27694 MTND4LP1-201ENST00000446263 157 ntBASIC-0.98□□□□□ -2.57
RPA1P27694 MIR378F-201ENST00000578143 78 ntBASIC-0.98□□□□□ -2.57
RPA1P27694 MIR154-201ENST00000385243 84 ntBASIC-0.99□□□□□ -2.57
RPA1P27694 RNU6-228P-201ENST00000362700 106 ntBASIC-1□□□□□ -2.57
RPA1P27694 RNU6-10P-201ENST00000384036 107 ntBASIC-1□□□□□ -2.57
RPA1P27694 MIR507-201ENST00000385234 94 ntBASIC-1□□□□□ -2.57
RPA1P27694 RNY4P29-201ENST00000410801 97 ntBASIC-1□□□□□ -2.57
RPA1P27694 RNA5SP67-201ENST00000516422 131 ntBASIC-1□□□□□ -2.57
RPA1P27694 RNU6-1015P-201ENST00000517121 99 ntBASIC-1□□□□□ -2.57
RPA1P27694 MIR5683-201ENST00000636514 76 ntBASIC-1□□□□□ -2.57
RPA1P27694 RNU6-1216P-201ENST00000362590 107 ntBASIC-1.01□□□□□ -2.57
RPA1P27694 RNU6-1255P-201ENST00000363434 112 ntBASIC-1.01□□□□□ -2.57
RPA1P27694 RNA5SP215-201ENST00000363440 122 ntBASIC-1.01□□□□□ -2.57
RPA1P27694 MIR520D-201ENST00000385002 87 ntBASIC-1.01□□□□□ -2.57
RPA1P27694 AL353691.2-201ENST00000443795 59 ntBASIC-1.01□□□□□ -2.57
RPA1P27694 RNU6-523P-201ENST00000516304 54 ntBASIC-1.01□□□□□ -2.57
RPA1P27694 Y_RNA.375-201ENST00000365625 101 ntBASIC-1.02□□□□□ -2.57
RPA1P27694 RNU6-24P-201ENST00000384440 107 ntBASIC-1.02□□□□□ -2.57
RPA1P27694 RNU6-696P-201ENST00000390834 107 ntBASIC-1.02□□□□□ -2.57
RPA1P27694 SNORD57-201ENST00000448188 72 ntBASIC-1.02□□□□□ -2.57
RPA1P27694 snoU83B.1-201ENST00000517136 88 ntBASIC-1.02□□□□□ -2.57
RPA1P27694 MIR587-201ENST00000384845 96 ntBASIC-1.03□□□□□ -2.57
RPA1P27694 MIR1255A-201ENST00000408338 113 ntBASIC-1.03□□□□□ -2.57
RPA1P27694 MIR6818-201ENST00000621576 65 ntBASIC-1.03□□□□□ -2.57
RPA1P27694 RNU6-1124P-201ENST00000384169 107 ntBASIC-1.04□□□□□ -2.58
RPA1P27694 MIR548Q-201ENST00000408404 100 ntBASIC-1.04□□□□□ -2.58
RPA1P27694 SNORD1B-201ENST00000363091 84 ntBASIC-1.05□□□□□ -2.58
RPA1P27694 SNORD116-16-201ENST00000384533 92 ntBASIC-1.05□□□□□ -2.58
RPA1P27694 RNU6-540P-201ENST00000384622 101 ntBASIC-1.05□□□□□ -2.58
RPA1P27694 RNU6-630P-201ENST00000391258 106 ntBASIC-1.05□□□□□ -2.58
RPA1P27694 MIR889-201ENST00000401280 79 ntBASIC-1.05□□□□□ -2.58
RPA1P27694 RNA5SP192-201ENST00000364404 120 ntBASIC-1.07□□□□□ -2.58
RPA1P27694 RNU6-895P-201ENST00000384125 103 ntBASIC-1.07□□□□□ -2.58
RPA1P27694 MIR8485-201ENST00000401372 91 ntBASIC-1.07□□□□□ -2.58
RPA1P27694 RNA5SP225-201ENST00000410874 135 ntBASIC-1.07□□□□□ -2.58
RPA1P27694 AC090616.4-201ENST00000448026 115 ntBASIC-1.07□□□□□ -2.58
RPA1P27694 HAR1A.1-201ENST00000459583 118 ntBASIC-1.07□□□□□ -2.58
RPA1P27694 RNU6-608P-201ENST00000383927 104 ntBASIC-1.08□□□□□ -2.58
RPA1P27694 Y_RNA.514-201ENST00000384528 112 ntBASIC-1.08□□□□□ -2.58
RPA1P27694 TRAJ9-201ENST00000390528 61 ntAPPRIS P1 BASIC-1.08□□□□□ -2.58
RPA1P27694 SNORA26.2-201ENST00000390922 122 ntBASIC-1.08□□□□□ -2.58
RPA1P27694 RNU6-1267P-201ENST00000410747 107 ntBASIC-1.08□□□□□ -2.58
RPA1P27694 RNY1P9-201ENST00000532431 109 ntBASIC-1.08□□□□□ -2.58
RPA1P27694 MIR3115-201ENST00000577915 68 ntBASIC-1.08□□□□□ -2.58
RPA1P27694 MIR4679-1-201ENST00000637619 75 ntBASIC-1.08□□□□□ -2.58
RPA1P27694 MIR29B1-201ENST00000385015 81 ntBASIC-1.09□□□□□ -2.58
RPA1P27694 RNU6-857P-201ENST00000515893 110 ntBASIC-1.09□□□□□ -2.58
RPA1P27694 MIR3165-201ENST00000579874 75 ntBASIC-1.09□□□□□ -2.58
RPA1P27694 U7.4-201ENST00000614961 63 ntBASIC-1.09□□□□□ -2.58
RPA1P27694 RNU6-411P-201ENST00000384451 107 ntBASIC-1.1□□□□□ -2.59
RPA1P27694 RNU6-258P-201ENST00000390884 101 ntBASIC-1.1□□□□□ -2.59
RPA1P27694 MIR4306-201ENST00000583390 91 ntBASIC-1.1□□□□□ -2.59
RPA1P27694 Y_RNA.43-201ENST00000362670 111 ntBASIC-1.11□□□□□ -2.59
RPA1P27694 MIR579-201ENST00000385221 98 ntBASIC-1.12□□□□□ -2.59
RPA1P27694 Y_RNA.583-201ENST00000391033 113 ntBASIC-1.12□□□□□ -2.59
RPA1P27694 MIR3170-201ENST00000582699 77 ntBASIC-1.12□□□□□ -2.59
RPA1P27694 ULK3-223ENST00000631115 126 ntTSL 5 BASIC-1.12□□□□□ -2.59
RPA1P27694 MIR6874-201ENST00000635894 71 ntBASIC-1.12□□□□□ -2.59
RPA1P27694 MIR409-201ENST00000362237 79 ntBASIC-1.13□□□□□ -2.59
RPA1P27694 RNU6-634P-201ENST00000459134 106 ntBASIC-1.13□□□□□ -2.59
RPA1P27694 MIR4490-201ENST00000582647 84 ntBASIC-1.13□□□□□ -2.59
RPA1P27694 RNU6-279P-201ENST00000391297 101 ntBASIC-1.14□□□□□ -2.59
RPA1P27694 AC091912.2-201ENST00000624798 167 ntBASIC-1.14□□□□□ -2.59
RPA1P27694 MIR3202-2-201ENST00000635980 79 ntBASIC-1.14□□□□□ -2.59
RPA1P27694 MIR4320-201ENST00000636981 65 ntBASIC-1.14□□□□□ -2.59
RPA1P27694 MTRNR2L9-201ENST00000622562 75 ntBASIC-1.15□□□□□ -2.59
RPA1P27694 Y_RNA.443-201ENST00000384135 111 ntBASIC-1.16□□□□□ -2.6
RPA1P27694 Y_RNA.545-201ENST00000384652 105 ntBASIC-1.16□□□□□ -2.6
RPA1P27694 RNU6-663P-201ENST00000391105 106 ntBASIC-1.16□□□□□ -2.6
RPA1P27694 RNU7-151P-201ENST00000516930 53 ntBASIC-1.16□□□□□ -2.6
RPA1P27694 SPRY4-IT1_2.1-201ENST00000612613 121 ntBASIC-1.16□□□□□ -2.6
RPA1P27694 Y_RNA.365-201ENST00000365537 102 ntBASIC-1.17□□□□□ -2.6
RPA1P27694 SNORD78.1-201ENST00000390866 65 ntBASIC-1.17□□□□□ -2.6
RPA1P27694 RNA5SP266-201ENST00000410273 108 ntBASIC-1.17□□□□□ -2.6
RPA1P27694 Y_RNA.603-201ENST00000410571 108 ntBASIC-1.17□□□□□ -2.6
RPA1P27694 RNU6-172P-201ENST00000411000 93 ntBASIC-1.17□□□□□ -2.6
RPA1P27694 RNU6-542P-201ENST00000516405 103 ntBASIC-1.17□□□□□ -2.6
RPA1P27694 MIR7978-201ENST00000636158 59 ntBASIC-1.17□□□□□ -2.6
RPA1P27694 MIR429-201ENST00000362106 83 ntBASIC-1.18□□□□□ -2.6
RPA1P27694 SNORD60.1-201ENST00000362451 73 ntBASIC-1.18□□□□□ -2.6
RPA1P27694 RNU6-974P-201ENST00000384099 108 ntBASIC-1.18□□□□□ -2.6
RPA1P27694 RNU6-706P-201ENST00000517229 104 ntBASIC-1.18□□□□□ -2.6
RPA1P27694 RNU6-164P-201ENST00000364604 103 ntBASIC-1.19□□□□□ -2.6
RPA1P27694 MIR548AA1-201ENST00000384971 97 ntBASIC-1.19□□□□□ -2.6
Retrieved 100 of 98,524 protein–RNA pairs in 267.5 ms