Protein–RNA interactions for Protein: P0CW19

LIMS3, LIM and senescent cell antigen-like-containing domain protein 3, humanhuman

Predictions only

Length 117 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS3P0CW19 SNORD113-2-201ENST00000391082 72 ntBASIC-3.03□□□□□ -2.89
LIMS3P0CW19 Y_RNA.218-201ENST00000364218 104 ntBASIC-3.04□□□□□ -2.9
LIMS3P0CW19 SNORD115-31-201ENST00000365318 82 ntBASIC-3.04□□□□□ -2.9
LIMS3P0CW19 Y_RNA.421-201ENST00000384052 101 ntBASIC-3.04□□□□□ -2.9
LIMS3P0CW19 SNORD19B.1-201ENST00000630615 80 ntBASIC-3.04□□□□□ -2.9
LIMS3P0CW19 RNU6-766P-201ENST00000362478 107 ntBASIC-3.05□□□□□ -2.9
LIMS3P0CW19 Y_RNA.257-201ENST00000364596 102 ntBASIC-3.05□□□□□ -2.9
LIMS3P0CW19 MIR630-201ENST00000384957 97 ntBASIC-3.05□□□□□ -2.9
LIMS3P0CW19 AC074348.1-201ENST00000426503 132 ntBASIC-3.05□□□□□ -2.9
LIMS3P0CW19 MIR4668-201ENST00000582284 70 ntBASIC-3.05□□□□□ -2.9
LIMS3P0CW19 RNA5SP173-201ENST00000364857 136 ntBASIC-3.06□□□□□ -2.9
LIMS3P0CW19 MT-TG-201ENST00000387429 68 ntBASIC-3.06□□□□□ -2.9
LIMS3P0CW19 RNU6-995P-201ENST00000391244 107 ntBASIC-3.06□□□□□ -2.9
LIMS3P0CW19 RNU6-686P-201ENST00000364839 107 ntBASIC-3.07□□□□□ -2.9
LIMS3P0CW19 Y_RNA.290-201ENST00000364879 114 ntBASIC-3.07□□□□□ -2.9
LIMS3P0CW19 snoU13.10-201ENST00000459301 103 ntBASIC-3.07□□□□□ -2.9
LIMS3P0CW19 RNU6-554P-201ENST00000410466 106 ntBASIC-3.09□□□□□ -2.9
LIMS3P0CW19 RNU6-668P-201ENST00000364180 107 ntBASIC-3.1□□□□□ -2.91
LIMS3P0CW19 RNU6-1325P-201ENST00000364905 105 ntBASIC-3.1□□□□□ -2.91
LIMS3P0CW19 RNU6-1306P-201ENST00000365219 99 ntBASIC-3.1□□□□□ -2.91
LIMS3P0CW19 RNY1P5-201ENST00000383890 115 ntBASIC-3.1□□□□□ -2.91
LIMS3P0CW19 RNU6-1081P-201ENST00000384537 107 ntBASIC-3.1□□□□□ -2.91
LIMS3P0CW19 RNU6-1011P-201ENST00000384668 107 ntBASIC-3.1□□□□□ -2.91
LIMS3P0CW19 hsa-mir-4773-1.1-201ENST00000585225 78 ntBASIC-3.1□□□□□ -2.91
LIMS3P0CW19 SNORA27.2-201ENST00000363365 126 ntBASIC-3.11□□□□□ -2.91
LIMS3P0CW19 SNORD116-14-201ENST00000383894 92 ntBASIC-3.11□□□□□ -2.91
LIMS3P0CW19 SNORD116-17-201ENST00000383929 92 ntBASIC-3.11□□□□□ -2.91
LIMS3P0CW19 RNU6-106P-201ENST00000384405 107 ntBASIC-3.11□□□□□ -2.91
LIMS3P0CW19 SNORD116-15-201ENST00000384445 92 ntBASIC-3.11□□□□□ -2.91
LIMS3P0CW19 SNORD116-19-201ENST00000384729 92 ntBASIC-3.11□□□□□ -2.91
LIMS3P0CW19 SNORA19-201ENST00000384737 128 ntBASIC-3.12□□□□□ -2.91
LIMS3P0CW19 SPRY4-IT1_2.1-201ENST00000612613 121 ntBASIC-3.12□□□□□ -2.91
LIMS3P0CW19 FTX_4.1-201ENST00000616291 147 ntBASIC-3.12□□□□□ -2.91
LIMS3P0CW19 RNU6-1094P-201ENST00000362416 104 ntBASIC-3.13□□□□□ -2.91
LIMS3P0CW19 SNORD1B-201ENST00000363091 84 ntBASIC-3.13□□□□□ -2.91
LIMS3P0CW19 Y_RNA.464-201ENST00000384282 110 ntBASIC-3.13□□□□□ -2.91
LIMS3P0CW19 Y_RNA.544-201ENST00000384650 113 ntBASIC-3.13□□□□□ -2.91
LIMS3P0CW19 RNU6-346P-201ENST00000516288 111 ntBASIC-3.13□□□□□ -2.91
LIMS3P0CW19 MIR8053-201ENST00000613344 75 ntBASIC-3.13□□□□□ -2.91
LIMS3P0CW19 Y_RNA.501-201ENST00000384467 103 ntBASIC-3.14□□□□□ -2.91
LIMS3P0CW19 RNU6-129P-201ENST00000391022 107 ntBASIC-3.14□□□□□ -2.91
LIMS3P0CW19 RNY4P18-201ENST00000391107 89 ntBASIC-3.14□□□□□ -2.91
LIMS3P0CW19 Y_RNA.620-201ENST00000411009 88 ntBASIC-3.14□□□□□ -2.91
LIMS3P0CW19 AC013734.1-201ENST00000619329 111 ntBASIC-3.14□□□□□ -2.91
LIMS3P0CW19 MIR1297-201ENST00000637311 77 ntBASIC-3.14□□□□□ -2.91
LIMS3P0CW19 MIRLET7A1-201ENST00000362295 80 ntBASIC-3.15□□□□□ -2.91
LIMS3P0CW19 RNU6-1212P-201ENST00000517023 104 ntBASIC-3.15□□□□□ -2.91
LIMS3P0CW19 MIR2052-201ENST00000636055 55 ntBASIC-3.15□□□□□ -2.91
LIMS3P0CW19 Y_RNA.204-201ENST00000364112 102 ntBASIC-3.16□□□□□ -2.92
LIMS3P0CW19 Y_RNA.506-201ENST00000384494 102 ntBASIC-3.16□□□□□ -2.92
LIMS3P0CW19 SNORD116-22-201ENST00000384430 92 ntBASIC-3.17□□□□□ -2.92
LIMS3P0CW19 TRAJ33-201ENST00000390504 57 ntAPPRIS P1 BASIC-3.17□□□□□ -2.92
LIMS3P0CW19 SNORA41B-201ENST00000384785 128 ntBASIC-3.18□□□□□ -2.92
LIMS3P0CW19 TRAJ53-201ENST00000390485 66 ntAPPRIS P1 BASIC-3.18□□□□□ -2.92
LIMS3P0CW19 SNORD63.2-201ENST00000516303 64 ntBASIC-3.18□□□□□ -2.92
LIMS3P0CW19 RNU7-151P-201ENST00000516930 53 ntBASIC-3.18□□□□□ -2.92
LIMS3P0CW19 MTRNR2L9-201ENST00000622562 75 ntBASIC-3.19□□□□□ -2.92
LIMS3P0CW19 Y_RNA.532-201ENST00000384590 113 ntBASIC-3.2□□□□□ -2.92
LIMS3P0CW19 RNU6-380P-201ENST00000410207 107 ntBASIC-3.2□□□□□ -2.92
LIMS3P0CW19 SCARNA15.1-201ENST00000516384 125 ntBASIC-3.2□□□□□ -2.92
LIMS3P0CW19 SNORD113.1-201ENST00000363280 73 ntBASIC-3.21□□□□□ -2.92
LIMS3P0CW19 RNU6-669P-201ENST00000365575 107 ntBASIC-3.21□□□□□ -2.92
LIMS3P0CW19 RNU6-907P-201ENST00000390924 102 ntBASIC-3.21□□□□□ -2.92
LIMS3P0CW19 AC097484.2-201ENST00000509147 251 ntBASIC-3.21□□□□□ -2.92
LIMS3P0CW19 RNU6-1191P-201ENST00000516799 107 ntBASIC-3.21□□□□□ -2.92
LIMS3P0CW19 AC005520.4-201ENST00000604337 90 ntBASIC-3.22□□□□□ -2.92
LIMS3P0CW19 U6.97-201ENST00000636904 101 ntBASIC-3.22□□□□□ -2.92
LIMS3P0CW19 RNU6-694P-201ENST00000364071 147 ntBASIC-3.23□□□□□ -2.93
LIMS3P0CW19 RNU6-402P-201ENST00000410678 103 ntBASIC-3.23□□□□□ -2.93
LIMS3P0CW19 MIR4484-201ENST00000582855 83 ntBASIC-3.23□□□□□ -2.93
LIMS3P0CW19 MIR548BB-201ENST00000626714 66 ntBASIC-3.23□□□□□ -2.93
LIMS3P0CW19 LEKR1-212ENST00000640869 237 ntTSL 5 BASIC-3.23□□□□□ -2.93
LIMS3P0CW19 RNY4P9-201ENST00000363194 97 ntBASIC-3.24□□□□□ -2.93
LIMS3P0CW19 RNU6-219P-201ENST00000364728 107 ntBASIC-3.24□□□□□ -2.93
LIMS3P0CW19 Y_RNA.321-201ENST00000365149 102 ntBASIC-3.24□□□□□ -2.93
LIMS3P0CW19 RNU6-497P-201ENST00000365316 104 ntBASIC-3.24□□□□□ -2.93
LIMS3P0CW19 RNY4-201ENST00000516507 96 ntBASIC-3.24□□□□□ -2.93
LIMS3P0CW19 RNU6-755P-201ENST00000364400 103 ntBASIC-3.25□□□□□ -2.93
LIMS3P0CW19 SNORA63.4-201ENST00000362763 126 ntBASIC-3.26□□□□□ -2.93
LIMS3P0CW19 RNU6-255P-201ENST00000516957 105 ntBASIC-3.26□□□□□ -2.93
LIMS3P0CW19 Y_RNA.219-201ENST00000364232 113 ntBASIC-3.27□□□□□ -2.93
LIMS3P0CW19 MIR579-201ENST00000385221 98 ntBASIC-3.27□□□□□ -2.93
LIMS3P0CW19 RNU6-172P-201ENST00000411000 93 ntBASIC-3.27□□□□□ -2.93
LIMS3P0CW19 MIR7978-201ENST00000636158 59 ntBASIC-3.27□□□□□ -2.93
LIMS3P0CW19 Y_RNA.647-201ENST00000459194 112 ntBASIC-3.28□□□□□ -2.93
LIMS3P0CW19 Y_RNA.640-201ENST00000459296 112 ntBASIC-3.28□□□□□ -2.93
LIMS3P0CW19 RNU6-523P-201ENST00000516304 54 ntBASIC-3.28□□□□□ -2.93
LIMS3P0CW19 Y_RNA.803-201ENST00000614432 112 ntBASIC-3.28□□□□□ -2.93
LIMS3P0CW19 Y_RNA.815-201ENST00000616655 112 ntBASIC-3.28□□□□□ -2.93
LIMS3P0CW19 Y_RNA.795-201ENST00000619475 112 ntBASIC-3.28□□□□□ -2.93
LIMS3P0CW19 Y_RNA.827-201ENST00000638104 112 ntBASIC-3.28□□□□□ -2.93
LIMS3P0CW19 SNORD18C-201ENST00000362704 69 ntBASIC-3.29□□□□□ -2.94
LIMS3P0CW19 SNORD45A-201ENST00000384512 84 ntBASIC-3.3□□□□□ -2.94
LIMS3P0CW19 MIR125B1-201ENST00000385236 88 ntBASIC-3.3□□□□□ -2.94
LIMS3P0CW19 Y_RNA.186-201ENST00000363899 92 ntBASIC-3.31□□□□□ -2.94
LIMS3P0CW19 Y_RNA.513-201ENST00000384522 100 ntBASIC-3.31□□□□□ -2.94
LIMS3P0CW19 Y_RNA.611-201ENST00000410682 108 ntBASIC-3.31□□□□□ -2.94
LIMS3P0CW19 RNY3P8-201ENST00000411366 126 ntBASIC-3.31□□□□□ -2.94
LIMS3P0CW19 RNU6-267P-201ENST00000516714 103 ntBASIC-3.31□□□□□ -2.94
LIMS3P0CW19 AL031386.1-201ENST00000411940 142 ntTSL 5 BASIC-3.32□□□□□ -2.94
Retrieved 100 of 98,524 protein–RNA pairs in 317.2 ms