Protein–RNA interactions for Protein: P09016

HOXD4, Homeobox protein Hox-D4, humanhuman

Predicted RBP Predictions only

Length 255 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXD4P09016 MIR889-201ENST00000401280 79 ntBASIC-0.61□□□□□ -2.51
HOXD4P09016 RNU6-634P-201ENST00000459134 106 ntBASIC-0.61□□□□□ -2.51
HOXD4P09016 SNORD114-17-201ENST00000364699 75 ntBASIC-0.62□□□□□ -2.51
HOXD4P09016 Y_RNA.375-201ENST00000365625 101 ntBASIC-0.62□□□□□ -2.51
HOXD4P09016 Y_RNA.613-201ENST00000410726 97 ntBASIC-0.62□□□□□ -2.51
HOXD4P09016 RNU6-523P-201ENST00000516304 54 ntBASIC-0.62□□□□□ -2.51
HOXD4P09016 Y_RNA.282-201ENST00000364793 102 ntBASIC-0.63□□□□□ -2.51
HOXD4P09016 RNU6-458P-201ENST00000384179 107 ntBASIC-0.63□□□□□ -2.51
HOXD4P09016 MIR527-201ENST00000385244 85 ntBASIC-0.63□□□□□ -2.51
HOXD4P09016 RNU7-88P-201ENST00000458752 63 ntBASIC-0.63□□□□□ -2.51
HOXD4P09016 U7.5-201ENST00000517224 61 ntBASIC-0.63□□□□□ -2.51
HOXD4P09016 RNY1P9-201ENST00000532431 109 ntBASIC-0.63□□□□□ -2.51
HOXD4P09016 U6.58-201ENST00000613107 107 ntBASIC-0.63□□□□□ -2.51
HOXD4P09016 Y_RNA.236-201ENST00000364427 111 ntBASIC-0.64□□□□□ -2.51
HOXD4P09016 SNORD113-2-201ENST00000391082 72 ntBASIC-0.64□□□□□ -2.51
HOXD4P09016 RNU6-1233P-201ENST00000362922 102 ntBASIC-0.65□□□□□ -2.51
HOXD4P09016 RNU6-540P-201ENST00000384622 101 ntBASIC-0.65□□□□□ -2.51
HOXD4P09016 RNA5SP266-201ENST00000410273 108 ntBASIC-0.66□□□□□ -2.52
HOXD4P09016 RNU6-732P-201ENST00000516033 103 ntBASIC-0.66□□□□□ -2.52
HOXD4P09016 RNU6-1238P-201ENST00000517215 102 ntBASIC-0.66□□□□□ -2.52
HOXD4P09016 AC020913.3-201ENST00000594678 125 ntTSL 3 BASIC-0.66□□□□□ -2.52
HOXD4P09016 Y_RNA.109-201ENST00000363215 102 ntBASIC-0.67□□□□□ -2.52
HOXD4P09016 TRAJ57-201ENST00000390482 63 ntAPPRIS P1 BASIC-0.67□□□□□ -2.52
HOXD4P09016 RNU6-663P-201ENST00000391105 106 ntBASIC-0.67□□□□□ -2.52
HOXD4P09016 SNORA26.4-201ENST00000391188 123 ntBASIC-0.67□□□□□ -2.52
HOXD4P09016 Y_RNA.685-201ENST00000516532 108 ntBASIC-0.67□□□□□ -2.52
HOXD4P09016 MIR429-201ENST00000362106 83 ntBASIC-0.68□□□□□ -2.52
HOXD4P09016 MIR196A1-201ENST00000388006 70 ntBASIC-0.68□□□□□ -2.52
HOXD4P09016 Y_RNA.443-201ENST00000384135 111 ntBASIC-0.69□□□□□ -2.52
HOXD4P09016 SCARNA17-201ENST00000516183 144 ntBASIC-0.69□□□□□ -2.52
HOXD4P09016 SNORA72.7-201ENST00000516349 94 ntBASIC-0.69□□□□□ -2.52
HOXD4P09016 RNU6-1174P-201ENST00000517278 101 ntBASIC-0.69□□□□□ -2.52
HOXD4P09016 SNORD115-33-201ENST00000363723 82 ntBASIC-0.7□□□□□ -2.52
HOXD4P09016 SNORD114-25-201ENST00000363742 72 ntBASIC-0.7□□□□□ -2.52
HOXD4P09016 RNU6-431P-201ENST00000383874 107 ntBASIC-0.7□□□□□ -2.52
HOXD4P09016 Y_RNA.457-201ENST00000384237 111 ntBASIC-0.7□□□□□ -2.52
HOXD4P09016 MIR147A-201ENST00000385079 72 ntBASIC-0.7□□□□□ -2.52
HOXD4P09016 RNU6-1275P-201ENST00000391087 107 ntBASIC-0.7□□□□□ -2.52
HOXD4P09016 SCARNA21.1-201ENST00000515996 128 ntBASIC-0.7□□□□□ -2.52
HOXD4P09016 RNU6-871P-201ENST00000516122 100 ntBASIC-0.7□□□□□ -2.52
HOXD4P09016 SNORD63.1-201ENST00000516178 80 ntBASIC-0.7□□□□□ -2.52
HOXD4P09016 RNU6-542P-201ENST00000516405 103 ntBASIC-0.7□□□□□ -2.52
HOXD4P09016 RNU6-776P-201ENST00000364403 104 ntBASIC-0.71□□□□□ -2.52
HOXD4P09016 RNU6-1022P-201ENST00000365049 104 ntBASIC-0.71□□□□□ -2.52
HOXD4P09016 SNORD116-16-201ENST00000384533 92 ntBASIC-0.71□□□□□ -2.52
HOXD4P09016 SNORA41B-201ENST00000384785 128 ntBASIC-0.71□□□□□ -2.52
HOXD4P09016 SNORD64-201ENST00000386683 67 ntBASIC-0.71□□□□□ -2.52
HOXD4P09016 RNU6-630P-201ENST00000391258 106 ntBASIC-0.71□□□□□ -2.52
HOXD4P09016 SNORD30.1-201ENST00000391309 70 ntBASIC-0.71□□□□□ -2.52
HOXD4P09016 SCARNA20.2-201ENST00000516052 116 ntBASIC-0.71□□□□□ -2.52
HOXD4P09016 Y_RNA.565-201ENST00000384719 101 ntBASIC-0.72□□□□□ -2.52
HOXD4P09016 RNU6-696P-201ENST00000390834 107 ntBASIC-0.72□□□□□ -2.52
HOXD4P09016 MIR4662A-201ENST00000637499 67 ntBASIC-0.72□□□□□ -2.52
HOXD4P09016 SNORD83B-201ENST00000386745 93 ntBASIC-0.73□□□□□ -2.53
HOXD4P09016 SNORD19-201ENST00000391191 68 ntBASIC-0.73□□□□□ -2.53
HOXD4P09016 AL353691.2-201ENST00000443795 59 ntBASIC-0.73□□□□□ -2.53
HOXD4P09016 RNU6-1262P-201ENST00000516217 96 ntBASIC-0.73□□□□□ -2.53
HOXD4P09016 RNU6-598P-201ENST00000364017 105 ntBASIC-0.74□□□□□ -2.53
HOXD4P09016 TRAJ9-201ENST00000390528 61 ntAPPRIS P1 BASIC-0.74□□□□□ -2.53
HOXD4P09016 SNORA25.4-201ENST00000363666 124 ntBASIC-0.75□□□□□ -2.53
HOXD4P09016 RNU6-649P-201ENST00000384463 107 ntBASIC-0.75□□□□□ -2.53
HOXD4P09016 Y_RNA.514-201ENST00000384528 112 ntBASIC-0.75□□□□□ -2.53
HOXD4P09016 MIR4324-201ENST00000584846 72 ntBASIC-0.75□□□□□ -2.53
HOXD4P09016 MIR6738-201ENST00000619620 64 ntBASIC-0.75□□□□□ -2.53
HOXD4P09016 U2.18-201ENST00000622185 84 ntBASIC-0.75□□□□□ -2.53
HOXD4P09016 SNX3P1X-201ENST00000414887 175 ntBASIC-0.76□□□□□ -2.53
HOXD4P09016 AP002795.1-201ENST00000534879 84 ntBASIC-0.76□□□□□ -2.53
HOXD4P09016 RNU6-92P-201ENST00000605893 104 ntBASIC-0.76□□□□□ -2.53
HOXD4P09016 U6.111-201ENST00000636093 83 ntBASIC-0.76□□□□□ -2.53
HOXD4P09016 MIR587-201ENST00000384845 96 ntBASIC-0.77□□□□□ -2.53
HOXD4P09016 MIR548Q-201ENST00000408404 100 ntBASIC-0.77□□□□□ -2.53
HOXD4P09016 AC005520.4-201ENST00000604337 90 ntBASIC-0.77□□□□□ -2.53
HOXD4P09016 SNORD1B-201ENST00000363091 84 ntBASIC-0.78□□□□□ -2.53
HOXD4P09016 RNU6-10P-201ENST00000384036 107 ntBASIC-0.78□□□□□ -2.53
HOXD4P09016 Y_RNA.583-201ENST00000391033 113 ntBASIC-0.78□□□□□ -2.53
HOXD4P09016 RNU6-539P-201ENST00000516665 103 ntBASIC-0.78□□□□□ -2.53
HOXD4P09016 MIR382-201ENST00000637119 76 ntBASIC-0.78□□□□□ -2.53
HOXD4P09016 AL500527.2-201ENST00000454105 95 ntBASIC-0.79□□□□□ -2.54
HOXD4P09016 MIR5683-201ENST00000636514 76 ntBASIC-0.79□□□□□ -2.54
HOXD4P09016 RNU6-1236P-201ENST00000517080 99 ntBASIC-0.8□□□□□ -2.54
HOXD4P09016 SNORD60.1-201ENST00000362451 73 ntBASIC-0.81□□□□□ -2.54
HOXD4P09016 snoU83B.1-201ENST00000517136 88 ntBASIC-0.81□□□□□ -2.54
HOXD4P09016 MIR507-201ENST00000385234 94 ntBASIC-0.82□□□□□ -2.54
HOXD4P09016 MIR4490-201ENST00000582647 84 ntBASIC-0.83□□□□□ -2.54
HOXD4P09016 MIR4511-201ENST00000582784 87 ntBASIC-0.83□□□□□ -2.54
HOXD4P09016 SNORA25.5-201ENST00000363782 126 ntBASIC-0.84□□□□□ -2.54
HOXD4P09016 MIR548AA1-201ENST00000384971 97 ntBASIC-0.84□□□□□ -2.54
HOXD4P09016 RNA5SP192-201ENST00000364404 120 ntBASIC-0.85□□□□□ -2.55
HOXD4P09016 RNU6-800P-201ENST00000384473 103 ntBASIC-0.85□□□□□ -2.55
HOXD4P09016 MIR1468-201ENST00000410600 86 ntBASIC-0.85□□□□□ -2.55
HOXD4P09016 RNU6-1267P-201ENST00000410747 107 ntBASIC-0.85□□□□□ -2.55
HOXD4P09016 RNU6-172P-201ENST00000411000 93 ntBASIC-0.85□□□□□ -2.55
HOXD4P09016 SPRY4-IT1_2.1-201ENST00000612613 121 ntBASIC-0.85□□□□□ -2.55
HOXD4P09016 MIR378F-201ENST00000578143 78 ntBASIC-0.86□□□□□ -2.55
HOXD4P09016 MIR3165-201ENST00000579874 75 ntBASIC-0.86□□□□□ -2.55
HOXD4P09016 uc_338.19-201ENST00000616808 99 ntBASIC-0.86□□□□□ -2.55
HOXD4P09016 AC103706.3-201ENST00000636297 85 ntBASIC-0.86□□□□□ -2.55
HOXD4P09016 RNA5SP26-201ENST00000362406 119 ntBASIC-0.87□□□□□ -2.55
HOXD4P09016 MIR520D-201ENST00000385002 87 ntBASIC-0.87□□□□□ -2.55
HOXD4P09016 RPL35AP4-201ENST00000412007 102 ntBASIC-0.87□□□□□ -2.55
Retrieved 100 of 98,524 protein–RNA pairs in 200.9 ms