Protein–RNA interactions for Protein: A6NC98

CCDC88B, Coiled-coil domain-containing protein 88B, humanhuman

Predictions only

Length 1,476 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88BA6NC98 Y_RNA.632-201ENST00000459189 102 ntBASIC-5.13□□□□□ -3.23
CCDC88BA6NC98 SNORD45C-201ENST00000383893 79 ntBASIC-5.14□□□□□ -3.23
CCDC88BA6NC98 RNU6-742P-201ENST00000365289 107 ntBASIC-5.15□□□□□ -3.23
CCDC88BA6NC98 RNU6-918P-201ENST00000391219 106 ntBASIC-5.15□□□□□ -3.23
CCDC88BA6NC98 DMD-AS3-201ENST00000439592 293 ntTSL 3 BASIC-5.15□□□□□ -3.23
CCDC88BA6NC98 RNU6-231P-201ENST00000517122 103 ntBASIC-5.15□□□□□ -3.23
CCDC88BA6NC98 MIR3688-2-201ENST00000636963 87 ntBASIC-5.15□□□□□ -3.23
CCDC88BA6NC98 RNU6-574P-201ENST00000384265 107 ntBASIC-5.16□□□□□ -3.24
CCDC88BA6NC98 RNU6-162P-201ENST00000516228 103 ntBASIC-5.16□□□□□ -3.24
CCDC88BA6NC98 RNU6-92P-201ENST00000605893 104 ntBASIC-5.16□□□□□ -3.24
CCDC88BA6NC98 RNU6-1325P-201ENST00000364905 105 ntBASIC-5.17□□□□□ -3.24
CCDC88BA6NC98 RNA5SP224-201ENST00000365069 126 ntBASIC-5.17□□□□□ -3.24
CCDC88BA6NC98 RNU6-402P-201ENST00000410678 103 ntBASIC-5.17□□□□□ -3.24
CCDC88BA6NC98 Y_RNA.58-201ENST00000362807 102 ntBASIC-5.18□□□□□ -3.24
CCDC88BA6NC98 Y_RNA.197-201ENST00000364004 102 ntBASIC-5.18□□□□□ -3.24
CCDC88BA6NC98 SNORA40B-201ENST00000385573 128 ntBASIC-5.18□□□□□ -3.24
CCDC88BA6NC98 RNU7-61P-201ENST00000515897 61 ntBASIC-5.18□□□□□ -3.24
CCDC88BA6NC98 MIR4484-201ENST00000582855 83 ntBASIC-5.18□□□□□ -3.24
CCDC88BA6NC98 SNORA63.4-201ENST00000362763 126 ntBASIC-5.19□□□□□ -3.24
CCDC88BA6NC98 AC093729.1-201ENST00000513074 128 ntBASIC-5.19□□□□□ -3.24
CCDC88BA6NC98 Y_RNA.206-201ENST00000364136 102 ntBASIC-5.2□□□□□ -3.24
CCDC88BA6NC98 RNU6-686P-201ENST00000364839 107 ntBASIC-5.2□□□□□ -3.24
CCDC88BA6NC98 AP001340.1-201ENST00000624405 217 ntBASIC-5.2□□□□□ -3.24
CCDC88BA6NC98 Y_RNA.260-201ENST00000364628 101 ntBASIC-5.2□□□□□ -3.24
CCDC88BA6NC98 RNU6-1227P-201ENST00000383981 107 ntBASIC-5.21□□□□□ -3.24
CCDC88BA6NC98 SNORD116-4-201ENST00000384733 96 ntBASIC-5.21□□□□□ -3.24
CCDC88BA6NC98 Y_RNA.586-201ENST00000391146 98 ntBASIC-5.21□□□□□ -3.24
CCDC88BA6NC98 RNU6-1211P-201ENST00000459179 105 ntBASIC-5.22□□□□□ -3.25
CCDC88BA6NC98 RNU6-1219P-201ENST00000516143 112 ntBASIC-5.22□□□□□ -3.25
CCDC88BA6NC98 RNU6-557P-201ENST00000516842 110 ntBASIC-5.23□□□□□ -3.25
CCDC88BA6NC98 RNU6-422P-201ENST00000384632 107 ntBASIC-5.24□□□□□ -3.25
CCDC88BA6NC98 TRAJ9-201ENST00000390528 61 ntAPPRIS P1 BASIC-5.24□□□□□ -3.25
CCDC88BA6NC98 MIR1297-201ENST00000637311 77 ntBASIC-5.24□□□□□ -3.25
CCDC88BA6NC98 Y_RNA.335-201ENST00000365299 96 ntBASIC-5.25□□□□□ -3.25
CCDC88BA6NC98 Y_RNA.516-201ENST00000384541 124 ntBASIC-5.25□□□□□ -3.25
CCDC88BA6NC98 TMSB4XP3-201ENST00000445144 114 ntBASIC-5.25□□□□□ -3.25
CCDC88BA6NC98 RNU6-988P-201ENST00000519081 107 ntBASIC-5.25□□□□□ -3.25
CCDC88BA6NC98 SOX2OT_exon4.1-201ENST00000610449 109 ntBASIC-5.25□□□□□ -3.25
CCDC88BA6NC98 RNU6-836P-201ENST00000362920 107 ntBASIC-5.26□□□□□ -3.25
CCDC88BA6NC98 RNU6-1241P-201ENST00000384536 107 ntBASIC-5.26□□□□□ -3.25
CCDC88BA6NC98 AC069439.1-201ENST00000494739 167 ntBASIC-5.26□□□□□ -3.25
CCDC88BA6NC98 SNORD60.1-201ENST00000362451 73 ntBASIC-5.27□□□□□ -3.25
CCDC88BA6NC98 Y_RNA.219-201ENST00000364232 113 ntBASIC-5.27□□□□□ -3.25
CCDC88BA6NC98 RNU6-196P-201ENST00000384315 107 ntBASIC-5.27□□□□□ -3.25
CCDC88BA6NC98 RNU6-542P-201ENST00000516405 103 ntBASIC-5.28□□□□□ -3.25
CCDC88BA6NC98 U7.3-201ENST00000616123 62 ntBASIC-5.28□□□□□ -3.25
CCDC88BA6NC98 RNU6-633P-201ENST00000362612 103 ntBASIC-5.29□□□□□ -3.26
CCDC88BA6NC98 SNORD115.2-201ENST00000391126 59 ntBASIC-5.29□□□□□ -3.26
CCDC88BA6NC98 RNU2-16P-201ENST00000410712 136 ntBASIC-5.29□□□□□ -3.26
CCDC88BA6NC98 RNU6-277P-201ENST00000516272 106 ntBASIC-5.29□□□□□ -3.26
CCDC88BA6NC98 RNU6-659P-201ENST00000516454 104 ntBASIC-5.29□□□□□ -3.26
CCDC88BA6NC98 MIRLET7A1-201ENST00000362295 80 ntBASIC-5.31□□□□□ -3.26
CCDC88BA6NC98 Y_RNA.532-201ENST00000384590 113 ntBASIC-5.31□□□□□ -3.26
CCDC88BA6NC98 Y_RNA.202-201ENST00000364083 110 ntBASIC-5.32□□□□□ -3.26
CCDC88BA6NC98 RNU6-904P-201ENST00000516206 101 ntBASIC-5.32□□□□□ -3.26
CCDC88BA6NC98 U7.2-201ENST00000607576 63 ntBASIC-5.32□□□□□ -3.26
CCDC88BA6NC98 MIR664A-201ENST00000626086 82 ntBASIC-5.32□□□□□ -3.26
CCDC88BA6NC98 Y_RNA.218-201ENST00000364218 104 ntBASIC-5.32□□□□□ -3.26
CCDC88BA6NC98 SNORD19B-201ENST00000459623 84 ntBASIC-5.32□□□□□ -3.26
CCDC88BA6NC98 MIR548AI-201ENST00000579940 88 ntBASIC-5.32□□□□□ -3.26
CCDC88BA6NC98 U6.104-201ENST00000637979 90 ntBASIC-5.32□□□□□ -3.26
CCDC88BA6NC98 AC113195.1-201ENST00000579952 141 ntBASIC-5.33□□□□□ -3.26
CCDC88BA6NC98 MIR1302-1-201ENST00000637932 143 ntBASIC-5.34□□□□□ -3.26
CCDC88BA6NC98 Y_RNA.160-201ENST00000363677 92 ntBASIC-5.35□□□□□ -3.27
CCDC88BA6NC98 RNU6-788P-201ENST00000390967 104 ntBASIC-5.35□□□□□ -3.27
CCDC88BA6NC98 MIR1277-201ENST00000408536 78 ntBASIC-5.35□□□□□ -3.27
CCDC88BA6NC98 AL157777.2-201ENST00000258070 137 ntBASIC-5.36□□□□□ -3.27
CCDC88BA6NC98 SNORA40.16-201ENST00000517238 121 ntBASIC-5.36□□□□□ -3.27
CCDC88BA6NC98 RNU6-895P-201ENST00000384125 103 ntBASIC-5.38□□□□□ -3.27
CCDC88BA6NC98 Y_RNA.459-201ENST00000384251 102 ntBASIC-5.38□□□□□ -3.27
CCDC88BA6NC98 Y_RNA.579-201ENST00000390939 94 ntBASIC-5.38□□□□□ -3.27
CCDC88BA6NC98 RNU6-380P-201ENST00000410207 107 ntBASIC-5.38□□□□□ -3.27
CCDC88BA6NC98 SNORD116-24-201ENST00000384549 92 ntBASIC-5.39□□□□□ -3.27
CCDC88BA6NC98 RNU6-713P-201ENST00000384761 107 ntBASIC-5.39□□□□□ -3.27
CCDC88BA6NC98 RNU6-718P-201ENST00000516166 105 ntBASIC-5.39□□□□□ -3.27
CCDC88BA6NC98 AC022559.1-201ENST00000520905 205 ntBASIC-5.4□□□□□ -3.27
CCDC88BA6NC98 MIR4317-201ENST00000637586 65 ntBASIC-5.4□□□□□ -3.27
CCDC88BA6NC98 RNU7-119P-201ENST00000459279 63 ntBASIC-5.42□□□□□ -3.28
CCDC88BA6NC98 RNU6-1020P-201ENST00000363684 107 ntBASIC-5.43□□□□□ -3.28
CCDC88BA6NC98 RNU4-85P-201ENST00000364675 123 ntBASIC-5.43□□□□□ -3.28
CCDC88BA6NC98 MIR363-201ENST00000384840 75 ntBASIC-5.43□□□□□ -3.28
CCDC88BA6NC98 RNA5SP449-201ENST00000516871 130 ntBASIC-5.43□□□□□ -3.28
CCDC88BA6NC98 SNORA33.2-201ENST00000365413 134 ntBASIC-5.44□□□□□ -3.28
CCDC88BA6NC98 RNU6-419P-201ENST00000517030 63 ntBASIC-5.45□□□□□ -3.28
CCDC88BA6NC98 MIR4668-201ENST00000582284 70 ntBASIC-5.45□□□□□ -3.28
CCDC88BA6NC98 U4.5-201ENST00000617137 123 ntBASIC-5.45□□□□□ -3.28
CCDC88BA6NC98 AC141273.2-201ENST00000618989 130 ntBASIC-5.45□□□□□ -3.28
CCDC88BA6NC98 Y_RNA.544-201ENST00000384650 113 ntBASIC-5.46□□□□□ -3.28
CCDC88BA6NC98 MTATP8P2-201ENST00000435212 202 ntBASIC-5.46□□□□□ -3.28
CCDC88BA6NC98 RNU6-772P-201ENST00000516042 105 ntBASIC-5.46□□□□□ -3.28
CCDC88BA6NC98 SNORA81.3-201ENST00000517283 198 ntBASIC-5.46□□□□□ -3.28
CCDC88BA6NC98 MIR154-201ENST00000385243 84 ntBASIC-5.47□□□□□ -3.29
CCDC88BA6NC98 Y_RNA.107-201ENST00000363190 121 ntBASIC-5.48□□□□□ -3.29
CCDC88BA6NC98 MIR590-201ENST00000385008 97 ntBASIC-5.49□□□□□ -3.29
CCDC88BA6NC98 Y_RNA.70-201ENST00000362886 110 ntBASIC-5.5□□□□□ -3.29
CCDC88BA6NC98 Y_RNA.272-201ENST00000364696 102 ntBASIC-5.5□□□□□ -3.29
CCDC88BA6NC98 RNU6-1135P-201ENST00000411083 103 ntBASIC-5.5□□□□□ -3.29
CCDC88BA6NC98 RNU6-267P-201ENST00000516714 103 ntBASIC-5.5□□□□□ -3.29
CCDC88BA6NC98 AC139792.2-201ENST00000624218 587 ntBASIC-5.5□□□□□ -3.29
CCDC88BA6NC98 RNU6-1134P-201ENST00000365156 101 ntBASIC-5.51□□□□□ -3.29
Retrieved 100 of 98,524 protein–RNA pairs in 212 ms