Protein–RNA interactions for Protein: Q9UPT8

ZC3H4, Zinc finger CCCH domain-containing protein 4, humanhuman

Known RBP Predictions only

Length 1,303 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ZC3H4Q9UPT8 snoU13.19-201ENST00000459148 104 ntBASIC0.72□□□□□ -2.29
ZC3H4Q9UPT8 RNU6-231P-201ENST00000517122 103 ntBASIC0.72□□□□□ -2.29
ZC3H4Q9UPT8 MIR7978-201ENST00000636158 59 ntBASIC0.72□□□□□ -2.29
ZC3H4Q9UPT8 MIR429-201ENST00000362106 83 ntBASIC0.71□□□□□ -2.3
ZC3H4Q9UPT8 RNU6-127P-201ENST00000390897 107 ntBASIC0.71□□□□□ -2.3
ZC3H4Q9UPT8 AC108740.1-201ENST00000498629 225 ntBASIC0.71□□□□□ -2.3
ZC3H4Q9UPT8 Y_RNA.722-201ENST00000517279 114 ntBASIC0.71□□□□□ -2.3
ZC3H4Q9UPT8 MIR548AG1-201ENST00000579932 66 ntBASIC0.71□□□□□ -2.3
ZC3H4Q9UPT8 MIR4514-201ENST00000581410 57 ntBASIC0.71□□□□□ -2.3
ZC3H4Q9UPT8 CEP290-203ENST00000547691 5968 ntTSL 1 (best) BASIC0.71□□□□□ -2.3
ZC3H4Q9UPT8 RNA5SP98-201ENST00000363158 137 ntBASIC0.7□□□□□ -2.3
ZC3H4Q9UPT8 RNU6-936P-201ENST00000384005 107 ntBASIC0.7□□□□□ -2.3
ZC3H4Q9UPT8 SNORA62.5-201ENST00000516634 120 ntBASIC0.7□□□□□ -2.3
ZC3H4Q9UPT8 MIR4636-201ENST00000582271 80 ntBASIC0.7□□□□□ -2.3
ZC3H4Q9UPT8 AC023932.2-201ENST00000603176 175 ntBASIC0.7□□□□□ -2.3
ZC3H4Q9UPT8 MIRLET7D-201ENST00000362263 87 ntBASIC0.69□□□□□ -2.3
ZC3H4Q9UPT8 RNU6-815P-201ENST00000384080 113 ntBASIC0.69□□□□□ -2.3
ZC3H4Q9UPT8 RNA5SP63-201ENST00000391225 112 ntBASIC0.69□□□□□ -2.3
ZC3H4Q9UPT8 AL353803.5-201ENST00000599815 141 ntBASIC0.69□□□□□ -2.3
ZC3H4Q9UPT8 RNU6-246P-201ENST00000384702 107 ntBASIC0.68□□□□□ -2.3
ZC3H4Q9UPT8 uc_338.17-201ENST00000619633 179 ntBASIC0.68□□□□□ -2.3
ZC3H4Q9UPT8 HOTAIRM1_3.1-201ENST00000619974 59 ntBASIC0.68□□□□□ -2.3
ZC3H4Q9UPT8 uc_338.36-201ENST00000622331 158 ntBASIC0.66□□□□□ -2.3
ZC3H4Q9UPT8 Y_RNA.109-201ENST00000363215 102 ntBASIC0.65□□□□□ -2.3
ZC3H4Q9UPT8 RNU6-458P-201ENST00000384179 107 ntBASIC0.65□□□□□ -2.3
ZC3H4Q9UPT8 MIR106A-201ENST00000384870 81 ntBASIC0.65□□□□□ -2.3
ZC3H4Q9UPT8 U6.58-201ENST00000613107 107 ntBASIC0.65□□□□□ -2.3
ZC3H4Q9UPT8 MIR7110-201ENST00000612638 86 ntBASIC0.64□□□□□ -2.31
ZC3H4Q9UPT8 MIR6514-201ENST00000622549 70 ntBASIC0.64□□□□□ -2.31
ZC3H4Q9UPT8 MIR329-2-201ENST00000385029 84 ntBASIC0.64□□□□□ -2.31
ZC3H4Q9UPT8 MIR6759-201ENST00000638110 65 ntBASIC0.64□□□□□ -2.31
ZC3H4Q9UPT8 RNU6-1133P-201ENST00000410963 100 ntBASIC0.63□□□□□ -2.31
ZC3H4Q9UPT8 SNORD1B-201ENST00000363091 84 ntBASIC0.62□□□□□ -2.31
ZC3H4Q9UPT8 SNORA50A-201ENST00000384225 134 ntBASIC0.62□□□□□ -2.31
ZC3H4Q9UPT8 RNU6-808P-201ENST00000391233 108 ntBASIC0.62□□□□□ -2.31
ZC3H4Q9UPT8 RNU6-172P-201ENST00000411000 93 ntBASIC0.62□□□□□ -2.31
ZC3H4Q9UPT8 Z95118.1-201ENST00000421372 247 ntBASIC0.62□□□□□ -2.31
ZC3H4Q9UPT8 MIR4432-201ENST00000581823 84 ntBASIC0.62□□□□□ -2.31
ZC3H4Q9UPT8 MIR4802-201ENST00000581881 80 ntBASIC0.62□□□□□ -2.31
ZC3H4Q9UPT8 RNA5SP163-201ENST00000410304 99 ntBASIC0.61□□□□□ -2.31
ZC3H4Q9UPT8 RNA5SP25-201ENST00000410815 110 ntBASIC0.61□□□□□ -2.31
ZC3H4Q9UPT8 AC114737.2-201ENST00000421583 173 ntBASIC0.61□□□□□ -2.31
ZC3H4Q9UPT8 MIR92A1-201ENST00000385233 78 ntBASIC0.6□□□□□ -2.31
ZC3H4Q9UPT8 AC069113.3-201ENST00000521019 150 ntBASIC0.6□□□□□ -2.31
ZC3H4Q9UPT8 AC090625.1-201ENST00000357130 210 ntBASIC0.59□□□□□ -2.32
ZC3H4Q9UPT8 RNA5SP368-201ENST00000364298 116 ntBASIC0.59□□□□□ -2.32
ZC3H4Q9UPT8 SNORD115-23-201ENST00000364461 82 ntBASIC0.59□□□□□ -2.32
ZC3H4Q9UPT8 RNU6ATAC22P-201ENST00000516794 89 ntBASIC0.59□□□□□ -2.32
ZC3H4Q9UPT8 MIR5589-201ENST00000579442 60 ntBASIC0.59□□□□□ -2.32
ZC3H4Q9UPT8 RNA5SP266-201ENST00000410273 108 ntBASIC0.57□□□□□ -2.32
ZC3H4Q9UPT8 RNA5SP67-201ENST00000516422 131 ntBASIC0.57□□□□□ -2.32
ZC3H4Q9UPT8 AC108676.2-201ENST00000605225 163 ntBASIC0.57□□□□□ -2.32
ZC3H4Q9UPT8 RNU6-810P-201ENST00000364001 107 ntBASIC0.56□□□□□ -2.32
ZC3H4Q9UPT8 SNORD114-15-201ENST00000364687 72 ntBASIC0.56□□□□□ -2.32
ZC3H4Q9UPT8 MIR1468-201ENST00000410600 86 ntBASIC0.56□□□□□ -2.32
ZC3H4Q9UPT8 IGLVI-20-201ENST00000519296 130 ntBASIC0.56□□□□□ -2.32
ZC3H4Q9UPT8 MIR4723-201ENST00000585070 81 ntBASIC0.56□□□□□ -2.32
ZC3H4Q9UPT8 AL391099.1-201ENST00000624635 187 ntBASIC0.56□□□□□ -2.32
ZC3H4Q9UPT8 RNU6-1184P-201ENST00000384588 108 ntBASIC0.55□□□□□ -2.32
ZC3H4Q9UPT8 MIR409-201ENST00000362237 79 ntBASIC0.54□□□□□ -2.32
ZC3H4Q9UPT8 SNORA40.16-201ENST00000517238 121 ntBASIC0.54□□□□□ -2.32
ZC3H4Q9UPT8 RNU6-455P-201ENST00000384681 107 ntBASIC0.52□□□□□ -2.33
ZC3H4Q9UPT8 MIR593-201ENST00000384856 100 ntBASIC0.52□□□□□ -2.33
ZC3H4Q9UPT8 CR383656.4-201ENST00000546909 122 ntBASIC0.52□□□□□ -2.33
ZC3H4Q9UPT8 Y_RNA.185-201ENST00000363894 100 ntBASIC0.51□□□□□ -2.33
ZC3H4Q9UPT8 Y_RNA.457-201ENST00000384237 111 ntBASIC0.51□□□□□ -2.33
ZC3H4Q9UPT8 MIR579-201ENST00000385221 98 ntBASIC0.51□□□□□ -2.33
ZC3H4Q9UPT8 SNORA40B-201ENST00000385573 128 ntBASIC0.51□□□□□ -2.33
ZC3H4Q9UPT8 U2.18-201ENST00000622185 84 ntBASIC0.51□□□□□ -2.33
ZC3H4Q9UPT8 RNU6-1327P-201ENST00000365302 105 ntBASIC0.5□□□□□ -2.33
ZC3H4Q9UPT8 RNU6ATAC11P-201ENST00000408541 125 ntBASIC0.5□□□□□ -2.33
ZC3H4Q9UPT8 MIR610-201ENST00000385139 96 ntBASIC0.49□□□□□ -2.33
ZC3H4Q9UPT8 RNU7-88P-201ENST00000458752 63 ntBASIC0.49□□□□□ -2.33
ZC3H4Q9UPT8 RNU6-758P-201ENST00000516292 89 ntBASIC0.48□□□□□ -2.33
ZC3H4Q9UPT8 RNU6-598P-201ENST00000364017 105 ntBASIC0.47□□□□□ -2.33
ZC3H4Q9UPT8 RNU6-973P-201ENST00000364690 107 ntBASIC0.47□□□□□ -2.33
ZC3H4Q9UPT8 RNU6-901P-201ENST00000384593 106 ntBASIC0.47□□□□□ -2.33
ZC3H4Q9UPT8 MIR892B-201ENST00000401279 77 ntBASIC0.47□□□□□ -2.33
ZC3H4Q9UPT8 RNA5SP134-201ENST00000516492 96 ntBASIC0.47□□□□□ -2.33
ZC3H4Q9UPT8 SPRY4-IT1_2.1-201ENST00000612613 121 ntBASIC0.47□□□□□ -2.33
ZC3H4Q9UPT8 MIR6718-201ENST00000616153 80 ntBASIC0.47□□□□□ -2.33
ZC3H4Q9UPT8 SNORA62.4-201ENST00000365504 151 ntBASIC0.46□□□□□ -2.34
ZC3H4Q9UPT8 RNU6-900P-201ENST00000384498 102 ntBASIC0.46□□□□□ -2.34
ZC3H4Q9UPT8 RNU7-55P-201ENST00000459426 62 ntBASIC0.46□□□□□ -2.34
ZC3H4Q9UPT8 MIR148A-201ENST00000362215 68 ntBASIC0.45□□□□□ -2.34
ZC3H4Q9UPT8 Y_RNA.379-201ENST00000365653 102 ntBASIC0.45□□□□□ -2.34
ZC3H4Q9UPT8 AC104408.1-201ENST00000605241 170 ntBASIC0.45□□□□□ -2.34
ZC3H4Q9UPT8 MIR4315-1-201ENST00000636800 73 ntBASIC0.45□□□□□ -2.34
ZC3H4Q9UPT8 MIR4315-2-201ENST00000640925 73 ntBASIC0.45□□□□□ -2.34
ZC3H4Q9UPT8 MIR548H2-201ENST00000408874 88 ntBASIC0.44□□□□□ -2.34
ZC3H4Q9UPT8 SNORD57-201ENST00000448188 72 ntBASIC0.44□□□□□ -2.34
ZC3H4Q9UPT8 Y_RNA.698-201ENST00000516798 118 ntBASIC0.44□□□□□ -2.34
ZC3H4Q9UPT8 MIR6888-201ENST00000621977 67 ntBASIC0.44□□□□□ -2.34
ZC3H4Q9UPT8 RNU6-180P-201ENST00000516697 61 ntBASIC0.43□□□□□ -2.34
ZC3H4Q9UPT8 U7.5-201ENST00000517224 61 ntBASIC0.43□□□□□ -2.34
ZC3H4Q9UPT8 MIR5704-201ENST00000584029 77 ntBASIC0.43□□□□□ -2.34
ZC3H4Q9UPT8 TRGJP-201ENST00000390338 61 ntAPPRIS P1 BASIC0.42□□□□□ -2.34
ZC3H4Q9UPT8 RNU6-995P-201ENST00000391244 107 ntBASIC0.42□□□□□ -2.34
ZC3H4Q9UPT8 MIR6507-201ENST00000613630 70 ntBASIC0.42□□□□□ -2.34
ZC3H4Q9UPT8 RNU7-159P-201ENST00000459284 62 ntBASIC0.41□□□□□ -2.34
Retrieved 100 of 98,524 protein–RNA pairs in 194.5 ms