Protein–RNA interactions for Protein: Q8N2C3

DEPDC4, DEP domain-containing protein 4, humanhuman

Predictions only

Length 294 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
DEPDC4Q8N2C3 RNU6-829P-201ENST00000363700 112 ntBASIC0.42□□□□□ -2.34
DEPDC4Q8N2C3 RNU6-35P-201ENST00000384530 107 ntBASIC0.42□□□□□ -2.34
DEPDC4Q8N2C3 SNORA41B-201ENST00000384785 128 ntBASIC0.42□□□□□ -2.34
DEPDC4Q8N2C3 MIR610-201ENST00000385139 96 ntBASIC0.42□□□□□ -2.34
DEPDC4Q8N2C3 SNORA62.5-201ENST00000516634 120 ntBASIC0.42□□□□□ -2.34
DEPDC4Q8N2C3 MIR6514-201ENST00000622549 70 ntBASIC0.42□□□□□ -2.34
DEPDC4Q8N2C3 SNORA42.1-201ENST00000363515 137 ntBASIC0.41□□□□□ -2.34
DEPDC4Q8N2C3 SNORD115-23-201ENST00000364461 82 ntBASIC0.41□□□□□ -2.34
DEPDC4Q8N2C3 Y_RNA.282-201ENST00000364793 102 ntBASIC0.41□□□□□ -2.34
DEPDC4Q8N2C3 RNU6-614P-201ENST00000384369 107 ntBASIC0.41□□□□□ -2.34
DEPDC4Q8N2C3 SNORD116-16-201ENST00000384533 92 ntBASIC0.41□□□□□ -2.34
DEPDC4Q8N2C3 HAR1A.1-201ENST00000459583 118 ntBASIC0.41□□□□□ -2.34
DEPDC4Q8N2C3 RNA5SP134-201ENST00000516492 96 ntBASIC0.41□□□□□ -2.34
DEPDC4Q8N2C3 U6.59-201ENST00000615686 107 ntBASIC0.41□□□□□ -2.34
DEPDC4Q8N2C3 AL353803.5-201ENST00000599815 141 ntBASIC0.4□□□□□ -2.35
DEPDC4Q8N2C3 CEP290-203ENST00000547691 5968 ntTSL 1 (best) BASIC0.39□□□□□ -2.35
DEPDC4Q8N2C3 RNA5SP63-201ENST00000391225 112 ntBASIC0.39□□□□□ -2.35
DEPDC4Q8N2C3 RNA5SP163-201ENST00000410304 99 ntBASIC0.39□□□□□ -2.35
DEPDC4Q8N2C3 RNU7-119P-201ENST00000459279 63 ntBASIC0.38□□□□□ -2.35
DEPDC4Q8N2C3 AC023932.2-201ENST00000603176 175 ntBASIC0.38□□□□□ -2.35
DEPDC4Q8N2C3 RNU6-520P-201ENST00000384717 104 ntBASIC0.37□□□□□ -2.35
DEPDC4Q8N2C3 RNU6-1133P-201ENST00000410963 100 ntBASIC0.37□□□□□ -2.35
DEPDC4Q8N2C3 RNA5SP285-201ENST00000516619 119 ntBASIC0.37□□□□□ -2.35
DEPDC4Q8N2C3 MIR4514-201ENST00000581410 57 ntBASIC0.37□□□□□ -2.35
DEPDC4Q8N2C3 MIR4432-201ENST00000581823 84 ntBASIC0.37□□□□□ -2.35
DEPDC4Q8N2C3 RNU7-55P-201ENST00000459426 62 ntBASIC0.36□□□□□ -2.35
DEPDC4Q8N2C3 RNU6-900P-201ENST00000384498 102 ntBASIC0.35□□□□□ -2.35
DEPDC4Q8N2C3 RNU6-246P-201ENST00000384702 107 ntBASIC0.35□□□□□ -2.35
DEPDC4Q8N2C3 RNU6-987P-201ENST00000384759 104 ntBASIC0.35□□□□□ -2.35
DEPDC4Q8N2C3 Y_RNA.236-201ENST00000364427 111 ntBASIC0.34□□□□□ -2.36
DEPDC4Q8N2C3 RNU4-37P-201ENST00000410214 84 ntBASIC0.33□□□□□ -2.36
DEPDC4Q8N2C3 AC104408.1-201ENST00000605241 170 ntBASIC0.33□□□□□ -2.36
DEPDC4Q8N2C3 AL391099.1-201ENST00000624635 187 ntBASIC0.33□□□□□ -2.36
DEPDC4Q8N2C3 MIR6086-201ENST00000638065 55 ntBASIC0.33□□□□□ -2.36
DEPDC4Q8N2C3 RNU6-446P-201ENST00000362827 106 ntBASIC0.32□□□□□ -2.36
DEPDC4Q8N2C3 SNORA62.4-201ENST00000365504 151 ntBASIC0.32□□□□□ -2.36
DEPDC4Q8N2C3 MIR593-201ENST00000384856 100 ntBASIC0.32□□□□□ -2.36
DEPDC4Q8N2C3 RNU7-165P-201ENST00000458864 60 ntBASIC0.32□□□□□ -2.36
DEPDC4Q8N2C3 RNA5SP214-201ENST00000363378 118 ntBASIC0.31□□□□□ -2.36
DEPDC4Q8N2C3 RNU6-973P-201ENST00000364690 107 ntBASIC0.31□□□□□ -2.36
DEPDC4Q8N2C3 RNU6-458P-201ENST00000384179 107 ntBASIC0.31□□□□□ -2.36
DEPDC4Q8N2C3 RNU6-455P-201ENST00000384681 107 ntBASIC0.31□□□□□ -2.36
DEPDC4Q8N2C3 RNU6ATAC4P-201ENST00000387446 126 ntBASIC0.31□□□□□ -2.36
DEPDC4Q8N2C3 RNU6-231P-201ENST00000517122 103 ntBASIC0.31□□□□□ -2.36
DEPDC4Q8N2C3 MIR548AG1-201ENST00000579932 66 ntBASIC0.31□□□□□ -2.36
DEPDC4Q8N2C3 U6.58-201ENST00000613107 107 ntBASIC0.31□□□□□ -2.36
DEPDC4Q8N2C3 MIR6507-201ENST00000613630 70 ntBASIC0.3□□□□□ -2.36
DEPDC4Q8N2C3 uc_338.36-201ENST00000622331 158 ntBASIC0.3□□□□□ -2.36
DEPDC4Q8N2C3 Y_RNA.109-201ENST00000363215 102 ntBASIC0.29□□□□□ -2.36
DEPDC4Q8N2C3 MIR145-201ENST00000384967 88 ntBASIC0.29□□□□□ -2.36
DEPDC4Q8N2C3 RNU7-159P-201ENST00000459284 62 ntBASIC0.29□□□□□ -2.36
DEPDC4Q8N2C3 AC108676.2-201ENST00000605225 163 ntBASIC0.29□□□□□ -2.36
DEPDC4Q8N2C3 MIR7110-201ENST00000612638 86 ntBASIC0.28□□□□□ -2.36
DEPDC4Q8N2C3 SNORD114-9-201ENST00000364370 72 ntBASIC0.27□□□□□ -2.37
DEPDC4Q8N2C3 MIR329-2-201ENST00000385029 84 ntBASIC0.27□□□□□ -2.37
DEPDC4Q8N2C3 MIR6759-201ENST00000638110 65 ntBASIC0.27□□□□□ -2.37
DEPDC4Q8N2C3 RNU6-1184P-201ENST00000384588 108 ntBASIC0.26□□□□□ -2.37
DEPDC4Q8N2C3 SNORD116.2-201ENST00000391251 93 ntBASIC0.25□□□□□ -2.37
DEPDC4Q8N2C3 RNU6-901P-201ENST00000384593 106 ntBASIC0.24□□□□□ -2.37
DEPDC4Q8N2C3 AC096531.1-201ENST00000419107 107 ntBASIC0.24□□□□□ -2.37
DEPDC4Q8N2C3 MIR6718-201ENST00000616153 80 ntBASIC0.24□□□□□ -2.37
DEPDC4Q8N2C3 RNU6-172P-201ENST00000411000 93 ntBASIC0.23□□□□□ -2.37
DEPDC4Q8N2C3 MIR5093-201ENST00000583199 100 ntBASIC0.23□□□□□ -2.37
DEPDC4Q8N2C3 SNORD1B-201ENST00000363091 84 ntBASIC0.22□□□□□ -2.37
DEPDC4Q8N2C3 RNU6-46P-201ENST00000383860 107 ntBASIC0.22□□□□□ -2.37
DEPDC4Q8N2C3 RNU6-141P-201ENST00000410499 105 ntBASIC0.22□□□□□ -2.37
DEPDC4Q8N2C3 HOTAIR_3.1-201ENST00000611352 97 ntBASIC0.21□□□□□ -2.38
DEPDC4Q8N2C3 RNU6-1312P-201ENST00000362425 108 ntBASIC0.19□□□□□ -2.38
DEPDC4Q8N2C3 SNORD114-5-201ENST00000362928 70 ntBASIC0.19□□□□□ -2.38
DEPDC4Q8N2C3 SNORD113-4-201ENST00000364802 75 ntBASIC0.19□□□□□ -2.38
DEPDC4Q8N2C3 MIR1295A-201ENST00000408463 79 ntBASIC0.19□□□□□ -2.38
DEPDC4Q8N2C3 AC244250.2-201ENST00000418731 148 ntBASIC0.19□□□□□ -2.38
DEPDC4Q8N2C3 Y_RNA.698-201ENST00000516798 118 ntBASIC0.19□□□□□ -2.38
DEPDC4Q8N2C3 MIR5190-201ENST00000581537 80 ntBASIC0.19□□□□□ -2.38
DEPDC4Q8N2C3 MIR4636-201ENST00000582271 80 ntBASIC0.19□□□□□ -2.38
DEPDC4Q8N2C3 AL445584.3-201ENST00000617173 78 ntBASIC0.19□□□□□ -2.38
DEPDC4Q8N2C3 MIR6888-201ENST00000621977 67 ntBASIC0.19□□□□□ -2.38
DEPDC4Q8N2C3 RNU6ATAC11P-201ENST00000408541 125 ntBASIC0.18□□□□□ -2.38
DEPDC4Q8N2C3 AC104692.1-201ENST00000472406 90 ntBASIC0.18□□□□□ -2.38
DEPDC4Q8N2C3 Y_RNA.722-201ENST00000517279 114 ntBASIC0.18□□□□□ -2.38
DEPDC4Q8N2C3 MIR4464-201ENST00000580818 92 ntBASIC0.18□□□□□ -2.38
DEPDC4Q8N2C3 Clostridiales-1.4-201ENST00000636807 150 ntBASIC0.18□□□□□ -2.38
DEPDC4Q8N2C3 RNU6-924P-201ENST00000362926 108 ntBASIC0.17□□□□□ -2.38
DEPDC4Q8N2C3 MIR6854-201ENST00000614935 69 ntBASIC0.17□□□□□ -2.38
DEPDC4Q8N2C3 RNU6-598P-201ENST00000364017 105 ntBASIC0.16□□□□□ -2.38
DEPDC4Q8N2C3 SNORA40B-201ENST00000385573 128 ntBASIC0.16□□□□□ -2.38
DEPDC4Q8N2C3 RNU6-696P-201ENST00000390834 107 ntBASIC0.16□□□□□ -2.38
DEPDC4Q8N2C3 RNU6-808P-201ENST00000391233 108 ntBASIC0.16□□□□□ -2.38
DEPDC4Q8N2C3 MIR5704-201ENST00000584029 77 ntBASIC0.15□□□□□ -2.39
DEPDC4Q8N2C3 MIR4768-201ENST00000585270 74 ntBASIC0.15□□□□□ -2.39
DEPDC4Q8N2C3 MIR655-201ENST00000362159 97 ntBASIC0.14□□□□□ -2.39
DEPDC4Q8N2C3 RNU6-810P-201ENST00000364001 107 ntBASIC0.14□□□□□ -2.39
DEPDC4Q8N2C3 SNORA40.16-201ENST00000517238 121 ntBASIC0.14□□□□□ -2.39
DEPDC4Q8N2C3 MIR5589-201ENST00000579442 60 ntBASIC0.14□□□□□ -2.39
DEPDC4Q8N2C3 MIR4290-201ENST00000583807 95 ntBASIC0.14□□□□□ -2.39
DEPDC4Q8N2C3 AL627230.5-201ENST00000619807 58 ntBASIC0.14□□□□□ -2.39
DEPDC4Q8N2C3 MIR371B-201ENST00000638082 66 ntBASIC0.14□□□□□ -2.39
DEPDC4Q8N2C3 SNORD56B-201ENST00000384713 71 ntBASIC0.13□□□□□ -2.39
DEPDC4Q8N2C3 RNU6-1262P-201ENST00000516217 96 ntBASIC0.13□□□□□ -2.39
DEPDC4Q8N2C3 U7.5-201ENST00000517224 61 ntBASIC0.13□□□□□ -2.39
Retrieved 100 of 98,524 protein–RNA pairs in 252.9 ms