Protein–RNA interactions for Protein: Q4G0X9

CCDC40, Coiled-coil domain-containing protein 40, humanhuman

Predictions only

Length 1,142 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC40Q4G0X9 MIR3675-201ENST00000583661 73 ntBASIC-1.74□□□□□ -2.69
CCDC40Q4G0X9 MIR5683-201ENST00000636514 76 ntBASIC-1.74□□□□□ -2.69
CCDC40Q4G0X9 SNORD116-22-201ENST00000384430 92 ntBASIC-1.75□□□□□ -2.69
CCDC40Q4G0X9 MIR527-201ENST00000385244 85 ntBASIC-1.75□□□□□ -2.69
CCDC40Q4G0X9 MIR1285-2-201ENST00000408311 88 ntBASIC-1.75□□□□□ -2.69
CCDC40Q4G0X9 MIR1468-201ENST00000410600 86 ntBASIC-1.75□□□□□ -2.69
CCDC40Q4G0X9 Y_RNA.620-201ENST00000411009 88 ntBASIC-1.75□□□□□ -2.69
CCDC40Q4G0X9 RNU7-88P-201ENST00000458752 63 ntBASIC-1.75□□□□□ -2.69
CCDC40Q4G0X9 RNU6-303P-201ENST00000517091 106 ntBASIC-1.75□□□□□ -2.69
CCDC40Q4G0X9 SNORD19-201ENST00000391191 68 ntBASIC-1.76□□□□□ -2.69
CCDC40Q4G0X9 Y_RNA.442-201ENST00000384131 102 ntBASIC-1.77□□□□□ -2.69
CCDC40Q4G0X9 MIR548C-201ENST00000384815 97 ntBASIC-1.77□□□□□ -2.69
CCDC40Q4G0X9 MIR889-201ENST00000401280 79 ntBASIC-1.77□□□□□ -2.69
CCDC40Q4G0X9 RNU2-51P-201ENST00000410708 197 ntBASIC-1.77□□□□□ -2.69
CCDC40Q4G0X9 AL031737.1-201ENST00000450125 223 ntBASIC-1.77□□□□□ -2.69
CCDC40Q4G0X9 Y_RNA.709-201ENST00000516952 92 ntBASIC-1.77□□□□□ -2.69
CCDC40Q4G0X9 RNU6-1174P-201ENST00000517278 101 ntBASIC-1.77□□□□□ -2.69
CCDC40Q4G0X9 RNU6-1168P-201ENST00000390831 104 ntBASIC-1.78□□□□□ -2.69
CCDC40Q4G0X9 TMSB4XP3-201ENST00000445144 114 ntBASIC-1.78□□□□□ -2.69
CCDC40Q4G0X9 RNU6-164P-201ENST00000364604 103 ntBASIC-1.79□□□□□ -2.7
CCDC40Q4G0X9 Y_RNA.74-201ENST00000362911 99 ntBASIC-1.8□□□□□ -2.7
CCDC40Q4G0X9 RNU6-686P-201ENST00000364839 107 ntBASIC-1.8□□□□□ -2.7
CCDC40Q4G0X9 AP002795.1-201ENST00000534879 84 ntBASIC-1.8□□□□□ -2.7
CCDC40Q4G0X9 MIR3668-201ENST00000582138 75 ntBASIC-1.8□□□□□ -2.7
CCDC40Q4G0X9 MIR365A-201ENST00000362260 87 ntBASIC-1.81□□□□□ -2.7
CCDC40Q4G0X9 RNU7-174P-201ENST00000516248 59 ntBASIC-1.81□□□□□ -2.7
CCDC40Q4G0X9 MIR3671-201ENST00000580455 88 ntBASIC-1.81□□□□□ -2.7
CCDC40Q4G0X9 MIR4520-1-201ENST00000582609 70 ntBASIC-1.81□□□□□ -2.7
CCDC40Q4G0X9 RNU6-497P-201ENST00000365316 104 ntBASIC-1.82□□□□□ -2.7
CCDC40Q4G0X9 RNU6-22P-201ENST00000384355 107 ntBASIC-1.82□□□□□ -2.7
CCDC40Q4G0X9 RNU6-1117P-201ENST00000384525 104 ntBASIC-1.82□□□□□ -2.7
CCDC40Q4G0X9 AC074348.1-201ENST00000426503 132 ntBASIC-1.82□□□□□ -2.7
CCDC40Q4G0X9 SNORA40.13-201ENST00000516379 120 ntBASIC-1.82□□□□□ -2.7
CCDC40Q4G0X9 MIR4441-201ENST00000582623 100 ntBASIC-1.82□□□□□ -2.7
CCDC40Q4G0X9 MIR429-201ENST00000362106 83 ntBASIC-1.83□□□□□ -2.7
CCDC40Q4G0X9 RNU6-330P-201ENST00000363015 107 ntBASIC-1.83□□□□□ -2.7
CCDC40Q4G0X9 Y_RNA.236-201ENST00000364427 111 ntBASIC-1.83□□□□□ -2.7
CCDC40Q4G0X9 RNU6-219P-201ENST00000364728 107 ntBASIC-1.83□□□□□ -2.7
CCDC40Q4G0X9 RNU6-540P-201ENST00000384622 101 ntBASIC-1.83□□□□□ -2.7
CCDC40Q4G0X9 RNU6-1089P-201ENST00000516473 104 ntBASIC-1.83□□□□□ -2.7
CCDC40Q4G0X9 MIR4770-201ENST00000579149 58 ntBASIC-1.83□□□□□ -2.7
CCDC40Q4G0X9 AP001318.4-201ENST00000616637 121 ntBASIC-1.83□□□□□ -2.7
CCDC40Q4G0X9 RNU6-478P-201ENST00000363904 110 ntBASIC-1.84□□□□□ -2.7
CCDC40Q4G0X9 RNU6-458P-201ENST00000384179 107 ntBASIC-1.84□□□□□ -2.7
CCDC40Q4G0X9 U6.58-201ENST00000613107 107 ntBASIC-1.84□□□□□ -2.7
CCDC40Q4G0X9 MALAT1.1-201ENST00000618249 95 ntBASIC-1.84□□□□□ -2.7
CCDC40Q4G0X9 SNORA8.1-201ENST00000384250 140 ntBASIC-1.85□□□□□ -2.71
CCDC40Q4G0X9 MIR548Q-201ENST00000408404 100 ntBASIC-1.85□□□□□ -2.71
CCDC40Q4G0X9 RNU6-402P-201ENST00000410678 103 ntBASIC-1.85□□□□□ -2.71
CCDC40Q4G0X9 MIR548BB-201ENST00000626714 66 ntBASIC-1.85□□□□□ -2.71
CCDC40Q4G0X9 RNU6-1325P-201ENST00000364905 105 ntBASIC-1.86□□□□□ -2.71
CCDC40Q4G0X9 RNU6-696P-201ENST00000390834 107 ntBASIC-1.86□□□□□ -2.71
CCDC40Q4G0X9 AL078595.1-201ENST00000404458 226 ntBASIC-1.86□□□□□ -2.71
CCDC40Q4G0X9 MIR450A1-201ENST00000362262 91 ntBASIC-1.87□□□□□ -2.71
CCDC40Q4G0X9 MIRLET7A1-201ENST00000362295 80 ntBASIC-1.87□□□□□ -2.71
CCDC40Q4G0X9 SNORD45.1-201ENST00000363181 77 ntBASIC-1.87□□□□□ -2.71
CCDC40Q4G0X9 Y_RNA.232-201ENST00000364369 96 ntBASIC-1.87□□□□□ -2.71
CCDC40Q4G0X9 RNU6-587P-201ENST00000391282 106 ntBASIC-1.87□□□□□ -2.71
CCDC40Q4G0X9 Y_RNA.282-201ENST00000364793 102 ntBASIC-1.88□□□□□ -2.71
CCDC40Q4G0X9 RNU6-604P-201ENST00000390917 100 ntBASIC-1.88□□□□□ -2.71
CCDC40Q4G0X9 RNU6-1154P-201ENST00000391001 104 ntBASIC-1.88□□□□□ -2.71
CCDC40Q4G0X9 RNU6-129P-201ENST00000391022 107 ntBASIC-1.88□□□□□ -2.71
CCDC40Q4G0X9 AC091912.2-201ENST00000624798 167 ntBASIC-1.88□□□□□ -2.71
CCDC40Q4G0X9 MIR1297-201ENST00000637311 77 ntBASIC-1.88□□□□□ -2.71
CCDC40Q4G0X9 RNU6-698P-201ENST00000363523 107 ntBASIC-1.89□□□□□ -2.71
CCDC40Q4G0X9 Y_RNA.273-201ENST00000364703 102 ntBASIC-1.89□□□□□ -2.71
CCDC40Q4G0X9 RNU6-34P-201ENST00000364874 107 ntBASIC-1.89□□□□□ -2.71
CCDC40Q4G0X9 AC090616.4-201ENST00000448026 115 ntBASIC-1.89□□□□□ -2.71
CCDC40Q4G0X9 RNU6-313P-201ENST00000516317 112 ntBASIC-1.89□□□□□ -2.71
CCDC40Q4G0X9 RNU6-267P-201ENST00000516714 103 ntBASIC-1.89□□□□□ -2.71
CCDC40Q4G0X9 Y_RNA.325-201ENST00000365171 122 ntBASIC-1.9□□□□□ -2.71
CCDC40Q4G0X9 RNU6-982P-201ENST00000516216 102 ntBASIC-1.9□□□□□ -2.71
CCDC40Q4G0X9 MIR6502-201ENST00000617296 76 ntBASIC-1.9□□□□□ -2.71
CCDC40Q4G0X9 MIR548M-201ENST00000408260 86 ntBASIC-1.91□□□□□ -2.72
CCDC40Q4G0X9 RNU6-380P-201ENST00000410207 107 ntBASIC-1.91□□□□□ -2.72
CCDC40Q4G0X9 Y_RNA.413-201ENST00000384007 102 ntBASIC-1.92□□□□□ -2.72
CCDC40Q4G0X9 RNY4P18-201ENST00000391107 89 ntBASIC-1.92□□□□□ -2.72
CCDC40Q4G0X9 RPL35AP4-201ENST00000412007 102 ntBASIC-1.92□□□□□ -2.72
CCDC40Q4G0X9 Y_RNA.754-201ENST00000476024 102 ntBASIC-1.92□□□□□ -2.72
CCDC40Q4G0X9 RNU6-1262P-201ENST00000516217 96 ntBASIC-1.92□□□□□ -2.72
CCDC40Q4G0X9 Y_RNA.790-201ENST00000614282 102 ntBASIC-1.92□□□□□ -2.72
CCDC40Q4G0X9 Y_RNA.782-201ENST00000614695 102 ntBASIC-1.92□□□□□ -2.72
CCDC40Q4G0X9 Y_RNA.109-201ENST00000363215 102 ntBASIC-1.93□□□□□ -2.72
CCDC40Q4G0X9 Y_RNA.611-201ENST00000410682 108 ntBASIC-1.93□□□□□ -2.72
CCDC40Q4G0X9 MTND4LP1-201ENST00000446263 157 ntBASIC-1.93□□□□□ -2.72
CCDC40Q4G0X9 MIR6874-201ENST00000635894 71 ntBASIC-1.93□□□□□ -2.72
CCDC40Q4G0X9 Y_RNA.616-201ENST00000410835 95 ntBASIC-1.94□□□□□ -2.72
CCDC40Q4G0X9 Y_RNA.426-201ENST00000384068 113 ntBASIC-1.95□□□□□ -2.72
CCDC40Q4G0X9 RNU6-1152P-201ENST00000384576 107 ntBASIC-1.95□□□□□ -2.72
CCDC40Q4G0X9 Y_RNA.543-201ENST00000384649 107 ntBASIC-1.95□□□□□ -2.72
CCDC40Q4G0X9 RNU6-168P-201ENST00000516189 101 ntBASIC-1.95□□□□□ -2.72
CCDC40Q4G0X9 U4.2-201ENST00000618561 85 ntBASIC-1.95□□□□□ -2.72
CCDC40Q4G0X9 RNA5SP215-201ENST00000363440 122 ntBASIC-1.96□□□□□ -2.72
CCDC40Q4G0X9 RNU6-755P-201ENST00000364400 103 ntBASIC-1.96□□□□□ -2.72
CCDC40Q4G0X9 Y_RNA.532-201ENST00000384590 113 ntBASIC-1.96□□□□□ -2.72
CCDC40Q4G0X9 AC018880.2-201ENST00000414265 201 ntBASIC-1.96□□□□□ -2.72
CCDC40Q4G0X9 RNU6-983P-201ENST00000516004 103 ntBASIC-1.96□□□□□ -2.72
CCDC40Q4G0X9 MIR548V-201ENST00000584165 80 ntBASIC-1.96□□□□□ -2.72
CCDC40Q4G0X9 MIR8053-201ENST00000613344 75 ntBASIC-1.96□□□□□ -2.72
CCDC40Q4G0X9 U4.4-201ENST00000620626 117 ntBASIC-1.96□□□□□ -2.72
Retrieved 100 of 98,524 protein–RNA pairs in 14.9 ms