Protein–RNA interactions for Protein: Q06945

SOX4, Transcription factor SOX-4, humanhuman

Predicted RBP Predictions only

Length 474 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SOX4Q06945 AL353803.5-201ENST00000599815 141 ntBASIC0.56□□□□□ -2.32
SOX4Q06945 uc_338.17-201ENST00000619633 179 ntBASIC0.56□□□□□ -2.32
SOX4Q06945 ZNF518A-209ENST00000614149 7911 ntAPPRIS P1 TSL 5 BASIC0.56□□□□□ -2.32
SOX4Q06945 MIR330-201ENST00000362196 94 ntBASIC0.55□□□□□ -2.32
SOX4Q06945 Y_RNA.109-201ENST00000363215 102 ntBASIC0.55□□□□□ -2.32
SOX4Q06945 RNU6ATAC4P-201ENST00000387446 126 ntBASIC0.55□□□□□ -2.32
SOX4Q06945 RNA5SP98-201ENST00000363158 137 ntBASIC0.54□□□□□ -2.32
SOX4Q06945 SNORD115-23-201ENST00000364461 82 ntBASIC0.54□□□□□ -2.32
SOX4Q06945 VTRNA1-3-201ENST00000365645 89 ntBASIC0.54□□□□□ -2.32
SOX4Q06945 RNU6-808P-201ENST00000391233 108 ntBASIC0.54□□□□□ -2.32
SOX4Q06945 SNORD116.2-201ENST00000391251 93 ntBASIC0.54□□□□□ -2.32
SOX4Q06945 AC108740.1-201ENST00000498629 225 ntBASIC0.54□□□□□ -2.32
SOX4Q06945 MIR7110-201ENST00000612638 86 ntBASIC0.54□□□□□ -2.32
SOX4Q06945 MIR429-201ENST00000362106 83 ntBASIC0.53□□□□□ -2.32
SOX4Q06945 RNU6-458P-201ENST00000384179 107 ntBASIC0.52□□□□□ -2.33
SOX4Q06945 MIR643-201ENST00000385267 97 ntBASIC0.52□□□□□ -2.33
SOX4Q06945 MIR1197-201ENST00000408818 88 ntBASIC0.52□□□□□ -2.33
SOX4Q06945 U6.58-201ENST00000613107 107 ntBASIC0.52□□□□□ -2.33
SOX4Q06945 snoR1.1-201ENST00000628177 80 ntBASIC0.52□□□□□ -2.33
SOX4Q06945 RNA5SP331-201ENST00000364986 107 ntBASIC0.51□□□□□ -2.33
SOX4Q06945 RNU6-1184P-201ENST00000384588 108 ntBASIC0.51□□□□□ -2.33
SOX4Q06945 AC069113.3-201ENST00000521019 150 ntBASIC0.51□□□□□ -2.33
SOX4Q06945 SNORD1B-201ENST00000363091 84 ntBASIC0.5□□□□□ -2.33
SOX4Q06945 MIR4432-201ENST00000581823 84 ntBASIC0.49□□□□□ -2.33
SOX4Q06945 MIR6514-201ENST00000622549 70 ntBASIC0.49□□□□□ -2.33
SOX4Q06945 RNU6-172P-201ENST00000411000 93 ntBASIC0.48□□□□□ -2.33
SOX4Q06945 AC114737.2-201ENST00000421583 173 ntBASIC0.48□□□□□ -2.33
SOX4Q06945 RNA5SP67-201ENST00000516422 131 ntBASIC0.48□□□□□ -2.33
SOX4Q06945 SNORA40.16-201ENST00000517238 121 ntBASIC0.48□□□□□ -2.33
SOX4Q06945 SNORA62.5-201ENST00000516634 120 ntBASIC0.47□□□□□ -2.33
SOX4Q06945 uc_338.36-201ENST00000622331 158 ntBASIC0.47□□□□□ -2.33
SOX4Q06945 AC090625.1-201ENST00000357130 210 ntBASIC0.46□□□□□ -2.34
SOX4Q06945 RNU6ATAC22P-201ENST00000516794 89 ntBASIC0.46□□□□□ -2.34
SOX4Q06945 AC108676.2-201ENST00000605225 163 ntBASIC0.46□□□□□ -2.34
SOX4Q06945 RNU6-810P-201ENST00000364001 107 ntBASIC0.45□□□□□ -2.34
SOX4Q06945 RNU7-55P-201ENST00000459426 62 ntBASIC0.45□□□□□ -2.34
SOX4Q06945 CR383656.4-201ENST00000546909 122 ntBASIC0.45□□□□□ -2.34
SOX4Q06945 MIR4636-201ENST00000582271 80 ntBASIC0.45□□□□□ -2.34
SOX4Q06945 MIR4723-201ENST00000585070 81 ntBASIC0.45□□□□□ -2.34
SOX4Q06945 AL391099.1-201ENST00000624635 187 ntBASIC0.45□□□□□ -2.34
SOX4Q06945 CEP290-203ENST00000547691 5968 ntTSL 1 (best) BASIC0.45□□□□□ -2.34
SOX4Q06945 MIR548H2-201ENST00000408874 88 ntBASIC0.44□□□□□ -2.34
SOX4Q06945 RNA5SP163-201ENST00000410304 99 ntBASIC0.44□□□□□ -2.34
SOX4Q06945 RNU6-1133P-201ENST00000410963 100 ntBASIC0.44□□□□□ -2.34
SOX4Q06945 MIR5087-201ENST00000635826 76 ntBASIC0.44□□□□□ -2.34
SOX4Q06945 SAMD9-203ENST00000620985 6754 ntAPPRIS P1 TSL 2 BASIC0.43□□□□□ -2.34
SOX4Q06945 KIF20B-201ENST00000260753 6306 ntAPPRIS P3 TSL 1 (best) BASIC0.43□□□□□ -2.34
SOX4Q06945 RNU6-598P-201ENST00000364017 105 ntBASIC0.43□□□□□ -2.34
SOX4Q06945 RNU6-1327P-201ENST00000365302 105 ntBASIC0.43□□□□□ -2.34
SOX4Q06945 SNORA40B-201ENST00000385573 128 ntBASIC0.43□□□□□ -2.34
SOX4Q06945 RNU6-180P-201ENST00000516697 61 ntBASIC0.43□□□□□ -2.34
SOX4Q06945 Y_RNA.698-201ENST00000516798 118 ntBASIC0.43□□□□□ -2.34
SOX4Q06945 RNU6-900P-201ENST00000384498 102 ntBASIC0.42□□□□□ -2.34
SOX4Q06945 MIR329-2-201ENST00000385029 84 ntBASIC0.42□□□□□ -2.34
SOX4Q06945 MIR5589-201ENST00000579442 60 ntBASIC0.42□□□□□ -2.34
SOX4Q06945 RNU6-973P-201ENST00000364690 107 ntBASIC0.41□□□□□ -2.34
SOX4Q06945 RNU6-455P-201ENST00000384681 107 ntBASIC0.41□□□□□ -2.34
SOX4Q06945 Z95118.1-201ENST00000421372 247 ntBASIC0.41□□□□□ -2.34
SOX4Q06945 SNORD57-201ENST00000448188 72 ntBASIC0.41□□□□□ -2.34
SOX4Q06945 SNORA62.4-201ENST00000365504 151 ntBASIC0.4□□□□□ -2.35
SOX4Q06945 RNA5SP63-201ENST00000391225 112 ntBASIC0.4□□□□□ -2.35
SOX4Q06945 MIR892B-201ENST00000401279 77 ntBASIC0.4□□□□□ -2.35
SOX4Q06945 MIR4464-201ENST00000580818 92 ntBASIC0.4□□□□□ -2.35
SOX4Q06945 MIR6507-201ENST00000613630 70 ntBASIC0.4□□□□□ -2.35
SOX4Q06945 MIR6888-201ENST00000621977 67 ntBASIC0.4□□□□□ -2.35
SOX4Q06945 U2.18-201ENST00000622185 84 ntBASIC0.4□□□□□ -2.35
SOX4Q06945 MIR4315-1-201ENST00000636800 73 ntBASIC0.4□□□□□ -2.35
SOX4Q06945 MIR4315-2-201ENST00000640925 73 ntBASIC0.4□□□□□ -2.35
SOX4Q06945 Y_RNA.185-201ENST00000363894 100 ntBASIC0.39□□□□□ -2.35
SOX4Q06945 SNORD114-15-201ENST00000364687 72 ntBASIC0.39□□□□□ -2.35
SOX4Q06945 TRGJP-201ENST00000390338 61 ntAPPRIS P1 BASIC0.39□□□□□ -2.35
SOX4Q06945 RNA5SP266-201ENST00000410273 108 ntBASIC0.39□□□□□ -2.35
SOX4Q06945 MIR1468-201ENST00000410600 86 ntBASIC0.39□□□□□ -2.35
SOX4Q06945 MIR6759-201ENST00000638110 65 ntBASIC0.39□□□□□ -2.35
SOX4Q06945 MIR148A-201ENST00000362215 68 ntBASIC0.38□□□□□ -2.35
SOX4Q06945 RNA5SP368-201ENST00000364298 116 ntBASIC0.38□□□□□ -2.35
SOX4Q06945 Y_RNA.457-201ENST00000384237 111 ntBASIC0.38□□□□□ -2.35
SOX4Q06945 AL445584.3-201ENST00000617173 78 ntBASIC0.38□□□□□ -2.35
SOX4Q06945 Y_RNA.379-201ENST00000365653 102 ntBASIC0.37□□□□□ -2.35
SOX4Q06945 MIR593-201ENST00000384856 100 ntBASIC0.37□□□□□ -2.35
SOX4Q06945 MIR610-201ENST00000385139 96 ntBASIC0.37□□□□□ -2.35
SOX4Q06945 MIR579-201ENST00000385221 98 ntBASIC0.37□□□□□ -2.35
SOX4Q06945 RNA5SP25-201ENST00000410815 110 ntBASIC0.37□□□□□ -2.35
SOX4Q06945 AC096531.1-201ENST00000419107 107 ntBASIC0.37□□□□□ -2.35
SOX4Q06945 RNU6-1262P-201ENST00000516217 96 ntBASIC0.37□□□□□ -2.35
SOX4Q06945 RNU6-980P-201ENST00000516925 103 ntBASIC0.37□□□□□ -2.35
SOX4Q06945 MIR4490-201ENST00000582647 84 ntBASIC0.37□□□□□ -2.35
SOX4Q06945 MIR2909-201ENST00000617113 69 ntBASIC0.37□□□□□ -2.35
SOX4Q06945 MIR409-201ENST00000362237 79 ntBASIC0.36□□□□□ -2.35
SOX4Q06945 SNORA50A-201ENST00000384225 134 ntBASIC0.36□□□□□ -2.35
SOX4Q06945 RNU6-758P-201ENST00000516292 89 ntBASIC0.36□□□□□ -2.35
SOX4Q06945 SPRY4-IT1_2.1-201ENST00000612613 121 ntBASIC0.36□□□□□ -2.35
SOX4Q06945 RNU6-696P-201ENST00000390834 107 ntBASIC0.35□□□□□ -2.35
SOX4Q06945 RNU6ATAC11P-201ENST00000408541 125 ntBASIC0.35□□□□□ -2.35
SOX4Q06945 RNU7-151P-201ENST00000516930 53 ntBASIC0.35□□□□□ -2.35
SOX4Q06945 U7.5-201ENST00000517224 61 ntBASIC0.35□□□□□ -2.35
SOX4Q06945 RNU6-753P-201ENST00000363926 107 ntBASIC0.34□□□□□ -2.36
SOX4Q06945 RNU7-88P-201ENST00000458752 63 ntBASIC0.34□□□□□ -2.36
SOX4Q06945 IGLVI-20-201ENST00000519296 130 ntBASIC0.34□□□□□ -2.36
SOX4Q06945 MIR548X-201ENST00000580069 75 ntBASIC0.34□□□□□ -2.36
Retrieved 100 of 98,524 protein–RNA pairs in 13.7 ms