Protein–RNA interactions for Protein: P39880

CUX1, Homeobox protein cut-like 1, humanhuman

Predictions only

Length 1,505 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1P39880 SNORD116-29-201ENST00000384516 83 ntBASIC-3.83□□□□□ -3.02
CUX1P39880 Y_RNA.645-201ENST00000391229 102 ntBASIC-3.84□□□□□ -3.02
CUX1P39880 MIR4777-201ENST00000583710 86 ntBASIC-3.84□□□□□ -3.02
CUX1P39880 RNU6-854P-201ENST00000364036 107 ntBASIC-3.85□□□□□ -3.03
CUX1P39880 RNU6-1124P-201ENST00000384169 107 ntBASIC-3.85□□□□□ -3.03
CUX1P39880 Y_RNA.387-201ENST00000383918 102 ntBASIC-3.85□□□□□ -3.03
CUX1P39880 RNU7-160P-201ENST00000516660 62 ntBASIC-3.85□□□□□ -3.03
CUX1P39880 RNU6-1296P-201ENST00000383879 107 ntBASIC-3.86□□□□□ -3.03
CUX1P39880 SNORD37.2-201ENST00000391075 66 ntBASIC-3.86□□□□□ -3.03
CUX1P39880 RNU6-639P-201ENST00000384074 107 ntBASIC-3.87□□□□□ -3.03
CUX1P39880 Y_RNA.554-201ENST00000384672 102 ntBASIC-3.87□□□□□ -3.03
CUX1P39880 MIR1302-6-201ENST00000408466 90 ntBASIC-3.87□□□□□ -3.03
CUX1P39880 RNU7-152P-201ENST00000458982 64 ntBASIC-3.87□□□□□ -3.03
CUX1P39880 MIR4643-201ENST00000577473 78 ntBASIC-3.87□□□□□ -3.03
CUX1P39880 MIR3658-201ENST00000636291 56 ntBASIC-3.87□□□□□ -3.03
CUX1P39880 RNU6-755P-201ENST00000364400 103 ntBASIC-3.88□□□□□ -3.03
CUX1P39880 RNU6-972P-201ENST00000391208 107 ntBASIC-3.88□□□□□ -3.03
CUX1P39880 MTND5P22-201ENST00000458380 195 ntBASIC-3.88□□□□□ -3.03
CUX1P39880 RNU7-153P-201ENST00000516455 62 ntBASIC-3.88□□□□□ -3.03
CUX1P39880 Y_RNA.680-201ENST00000516441 93 ntBASIC-3.89□□□□□ -3.03
CUX1P39880 U2.14-201ENST00000615943 113 ntBASIC-3.9□□□□□ -3.03
CUX1P39880 AC090971.5-201ENST00000621102 293 ntBASIC-3.9□□□□□ -3.03
CUX1P39880 MIR4679-2-201ENST00000578358 77 ntBASIC-3.91□□□□□ -3.04
CUX1P39880 DNAJC19P2-201ENST00000593340 302 ntBASIC-3.91□□□□□ -3.04
CUX1P39880 MIR548AH-201ENST00000637109 76 ntBASIC-3.91□□□□□ -3.04
CUX1P39880 SNORD45.1-201ENST00000363181 77 ntBASIC-3.92□□□□□ -3.04
CUX1P39880 Y_RNA.276-201ENST00000364732 109 ntBASIC-3.92□□□□□ -3.04
CUX1P39880 SNORD127-201ENST00000458892 86 ntBASIC-3.92□□□□□ -3.04
CUX1P39880 RNU7-121P-201ENST00000516604 62 ntBASIC-3.92□□□□□ -3.04
CUX1P39880 ST7-OT3_3.1-201ENST00000611709 115 ntBASIC-3.92□□□□□ -3.04
CUX1P39880 RNU6-330P-201ENST00000363015 107 ntBASIC-3.93□□□□□ -3.04
CUX1P39880 RNU6-604P-201ENST00000390917 100 ntBASIC-3.94□□□□□ -3.04
CUX1P39880 RNU6-239P-201ENST00000390990 99 ntBASIC-3.94□□□□□ -3.04
CUX1P39880 MTND4LP1-201ENST00000446263 157 ntBASIC-3.94□□□□□ -3.04
CUX1P39880 SNORA63-201ENST00000363450 132 ntBASIC-3.95□□□□□ -3.04
CUX1P39880 RNU6-810P-201ENST00000364001 107 ntBASIC-3.95□□□□□ -3.04
CUX1P39880 Y_RNA.705-201ENST00000516862 110 ntBASIC-3.95□□□□□ -3.04
CUX1P39880 RNU6-537P-201ENST00000517277 103 ntBASIC-3.95□□□□□ -3.04
CUX1P39880 Y_RNA.43-201ENST00000362670 111 ntBASIC-3.95□□□□□ -3.04
CUX1P39880 AL513128.1-201ENST00000422675 469 ntTSL 5 BASIC-3.95□□□□□ -3.04
CUX1P39880 AC062037.1-201ENST00000605302 128 ntBASIC-3.95□□□□□ -3.04
CUX1P39880 RNU6-1206P-201ENST00000516339 103 ntBASIC-3.96□□□□□ -3.04
CUX1P39880 RNU6-450P-201ENST00000364654 107 ntBASIC-3.97□□□□□ -3.05
CUX1P39880 RNA5SP173-201ENST00000364857 136 ntBASIC-3.97□□□□□ -3.05
CUX1P39880 RNY4P13-201ENST00000384284 96 ntBASIC-3.97□□□□□ -3.05
CUX1P39880 RNU6-1340P-201ENST00000384438 107 ntBASIC-3.97□□□□□ -3.05
CUX1P39880 RNU6-887P-201ENST00000410660 100 ntBASIC-3.97□□□□□ -3.05
CUX1P39880 Y_RNA.609-201ENST00000410669 89 ntBASIC-3.97□□□□□ -3.05
CUX1P39880 RNU6-795P-201ENST00000516323 103 ntBASIC-3.97□□□□□ -3.05
CUX1P39880 Y_RNA.688-201ENST00000516565 95 ntBASIC-3.97□□□□□ -3.05
CUX1P39880 RNU6-182P-201ENST00000516970 105 ntBASIC-3.97□□□□□ -3.05
CUX1P39880 RNU6-822P-201ENST00000362707 106 ntBASIC-3.98□□□□□ -3.05
CUX1P39880 Y_RNA.197-201ENST00000364004 102 ntBASIC-3.98□□□□□ -3.05
CUX1P39880 RNU6-781P-201ENST00000516377 101 ntBASIC-3.98□□□□□ -3.05
CUX1P39880 MIR3688-2-201ENST00000636963 87 ntBASIC-3.98□□□□□ -3.05
CUX1P39880 RNU6-1128P-201ENST00000362825 109 ntBASIC-3.99□□□□□ -3.05
CUX1P39880 AC020661.2-201ENST00000560114 134 ntBASIC-3.99□□□□□ -3.05
CUX1P39880 SNORD45.2-201ENST00000363552 72 ntBASIC-4□□□□□ -3.05
CUX1P39880 MIR656-201ENST00000385224 78 ntBASIC-4□□□□□ -3.05
CUX1P39880 RNU6-742P-201ENST00000365289 107 ntBASIC-4□□□□□ -3.05
CUX1P39880 CDKN3-212ENST00000620759 196 ntTSL 5 BASIC-4□□□□□ -3.05
CUX1P39880 Y_RNA.478-201ENST00000384358 107 ntBASIC-4.01□□□□□ -3.05
CUX1P39880 AC104211.3-201ENST00000518861 270 ntTSL 3 BASIC-4.01□□□□□ -3.05
CUX1P39880 Y_RNA.382-201ENST00000365672 114 ntBASIC-4.02□□□□□ -3.05
CUX1P39880 AL158147.1-201ENST00000443970 75 ntBASIC-4.02□□□□□ -3.05
CUX1P39880 AC139453.2-201ENST00000487255 133 ntBASIC-4.02□□□□□ -3.05
CUX1P39880 MIR5009-201ENST00000578736 100 ntBASIC-4.02□□□□□ -3.05
CUX1P39880 MIR7110-201ENST00000612638 86 ntBASIC-4.02□□□□□ -3.05
CUX1P39880 Y_RNA.96-201ENST00000363092 109 ntBASIC-4.03□□□□□ -3.05
CUX1P39880 Y_RNA.210-201ENST00000364161 110 ntBASIC-4.03□□□□□ -3.05
CUX1P39880 AC093831.1-201ENST00000509166 434 ntTSL 3 BASIC-4.03□□□□□ -3.05
CUX1P39880 RNU6-624P-201ENST00000363411 107 ntBASIC-4.04□□□□□ -3.06
CUX1P39880 SNORD116-10-201ENST00000363791 102 ntBASIC-4.04□□□□□ -3.06
CUX1P39880 RNU6-915P-201ENST00000364943 103 ntBASIC-4.04□□□□□ -3.06
CUX1P39880 ZEB1-AS1-204ENST00000450834 576 ntTSL 3 BASIC-4.04□□□□□ -3.06
CUX1P39880 RNU6-1108P-201ENST00000516308 104 ntBASIC-4.04□□□□□ -3.06
CUX1P39880 TRAJ61-201ENST00000390479 60 ntAPPRIS P1 BASIC-4.05□□□□□ -3.06
CUX1P39880 Y_RNA.709-201ENST00000516952 92 ntBASIC-4.05□□□□□ -3.06
CUX1P39880 Y_RNA.516-201ENST00000384541 124 ntBASIC-4.05□□□□□ -3.06
CUX1P39880 Y_RNA.17-201ENST00000362433 111 ntBASIC-4.06□□□□□ -3.06
CUX1P39880 Y_RNA.277-201ENST00000364754 102 ntBASIC-4.06□□□□□ -3.06
CUX1P39880 RNU2-16P-201ENST00000410712 136 ntBASIC-4.06□□□□□ -3.06
CUX1P39880 KCNQ1OT1_3.1-201ENST00000616504 116 ntBASIC-4.06□□□□□ -3.06
CUX1P39880 RNU4-40P-201ENST00000364351 143 ntBASIC-4.08□□□□□ -3.06
CUX1P39880 AL451105.1-201ENST00000450005 189 ntBASIC-4.08□□□□□ -3.06
CUX1P39880 RNU6-303P-201ENST00000517091 106 ntBASIC-4.08□□□□□ -3.06
CUX1P39880 AP001340.1-201ENST00000624405 217 ntBASIC-4.08□□□□□ -3.06
CUX1P39880 RNU6-460P-201ENST00000391158 108 ntBASIC-4.09□□□□□ -3.06
CUX1P39880 RNU6-918P-201ENST00000391219 106 ntBASIC-4.09□□□□□ -3.06
CUX1P39880 Y_RNA.626-201ENST00000411288 95 ntBASIC-4.09□□□□□ -3.06
CUX1P39880 MTND2P23-201ENST00000422990 651 ntBASIC-4.09□□□□□ -3.06
CUX1P39880 RNU7-197P-201ENST00000458836 62 ntBASIC-4.09□□□□□ -3.06
CUX1P39880 MIR519C-201ENST00000385053 87 ntBASIC-4.1□□□□□ -3.07
CUX1P39880 SNORD116.2-201ENST00000391251 93 ntBASIC-4.1□□□□□ -3.07
CUX1P39880 RNA5SP224-201ENST00000365069 126 ntBASIC-4.11□□□□□ -3.07
CUX1P39880 SNORD45C-201ENST00000383893 79 ntBASIC-4.11□□□□□ -3.07
CUX1P39880 RNU6-277P-201ENST00000516272 106 ntBASIC-4.11□□□□□ -3.07
CUX1P39880 SNORA8.1-201ENST00000384250 140 ntBASIC-4.11□□□□□ -3.07
CUX1P39880 MIR8053-201ENST00000613344 75 ntBASIC-4.11□□□□□ -3.07
CUX1P39880 SNORD113.1-201ENST00000363280 73 ntBASIC-4.12□□□□□ -3.07
Retrieved 100 of 98,524 protein–RNA pairs in 170.3 ms