Protein–RNA interactions for Protein: P33076

CIITA, MHC class II transactivator, humanhuman

Predictions only

Length 1,130 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CIITAP33076 Y_RNA.696-201ENST00000516725 107 ntBASIC-0.22□□□□□ -2.44
CIITAP33076 MIR8053-201ENST00000613344 75 ntBASIC-0.22□□□□□ -2.44
CIITAP33076 uc_338.36-201ENST00000622331 158 ntBASIC-0.22□□□□□ -2.44
CIITAP33076 MIR196A2-201ENST00000385189 110 ntBASIC-0.23□□□□□ -2.45
CIITAP33076 SNORD75.1-201ENST00000408373 60 ntBASIC-0.23□□□□□ -2.45
CIITAP33076 U2.7-201ENST00000619197 100 ntBASIC-0.23□□□□□ -2.45
CIITAP33076 AL391099.1-201ENST00000624635 187 ntBASIC-0.23□□□□□ -2.45
CIITAP33076 SNORD95.1-201ENST00000364099 68 ntBASIC-0.24□□□□□ -2.45
CIITAP33076 SNORD115-31-201ENST00000365318 82 ntBASIC-0.24□□□□□ -2.45
CIITAP33076 MIR224-201ENST00000384889 81 ntBASIC-0.24□□□□□ -2.45
CIITAP33076 RNU6-320P-201ENST00000516511 106 ntBASIC-0.24□□□□□ -2.45
CIITAP33076 MIR4280-201ENST00000582178 76 ntBASIC-0.24□□□□□ -2.45
CIITAP33076 MIR3666-201ENST00000607845 111 ntBASIC-0.24□□□□□ -2.45
CIITAP33076 RNA5SP275-201ENST00000363936 118 ntBASIC-0.25□□□□□ -2.45
CIITAP33076 RNU6-1015P-201ENST00000517121 99 ntBASIC-0.25□□□□□ -2.45
CIITAP33076 MIR4432-201ENST00000581823 84 ntBASIC-0.25□□□□□ -2.45
CIITAP33076 MIR4436A-201ENST00000585278 85 ntBASIC-0.25□□□□□ -2.45
CIITAP33076 MIR409-201ENST00000362237 79 ntBASIC-0.26□□□□□ -2.45
CIITAP33076 RNU6-411P-201ENST00000384451 107 ntBASIC-0.26□□□□□ -2.45
CIITAP33076 MIR5704-201ENST00000584029 77 ntBASIC-0.26□□□□□ -2.45
CIITAP33076 Y_RNA.244-201ENST00000364484 109 ntBASIC-0.27□□□□□ -2.45
CIITAP33076 SNORD116-24-201ENST00000384549 92 ntBASIC-0.27□□□□□ -2.45
CIITAP33076 MIR519A2-201ENST00000384990 87 ntBASIC-0.27□□□□□ -2.45
CIITAP33076 RNA5SP300-201ENST00000391197 107 ntBASIC-0.27□□□□□ -2.45
CIITAP33076 MIR154-201ENST00000385243 84 ntBASIC-0.28□□□□□ -2.45
CIITAP33076 TRAJ28-201ENST00000390509 66 ntAPPRIS P1 BASIC-0.28□□□□□ -2.45
CIITAP33076 MIR889-201ENST00000401280 79 ntBASIC-0.28□□□□□ -2.45
CIITAP33076 RNU6ATAC29P-201ENST00000408088 125 ntBASIC-0.28□□□□□ -2.45
CIITAP33076 MIR8068-201ENST00000618032 68 ntBASIC-0.28□□□□□ -2.45
CIITAP33076 AC114755.3-201ENST00000481111 251 ntBASIC-0.29□□□□□ -2.46
CIITAP33076 RNU6-1089P-201ENST00000516473 104 ntBASIC-0.29□□□□□ -2.46
CIITAP33076 AL353803.5-201ENST00000599815 141 ntBASIC-0.29□□□□□ -2.46
CIITAP33076 SNORD114-11-201ENST00000363738 75 ntBASIC-0.3□□□□□ -2.46
CIITAP33076 SNORA32.3-201ENST00000384772 121 ntBASIC-0.3□□□□□ -2.46
CIITAP33076 RNA5SP266-201ENST00000410273 108 ntBASIC-0.3□□□□□ -2.46
CIITAP33076 RNU6-1133P-201ENST00000410963 100 ntBASIC-0.3□□□□□ -2.46
CIITAP33076 RNA5SP470-201ENST00000516463 106 ntBASIC-0.3□□□□□ -2.46
CIITAP33076 MIR4464-201ENST00000580818 92 ntBASIC-0.3□□□□□ -2.46
CIITAP33076 MIR548AZ-201ENST00000616567 95 ntBASIC-0.3□□□□□ -2.46
CIITAP33076 SYCP2-202ENST00000371001 5479 ntAPPRIS P2 TSL 1 (best) BASIC-0.3□□□□□ -2.46
CIITAP33076 RNU6-901P-201ENST00000384593 106 ntBASIC-0.31□□□□□ -2.46
CIITAP33076 RNU7-174P-201ENST00000516248 59 ntBASIC-0.31□□□□□ -2.46
CIITAP33076 RNA5SP66-201ENST00000517178 101 ntBASIC-0.31□□□□□ -2.46
CIITAP33076 MIR548AG1-201ENST00000579932 66 ntBASIC-0.31□□□□□ -2.46
CIITAP33076 MIR4263-201ENST00000584745 83 ntBASIC-0.31□□□□□ -2.46
CIITAP33076 snoR1.1-201ENST00000628177 80 ntBASIC-0.31□□□□□ -2.46
CIITAP33076 RNU4-63P-201ENST00000411313 118 ntBASIC-0.32□□□□□ -2.46
CIITAP33076 AL445193.1-201ENST00000441183 141 ntBASIC-0.32□□□□□ -2.46
CIITAP33076 AL021921.1-201ENST00000442774 93 ntBASIC-0.32□□□□□ -2.46
CIITAP33076 RNU6-634P-201ENST00000459134 106 ntBASIC-0.32□□□□□ -2.46
CIITAP33076 SNORD126-201ENST00000459475 77 ntBASIC-0.32□□□□□ -2.46
CIITAP33076 RNU6-518P-201ENST00000516056 96 ntBASIC-0.32□□□□□ -2.46
CIITAP33076 RNU7-154P-201ENST00000516194 62 ntBASIC-0.32□□□□□ -2.46
CIITAP33076 AC020913.3-201ENST00000594678 125 ntTSL 3 BASIC-0.32□□□□□ -2.46
CIITAP33076 MIR4788-201ENST00000639104 80 ntBASIC-0.32□□□□□ -2.46
CIITAP33076 Y_RNA.391-201ENST00000383933 94 ntBASIC-0.33□□□□□ -2.46
CIITAP33076 MTND4LP1-201ENST00000446263 157 ntBASIC-0.33□□□□□ -2.46
CIITAP33076 MIR6854-201ENST00000614935 69 ntBASIC-0.33□□□□□ -2.46
CIITAP33076 MIR6851-201ENST00000617060 67 ntBASIC-0.33□□□□□ -2.46
CIITAP33076 RNU6-1216P-201ENST00000362590 107 ntBASIC-0.34□□□□□ -2.46
CIITAP33076 RNU6-776P-201ENST00000364403 104 ntBASIC-0.34□□□□□ -2.46
CIITAP33076 RNU6-1022P-201ENST00000365049 104 ntBASIC-0.34□□□□□ -2.46
CIITAP33076 RNU6-540P-201ENST00000384622 101 ntBASIC-0.34□□□□□ -2.46
CIITAP33076 SNORD38.3-201ENST00000516599 73 ntBASIC-0.34□□□□□ -2.46
CIITAP33076 Y_RNA.698-201ENST00000516798 118 ntBASIC-0.34□□□□□ -2.46
CIITAP33076 RNU6-668P-201ENST00000364180 107 ntBASIC-0.35□□□□□ -2.47
CIITAP33076 Y_RNA.457-201ENST00000384237 111 ntBASIC-0.35□□□□□ -2.47
CIITAP33076 MIR6888-201ENST00000621977 67 ntBASIC-0.35□□□□□ -2.47
CIITAP33076 RNA5SP169-201ENST00000517268 117 ntBASIC-0.36□□□□□ -2.47
CIITAP33076 HOTAIRM1_3.1-201ENST00000619974 59 ntBASIC-0.36□□□□□ -2.47
CIITAP33076 MIR4662A-201ENST00000637499 67 ntBASIC-0.36□□□□□ -2.47
CIITAP33076 SNORD14C-201ENST00000365382 88 ntBASIC-0.37□□□□□ -2.47
CIITAP33076 RNU6-895P-201ENST00000384125 103 ntBASIC-0.37□□□□□ -2.47
CIITAP33076 Y_RNA.545-201ENST00000384652 105 ntBASIC-0.37□□□□□ -2.47
CIITAP33076 MIR548C-201ENST00000384815 97 ntBASIC-0.37□□□□□ -2.47
CIITAP33076 RNU6-284P-201ENST00000411105 106 ntBASIC-0.37□□□□□ -2.47
CIITAP33076 RNY1P9-201ENST00000532431 109 ntBASIC-0.37□□□□□ -2.47
CIITAP33076 AL445584.3-201ENST00000617173 78 ntBASIC-0.37□□□□□ -2.47
CIITAP33076 U4.4-201ENST00000620626 117 ntBASIC-0.37□□□□□ -2.47
CIITAP33076 AC093726.3-201ENST00000637588 150 ntBASIC-0.37□□□□□ -2.47
CIITAP33076 SNORA62.4-201ENST00000365504 151 ntBASIC-0.38□□□□□ -2.47
CIITAP33076 TRAJ57-201ENST00000390482 63 ntAPPRIS P1 BASIC-0.38□□□□□ -2.47
CIITAP33076 RNU6-1246P-201ENST00000391064 107 ntBASIC-0.38□□□□□ -2.47
CIITAP33076 RNA5SP215-201ENST00000363440 122 ntBASIC-0.39□□□□□ -2.47
CIITAP33076 MIR517B-201ENST00000385102 67 ntBASIC-0.39□□□□□ -2.47
CIITAP33076 RNU6-698P-201ENST00000363523 107 ntBASIC-0.4□□□□□ -2.47
CIITAP33076 RNU6-34P-201ENST00000364874 107 ntBASIC-0.4□□□□□ -2.47
CIITAP33076 Y_RNA.375-201ENST00000365625 101 ntBASIC-0.4□□□□□ -2.47
CIITAP33076 Y_RNA.565-201ENST00000384719 101 ntBASIC-0.4□□□□□ -2.47
CIITAP33076 AL500527.2-201ENST00000454105 95 ntBASIC-0.4□□□□□ -2.47
CIITAP33076 SCARNA17-201ENST00000516183 144 ntBASIC-0.41□□□□□ -2.48
CIITAP33076 RNU6-638P-201ENST00000516582 104 ntBASIC-0.41□□□□□ -2.48
CIITAP33076 MIR548V-201ENST00000584165 80 ntBASIC-0.41□□□□□ -2.48
CIITAP33076 Y_RNA.246-201ENST00000364495 108 ntBASIC-0.42□□□□□ -2.48
CIITAP33076 Y_RNA.325-201ENST00000365171 122 ntBASIC-0.42□□□□□ -2.48
CIITAP33076 MIR630-201ENST00000384957 97 ntBASIC-0.43□□□□□ -2.48
CIITAP33076 MIR548AX-201ENST00000580117 73 ntBASIC-0.43□□□□□ -2.48
CIITAP33076 Y_RNA.74-201ENST00000362911 99 ntBASIC-0.44□□□□□ -2.48
CIITAP33076 RNU6-663P-201ENST00000391105 106 ntBASIC-0.44□□□□□ -2.48
CIITAP33076 SNX3P1X-201ENST00000414887 175 ntBASIC-0.44□□□□□ -2.48
Retrieved 100 of 98,524 protein–RNA pairs in 174.9 ms