Protein–RNA interactions for Protein: P28702

RXRB, Retinoic acid receptor RXR-beta, humanhuman

Predictions only

Length 533 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RXRBP28702 CEP290-203ENST00000547691 5968 ntTSL 1 (best) BASIC0.73□□□□□ -2.29
RXRBP28702 Y_RNA.109-201ENST00000363215 102 ntBASIC0.72□□□□□ -2.29
RXRBP28702 RNA5SP470-201ENST00000516463 106 ntBASIC0.72□□□□□ -2.29
RXRBP28702 RNU6-980P-201ENST00000516925 103 ntBASIC0.72□□□□□ -2.29
RXRBP28702 C18orf54-201ENST00000300091 5237 ntAPPRIS P1 TSL 1 (best) BASIC0.71□□□□□ -2.3
RXRBP28702 SNORD1B-201ENST00000363091 84 ntBASIC0.71□□□□□ -2.3
RXRBP28702 SNORD115-23-201ENST00000364461 82 ntBASIC0.71□□□□□ -2.3
RXRBP28702 RNU6-945P-201ENST00000383947 107 ntBASIC0.71□□□□□ -2.3
RXRBP28702 RNU6-246P-201ENST00000384702 107 ntBASIC0.7□□□□□ -2.3
RXRBP28702 MIR106A-201ENST00000384870 81 ntBASIC0.7□□□□□ -2.3
RXRBP28702 AC114737.2-201ENST00000421583 173 ntBASIC0.7□□□□□ -2.3
RXRBP28702 SNORD116.2-201ENST00000391251 93 ntBASIC0.69□□□□□ -2.3
RXRBP28702 MIR103A1-201ENST00000362165 78 ntBASIC0.68□□□□□ -2.3
RXRBP28702 RNU6ATAC11P-201ENST00000408541 125 ntBASIC0.68□□□□□ -2.3
RXRBP28702 RNA5SP25-201ENST00000410815 110 ntBASIC0.68□□□□□ -2.3
RXRBP28702 LINC00345-201ENST00000443679 285 ntTSL 5 BASIC0.68□□□□□ -2.3
RXRBP28702 SNORA68.3-201ENST00000515906 83 ntBASIC0.68□□□□□ -2.3
RXRBP28702 MIR7110-201ENST00000612638 86 ntBASIC0.68□□□□□ -2.3
RXRBP28702 RNU6-458P-201ENST00000384179 107 ntBASIC0.67□□□□□ -2.3
RXRBP28702 RNU6-30P-201ENST00000384561 107 ntBASIC0.67□□□□□ -2.3
RXRBP28702 TRGJP-201ENST00000390338 61 ntAPPRIS P1 BASIC0.67□□□□□ -2.3
RXRBP28702 SCARNA11.2-201ENST00000517183 154 ntBASIC0.67□□□□□ -2.3
RXRBP28702 AL353803.5-201ENST00000599815 141 ntBASIC0.67□□□□□ -2.3
RXRBP28702 U6.58-201ENST00000613107 107 ntBASIC0.67□□□□□ -2.3
RXRBP28702 Y_RNA.698-201ENST00000516798 118 ntBASIC0.66□□□□□ -2.3
RXRBP28702 HOTAIRM1_3.1-201ENST00000619974 59 ntBASIC0.66□□□□□ -2.3
RXRBP28702 RNU6-172P-201ENST00000411000 93 ntBASIC0.65□□□□□ -2.31
RXRBP28702 RNU4-88P-201ENST00000411220 86 ntBASIC0.65□□□□□ -2.31
RXRBP28702 RNU7-129P-201ENST00000516128 62 ntBASIC0.65□□□□□ -2.31
RXRBP28702 CCDC7-215ENST00000639629 4158 ntAPPRIS ALT2 TSL 5 BASIC0.64□□□□□ -2.31
RXRBP28702 RNU6-810P-201ENST00000364001 107 ntBASIC0.64□□□□□ -2.31
RXRBP28702 SNORA40B-201ENST00000385573 128 ntBASIC0.64□□□□□ -2.31
RXRBP28702 LINC01984-201ENST00000583863 301 ntTSL 3 BASIC0.64□□□□□ -2.31
RXRBP28702 Y_RNA.379-201ENST00000365653 102 ntBASIC0.63□□□□□ -2.31
RXRBP28702 RNU6-127P-201ENST00000390897 107 ntBASIC0.63□□□□□ -2.31
RXRBP28702 Z95118.1-201ENST00000421372 247 ntBASIC0.63□□□□□ -2.31
RXRBP28702 AP000676.1-201ENST00000533307 52 ntBASIC0.63□□□□□ -2.31
RXRBP28702 MIRLET7D-201ENST00000362263 87 ntBASIC0.61□□□□□ -2.31
RXRBP28702 RNU6-753P-201ENST00000363926 107 ntBASIC0.61□□□□□ -2.31
RXRBP28702 RNU6-598P-201ENST00000364017 105 ntBASIC0.61□□□□□ -2.31
RXRBP28702 MIR4490-201ENST00000582647 84 ntBASIC0.61□□□□□ -2.31
RXRBP28702 RNU6-815P-201ENST00000384080 113 ntBASIC0.6□□□□□ -2.31
RXRBP28702 SNORA50A-201ENST00000384225 134 ntBASIC0.6□□□□□ -2.31
RXRBP28702 MIR548H2-201ENST00000408874 88 ntBASIC0.6□□□□□ -2.31
RXRBP28702 MIR4464-201ENST00000580818 92 ntBASIC0.6□□□□□ -2.31
RXRBP28702 AC090625.1-201ENST00000357130 210 ntBASIC0.59□□□□□ -2.31
RXRBP28702 MIR92A1-201ENST00000385233 78 ntBASIC0.59□□□□□ -2.31
RXRBP28702 AC008883.1-201ENST00000506562 193 ntTSL 3 BASIC0.59□□□□□ -2.31
RXRBP28702 MIR548X-201ENST00000580069 75 ntBASIC0.58□□□□□ -2.32
RXRBP28702 SPRY4-IT1_2.1-201ENST00000612613 121 ntBASIC0.58□□□□□ -2.32
RXRBP28702 MIR6718-201ENST00000616153 80 ntBASIC0.58□□□□□ -2.32
RXRBP28702 uc_338.17-201ENST00000619633 179 ntBASIC0.58□□□□□ -2.32
RXRBP28702 U2.18-201ENST00000622185 84 ntBASIC0.58□□□□□ -2.32
RXRBP28702 RNU4-33P-201ENST00000364316 85 ntBASIC0.57□□□□□ -2.32
RXRBP28702 RNA5SP98-201ENST00000363158 137 ntBASIC0.56□□□□□ -2.32
RXRBP28702 RNU7-55P-201ENST00000459426 62 ntBASIC0.56□□□□□ -2.32
RXRBP28702 MIR4432-201ENST00000581823 84 ntBASIC0.56□□□□□ -2.32
RXRBP28702 MIR6888-201ENST00000621977 67 ntBASIC0.56□□□□□ -2.32
RXRBP28702 SAMD9-203ENST00000620985 6754 ntAPPRIS P1 TSL 2 BASIC0.56□□□□□ -2.32
RXRBP28702 MIR429-201ENST00000362106 83 ntBASIC0.55□□□□□ -2.32
RXRBP28702 AC108740.1-201ENST00000498629 225 ntBASIC0.55□□□□□ -2.32
RXRBP28702 AC108676.2-201ENST00000605225 163 ntBASIC0.55□□□□□ -2.32
RXRBP28702 SNORD114-15-201ENST00000364687 72 ntBASIC0.53□□□□□ -2.32
RXRBP28702 RNU6-1262P-201ENST00000516217 96 ntBASIC0.53□□□□□ -2.32
RXRBP28702 AC069113.3-201ENST00000521019 150 ntBASIC0.53□□□□□ -2.32
RXRBP28702 MIR579-201ENST00000385221 98 ntBASIC0.52□□□□□ -2.33
RXRBP28702 MIR643-201ENST00000385267 97 ntBASIC0.52□□□□□ -2.33
RXRBP28702 RNU7-151P-201ENST00000516930 53 ntBASIC0.52□□□□□ -2.33
RXRBP28702 MIR5190-201ENST00000581537 80 ntBASIC0.52□□□□□ -2.33
RXRBP28702 AL445584.3-201ENST00000617173 78 ntBASIC0.52□□□□□ -2.33
RXRBP28702 RNU6-758P-201ENST00000516292 89 ntBASIC0.51□□□□□ -2.33
RXRBP28702 RNU6-419P-201ENST00000517030 63 ntBASIC0.51□□□□□ -2.33
RXRBP28702 uc_338.36-201ENST00000622331 158 ntBASIC0.51□□□□□ -2.33
RXRBP28702 AL391099.1-201ENST00000624635 187 ntBASIC0.51□□□□□ -2.33
RXRBP28702 RNU6-180P-201ENST00000516697 61 ntBASIC0.5□□□□□ -2.33
RXRBP28702 MIR6507-201ENST00000613630 70 ntBASIC0.5□□□□□ -2.33
RXRBP28702 MIR6514-201ENST00000622549 70 ntBASIC0.5□□□□□ -2.33
RXRBP28702 RNU6-973P-201ENST00000364690 107 ntBASIC0.49□□□□□ -2.33
RXRBP28702 RNU6-1327P-201ENST00000365302 105 ntBASIC0.49□□□□□ -2.33
RXRBP28702 AC096531.1-201ENST00000419107 107 ntBASIC0.49□□□□□ -2.33
RXRBP28702 U7.5-201ENST00000517224 61 ntBASIC0.49□□□□□ -2.33
RXRBP28702 DLEU2_4.2-201ENST00000616613 58 ntBASIC0.49□□□□□ -2.33
RXRBP28702 snoR1.1-201ENST00000628177 80 ntBASIC0.49□□□□□ -2.33
RXRBP28702 MIR409-201ENST00000362237 79 ntBASIC0.48□□□□□ -2.33
RXRBP28702 RNU6-924P-201ENST00000362926 108 ntBASIC0.48□□□□□ -2.33
RXRBP28702 Y_RNA.185-201ENST00000363894 100 ntBASIC0.48□□□□□ -2.33
RXRBP28702 RNU6-900P-201ENST00000384498 102 ntBASIC0.48□□□□□ -2.33
RXRBP28702 RNU6-696P-201ENST00000390834 107 ntBASIC0.48□□□□□ -2.33
RXRBP28702 CR383656.4-201ENST00000546909 122 ntBASIC0.48□□□□□ -2.33
RXRBP28702 MIR125B1-201ENST00000385236 88 ntBASIC0.47□□□□□ -2.33
RXRBP28702 RNU7-160P-201ENST00000516660 62 ntBASIC0.47□□□□□ -2.33
RXRBP28702 Y_RNA.69-201ENST00000362885 109 ntBASIC0.46□□□□□ -2.34
RXRBP28702 MIR548F3-201ENST00000408509 87 ntBASIC0.46□□□□□ -2.34
RXRBP28702 SNORD57-201ENST00000448188 72 ntBASIC0.46□□□□□ -2.34
RXRBP28702 RNA5SP163-201ENST00000410304 99 ntBASIC0.45□□□□□ -2.34
RXRBP28702 RNU6-1206P-201ENST00000516339 103 ntBASIC0.45□□□□□ -2.34
RXRBP28702 MIR8068-201ENST00000618032 68 ntBASIC0.45□□□□□ -2.34
RXRBP28702 SNORA62.4-201ENST00000365504 151 ntBASIC0.44□□□□□ -2.34
RXRBP28702 RNU6-455P-201ENST00000384681 107 ntBASIC0.44□□□□□ -2.34
RXRBP28702 RNU6-1267P-201ENST00000410747 107 ntBASIC0.44□□□□□ -2.34
Retrieved 100 of 98,524 protein–RNA pairs in 249.2 ms