Protein–RNA interactions for Protein: A6NC98

CCDC88B, Coiled-coil domain-containing protein 88B, humanhuman

Predictions only

Length 1,476 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88BA6NC98 Y_RNA.69-201ENST00000362885 109 ntBASIC-4.78□□□□□ -3.17
CCDC88BA6NC98 Y_RNA.259-201ENST00000364619 101 ntBASIC-4.78□□□□□ -3.17
CCDC88BA6NC98 RNU6-1296P-201ENST00000383879 107 ntBASIC-4.79□□□□□ -3.18
CCDC88BA6NC98 Y_RNA.573-201ENST00000384763 105 ntBASIC-4.79□□□□□ -3.18
CCDC88BA6NC98 RNU6-972P-201ENST00000391208 107 ntBASIC-4.8□□□□□ -3.18
CCDC88BA6NC98 AC130289.1-201ENST00000577321 73 ntBASIC-4.8□□□□□ -3.18
CCDC88BA6NC98 MIR3611-201ENST00000584484 83 ntBASIC-4.81□□□□□ -3.18
CCDC88BA6NC98 MIR1252-201ENST00000408861 65 ntBASIC-4.81□□□□□ -3.18
CCDC88BA6NC98 CDKN3-212ENST00000620759 196 ntTSL 5 BASIC-4.81□□□□□ -3.18
CCDC88BA6NC98 AC093831.1-201ENST00000509166 434 ntTSL 3 BASIC-4.82□□□□□ -3.18
CCDC88BA6NC98 Y_RNA.705-201ENST00000516862 110 ntBASIC-4.82□□□□□ -3.18
CCDC88BA6NC98 Y_RNA.9-201ENST00000362354 101 ntBASIC-4.83□□□□□ -3.18
CCDC88BA6NC98 Y_RNA.688-201ENST00000516565 95 ntBASIC-4.83□□□□□ -3.18
CCDC88BA6NC98 RNU6-822P-201ENST00000362707 106 ntBASIC-4.84□□□□□ -3.18
CCDC88BA6NC98 SNORD45.2-201ENST00000363552 72 ntBASIC-4.84□□□□□ -3.18
CCDC88BA6NC98 RNU6-755P-201ENST00000364400 103 ntBASIC-4.84□□□□□ -3.18
CCDC88BA6NC98 RNU6-450P-201ENST00000364654 107 ntBASIC-4.84□□□□□ -3.18
CCDC88BA6NC98 MIR1302-6-201ENST00000408466 90 ntBASIC-4.84□□□□□ -3.18
CCDC88BA6NC98 RNU6-781P-201ENST00000516377 101 ntBASIC-4.84□□□□□ -3.18
CCDC88BA6NC98 Y_RNA.680-201ENST00000516441 93 ntBASIC-4.84□□□□□ -3.18
CCDC88BA6NC98 Y_RNA.187-201ENST00000363918 113 ntBASIC-4.85□□□□□ -3.19
CCDC88BA6NC98 RNU6-823P-201ENST00000391042 103 ntBASIC-4.85□□□□□ -3.19
CCDC88BA6NC98 U2.14-201ENST00000615943 113 ntBASIC-4.85□□□□□ -3.19
CCDC88BA6NC98 Y_RNA.718-201ENST00000517110 102 ntBASIC-4.86□□□□□ -3.19
CCDC88BA6NC98 RNU6-537P-201ENST00000517277 103 ntBASIC-4.86□□□□□ -3.19
CCDC88BA6NC98 AC090971.5-201ENST00000621102 293 ntBASIC-4.86□□□□□ -3.19
CCDC88BA6NC98 AC090582.1-201ENST00000636321 199 ntBASIC-4.86□□□□□ -3.19
CCDC88BA6NC98 RNU6-887P-201ENST00000410660 100 ntBASIC-4.87□□□□□ -3.19
CCDC88BA6NC98 RNU6-1143P-201ENST00000516125 104 ntBASIC-4.87□□□□□ -3.19
CCDC88BA6NC98 RNU6-182P-201ENST00000516970 105 ntBASIC-4.87□□□□□ -3.19
CCDC88BA6NC98 AC113139.1-201ENST00000605049 239 ntBASIC-4.87□□□□□ -3.19
CCDC88BA6NC98 SNORA8.1-201ENST00000384250 140 ntBASIC-4.88□□□□□ -3.19
CCDC88BA6NC98 MIR124-1-201ENST00000385275 85 ntBASIC-4.88□□□□□ -3.19
CCDC88BA6NC98 RNU6-584P-201ENST00000410350 95 ntBASIC-4.88□□□□□ -3.19
CCDC88BA6NC98 MIR4643-201ENST00000577473 78 ntBASIC-4.88□□□□□ -3.19
CCDC88BA6NC98 hsa-mir-3119-1.1-201ENST00000577602 85 ntBASIC-4.88□□□□□ -3.19
CCDC88BA6NC98 RNU6-506P-201ENST00000516553 94 ntBASIC-4.89□□□□□ -3.19
CCDC88BA6NC98 RNU6-810P-201ENST00000364001 107 ntBASIC-4.9□□□□□ -3.19
CCDC88BA6NC98 RNU6-915P-201ENST00000364943 103 ntBASIC-4.91□□□□□ -3.2
CCDC88BA6NC98 SNORD116-29-201ENST00000384516 83 ntBASIC-4.91□□□□□ -3.2
CCDC88BA6NC98 AC062037.1-201ENST00000605302 128 ntBASIC-4.91□□□□□ -3.2
CCDC88BA6NC98 RNU6-1340P-201ENST00000384438 107 ntBASIC-4.92□□□□□ -3.2
CCDC88BA6NC98 DNAJC19P2-201ENST00000593340 302 ntBASIC-4.92□□□□□ -3.2
CCDC88BA6NC98 Y_RNA.645-201ENST00000391229 102 ntBASIC-4.93□□□□□ -3.2
CCDC88BA6NC98 RNU6-854P-201ENST00000364036 107 ntBASIC-4.94□□□□□ -3.2
CCDC88BA6NC98 RNU6-1124P-201ENST00000384169 107 ntBASIC-4.94□□□□□ -3.2
CCDC88BA6NC98 MIR7110-201ENST00000612638 86 ntBASIC-4.94□□□□□ -3.2
CCDC88BA6NC98 SNORA63-201ENST00000363450 132 ntBASIC-4.94□□□□□ -3.2
CCDC88BA6NC98 SNORD116-10-201ENST00000363791 102 ntBASIC-4.94□□□□□ -3.2
CCDC88BA6NC98 RNU6-1206P-201ENST00000516339 103 ntBASIC-4.94□□□□□ -3.2
CCDC88BA6NC98 MIR656-201ENST00000385224 78 ntBASIC-4.95□□□□□ -3.2
CCDC88BA6NC98 RNU6-460P-201ENST00000391158 108 ntBASIC-4.95□□□□□ -3.2
CCDC88BA6NC98 MIR5009-201ENST00000578736 100 ntBASIC-4.95□□□□□ -3.2
CCDC88BA6NC98 KCNQ1OT1_3.1-201ENST00000616504 116 ntBASIC-4.95□□□□□ -3.2
CCDC88BA6NC98 Y_RNA.43-201ENST00000362670 111 ntBASIC-4.96□□□□□ -3.2
CCDC88BA6NC98 SNORD113.1-201ENST00000363280 73 ntBASIC-4.96□□□□□ -3.2
CCDC88BA6NC98 RNU6-239P-201ENST00000390990 99 ntBASIC-4.96□□□□□ -3.2
CCDC88BA6NC98 RNU6-303P-201ENST00000517091 106 ntBASIC-4.96□□□□□ -3.2
CCDC88BA6NC98 AL035470.1-201ENST00000622571 220 ntBASIC-4.96□□□□□ -3.2
CCDC88BA6NC98 MIR519C-201ENST00000385053 87 ntBASIC-4.97□□□□□ -3.21
CCDC88BA6NC98 MIR4679-2-201ENST00000578358 77 ntBASIC-4.97□□□□□ -3.21
CCDC88BA6NC98 Y_RNA.554-201ENST00000384672 102 ntBASIC-4.99□□□□□ -3.21
CCDC88BA6NC98 AL158147.1-201ENST00000443970 75 ntBASIC-4.99□□□□□ -3.21
CCDC88BA6NC98 ZEB1-AS1-204ENST00000450834 576 ntTSL 3 BASIC-4.99□□□□□ -3.21
CCDC88BA6NC98 RNU6-789P-201ENST00000517105 102 ntBASIC-4.99□□□□□ -3.21
CCDC88BA6NC98 Y_RNA.210-201ENST00000364161 110 ntBASIC-5□□□□□ -3.21
CCDC88BA6NC98 Y_RNA.478-201ENST00000384358 107 ntBASIC-5□□□□□ -3.21
CCDC88BA6NC98 AL513128.1-201ENST00000422675 469 ntTSL 5 BASIC-5□□□□□ -3.21
CCDC88BA6NC98 AC104211.3-201ENST00000518861 270 ntTSL 3 BASIC-5□□□□□ -3.21
CCDC88BA6NC98 RNU6-1128P-201ENST00000362825 109 ntBASIC-5□□□□□ -3.21
CCDC88BA6NC98 Y_RNA.387-201ENST00000383918 102 ntBASIC-5□□□□□ -3.21
CCDC88BA6NC98 TRAJ61-201ENST00000390479 60 ntAPPRIS P1 BASIC-5□□□□□ -3.21
CCDC88BA6NC98 SNORD116.2-201ENST00000391251 93 ntBASIC-5.01□□□□□ -3.21
CCDC88BA6NC98 Y_RNA.96-201ENST00000363092 109 ntBASIC-5.02□□□□□ -3.21
CCDC88BA6NC98 RNU7-121P-201ENST00000516604 62 ntBASIC-5.02□□□□□ -3.21
CCDC88BA6NC98 MIR8053-201ENST00000613344 75 ntBASIC-5.02□□□□□ -3.21
CCDC88BA6NC98 Y_RNA.277-201ENST00000364754 102 ntBASIC-5.03□□□□□ -3.21
CCDC88BA6NC98 AC139453.2-201ENST00000487255 133 ntBASIC-5.03□□□□□ -3.21
CCDC88BA6NC98 RNU6-1061P-201ENST00000516530 99 ntBASIC-5.03□□□□□ -3.21
CCDC88BA6NC98 AP001318.4-201ENST00000616637 121 ntBASIC-5.04□□□□□ -3.22
CCDC88BA6NC98 MIR548AH-201ENST00000637109 76 ntBASIC-5.04□□□□□ -3.22
CCDC88BA6NC98 RNY4P13-201ENST00000384284 96 ntBASIC-5.05□□□□□ -3.22
CCDC88BA6NC98 TRAJ53-201ENST00000390485 66 ntAPPRIS P1 BASIC-5.05□□□□□ -3.22
CCDC88BA6NC98 RNU6-624P-201ENST00000363411 107 ntBASIC-5.06□□□□□ -3.22
CCDC88BA6NC98 SCARNA23-201ENST00000516060 130 ntBASIC-5.06□□□□□ -3.22
CCDC88BA6NC98 Y_RNA.709-201ENST00000516952 92 ntBASIC-5.06□□□□□ -3.22
CCDC88BA6NC98 AC020661.2-201ENST00000560114 134 ntBASIC-5.07□□□□□ -3.22
CCDC88BA6NC98 RNU4-40P-201ENST00000364351 143 ntBASIC-5.07□□□□□ -3.22
CCDC88BA6NC98 Y_RNA.276-201ENST00000364732 109 ntBASIC-5.07□□□□□ -3.22
CCDC88BA6NC98 Y_RNA.382-201ENST00000365672 114 ntBASIC-5.07□□□□□ -3.22
CCDC88BA6NC98 AL451105.1-201ENST00000450005 189 ntBASIC-5.07□□□□□ -3.22
CCDC88BA6NC98 MTND2P23-201ENST00000422990 651 ntBASIC-5.08□□□□□ -3.22
CCDC88BA6NC98 AC074348.1-201ENST00000426503 132 ntBASIC-5.08□□□□□ -3.22
CCDC88BA6NC98 RNU7-152P-201ENST00000458982 64 ntBASIC-5.08□□□□□ -3.22
CCDC88BA6NC98 Y_RNA.17-201ENST00000362433 111 ntBASIC-5.09□□□□□ -3.22
CCDC88BA6NC98 RNU6-876P-201ENST00000391295 104 ntBASIC-5.1□□□□□ -3.23
CCDC88BA6NC98 SNORD45A-201ENST00000384512 84 ntBASIC-5.12□□□□□ -3.23
CCDC88BA6NC98 Y_RNA.626-201ENST00000411288 95 ntBASIC-5.12□□□□□ -3.23
CCDC88BA6NC98 RNU7-197P-201ENST00000458836 62 ntBASIC-5.12□□□□□ -3.23
CCDC88BA6NC98 SNORD58C-201ENST00000365223 64 ntBASIC-5.13□□□□□ -3.23
Retrieved 100 of 98,524 protein–RNA pairs in 175.5 ms