Protein–RNA interactions for Protein: Q9UPM8

AP4E1, AP-4 complex subunit epsilon-1, humanhuman

Predictions only

Length 1,137 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
AP4E1Q9UPM8 RNU6-1246P-201ENST00000391064 107 ntBASIC0.71□□□□□ -2.3
AP4E1Q9UPM8 AL021921.1-201ENST00000442774 93 ntBASIC0.71□□□□□ -2.3
AP4E1Q9UPM8 RNU6-863P-201ENST00000515989 104 ntBASIC0.71□□□□□ -2.3
AP4E1Q9UPM8 MIR6779-201ENST00000617283 64 ntBASIC0.71□□□□□ -2.3
AP4E1Q9UPM8 SNORD44.1-201ENST00000363202 61 ntBASIC0.7□□□□□ -2.3
AP4E1Q9UPM8 RNU6-518P-201ENST00000516056 96 ntBASIC0.7□□□□□ -2.3
AP4E1Q9UPM8 MIR3925-201ENST00000584674 77 ntBASIC0.7□□□□□ -2.3
AP4E1Q9UPM8 AC084368.1-201ENST00000620935 65 ntBASIC0.7□□□□□ -2.3
AP4E1Q9UPM8 RNU6-987P-201ENST00000384759 104 ntBASIC0.69□□□□□ -2.3
AP4E1Q9UPM8 MIR508-201ENST00000384857 115 ntBASIC0.69□□□□□ -2.3
AP4E1Q9UPM8 MIR216A-201ENST00000385063 110 ntBASIC0.69□□□□□ -2.3
AP4E1Q9UPM8 MIR1255B2-201ENST00000408618 67 ntBASIC0.69□□□□□ -2.3
AP4E1Q9UPM8 RN7SL793P-201ENST00000583259 296 ntBASIC0.69□□□□□ -2.3
AP4E1Q9UPM8 RN7SL660P-201ENST00000614852 299 ntBASIC0.69□□□□□ -2.3
AP4E1Q9UPM8 ZNF518A-209ENST00000614149 7911 ntAPPRIS P1 TSL 5 BASIC0.68□□□□□ -2.3
AP4E1Q9UPM8 RNU6-446P-201ENST00000362827 106 ntBASIC0.68□□□□□ -2.3
AP4E1Q9UPM8 Y_RNA.325-201ENST00000365171 122 ntBASIC0.68□□□□□ -2.3
AP4E1Q9UPM8 LINC00345-201ENST00000443679 285 ntTSL 5 BASIC0.68□□□□□ -2.3
AP4E1Q9UPM8 SNORA68.3-201ENST00000515906 83 ntBASIC0.68□□□□□ -2.3
AP4E1Q9UPM8 MIR3938-201ENST00000582157 103 ntBASIC0.68□□□□□ -2.3
AP4E1Q9UPM8 MIR499B-201ENST00000636498 73 ntBASIC0.68□□□□□ -2.3
AP4E1Q9UPM8 CCDC7-215ENST00000639629 4158 ntAPPRIS ALT2 TSL 5 BASIC0.68□□□□□ -2.3
AP4E1Q9UPM8 SNORA9.1-201ENST00000362412 131 ntBASIC0.67□□□□□ -2.3
AP4E1Q9UPM8 RNU6-1036P-201ENST00000383959 104 ntBASIC0.67□□□□□ -2.3
AP4E1Q9UPM8 MIRLET7B-201ENST00000385140 83 ntBASIC0.67□□□□□ -2.3
AP4E1Q9UPM8 RNU7-129P-201ENST00000516128 62 ntBASIC0.67□□□□□ -2.3
AP4E1Q9UPM8 Y_RNA.236-201ENST00000364427 111 ntBASIC0.66□□□□□ -2.3
AP4E1Q9UPM8 MIR519A2-201ENST00000384990 87 ntBASIC0.66□□□□□ -2.3
AP4E1Q9UPM8 RNU6-502P-201ENST00000362419 108 ntBASIC0.65□□□□□ -2.31
AP4E1Q9UPM8 SNORA41B-201ENST00000384785 128 ntBASIC0.65□□□□□ -2.31
AP4E1Q9UPM8 RNU4-37P-201ENST00000410214 84 ntBASIC0.65□□□□□ -2.31
AP4E1Q9UPM8 MIR103A1-201ENST00000362165 78 ntBASIC0.63□□□□□ -2.31
AP4E1Q9UPM8 SNORD115-25-201ENST00000362619 82 ntBASIC0.63□□□□□ -2.31
AP4E1Q9UPM8 RNU7-154P-201ENST00000516194 62 ntBASIC0.63□□□□□ -2.31
AP4E1Q9UPM8 MIR4714-201ENST00000580728 77 ntBASIC0.63□□□□□ -2.31
AP4E1Q9UPM8 MIRLET7D-201ENST00000362263 87 ntBASIC0.62□□□□□ -2.31
AP4E1Q9UPM8 RNA5SP436-201ENST00000516020 115 ntBASIC0.62□□□□□ -2.31
AP4E1Q9UPM8 Y_RNA.74-201ENST00000362911 99 ntBASIC0.61□□□□□ -2.31
AP4E1Q9UPM8 RNA5SP325-201ENST00000363756 130 ntBASIC0.61□□□□□ -2.31
AP4E1Q9UPM8 MIR106A-201ENST00000384870 81 ntBASIC0.61□□□□□ -2.31
AP4E1Q9UPM8 RNA5SP121-201ENST00000516537 101 ntBASIC0.61□□□□□ -2.31
AP4E1Q9UPM8 SCARNA11.2-201ENST00000517183 154 ntBASIC0.61□□□□□ -2.31
AP4E1Q9UPM8 MIR6513-201ENST00000621188 64 ntBASIC0.61□□□□□ -2.31
AP4E1Q9UPM8 RNU6-614P-201ENST00000384369 107 ntBASIC0.6□□□□□ -2.31
AP4E1Q9UPM8 MIR193B-201ENST00000384907 83 ntBASIC0.6□□□□□ -2.31
AP4E1Q9UPM8 MIR92A1-201ENST00000385233 78 ntBASIC0.6□□□□□ -2.31
AP4E1Q9UPM8 RNU6-782P-201ENST00000516852 104 ntBASIC0.6□□□□□ -2.31
AP4E1Q9UPM8 MIR548AG1-201ENST00000579932 66 ntBASIC0.6□□□□□ -2.31
AP4E1Q9UPM8 U6.59-201ENST00000615686 107 ntBASIC0.6□□□□□ -2.31
AP4E1Q9UPM8 SNORD116-16-201ENST00000384533 92 ntBASIC0.59□□□□□ -2.31
AP4E1Q9UPM8 RNU6-127P-201ENST00000390897 107 ntBASIC0.59□□□□□ -2.31
AP4E1Q9UPM8 SAMD9-203ENST00000620985 6754 ntAPPRIS P1 TSL 2 BASIC0.58□□□□□ -2.32
AP4E1Q9UPM8 SNORD114-23-201ENST00000363536 72 ntBASIC0.58□□□□□ -2.32
AP4E1Q9UPM8 Y_RNA.282-201ENST00000364793 102 ntBASIC0.58□□□□□ -2.32
AP4E1Q9UPM8 RNA5SP470-201ENST00000516463 106 ntBASIC0.58□□□□□ -2.32
AP4E1Q9UPM8 uc_338.17-201ENST00000619633 179 ntBASIC0.58□□□□□ -2.32
AP4E1Q9UPM8 RNA5SP347-201ENST00000362445 119 ntBASIC0.57□□□□□ -2.32
AP4E1Q9UPM8 SNORD113-4-201ENST00000364802 75 ntBASIC0.57□□□□□ -2.32
AP4E1Q9UPM8 MIR1273G-201ENST00000577677 100 ntBASIC0.57□□□□□ -2.32
AP4E1Q9UPM8 RNU6-815P-201ENST00000384080 113 ntBASIC0.56□□□□□ -2.32
AP4E1Q9UPM8 AC010487.4-201ENST00000637027 61 ntBASIC0.56□□□□□ -2.32
AP4E1Q9UPM8 SNORD115-23-201ENST00000364461 82 ntBASIC0.55□□□□□ -2.32
AP4E1Q9UPM8 MIR936-201ENST00000401264 98 ntBASIC0.55□□□□□ -2.32
AP4E1Q9UPM8 RNU6ATAC29P-201ENST00000408088 125 ntBASIC0.55□□□□□ -2.32
AP4E1Q9UPM8 RNA5SP499-201ENST00000363982 119 ntBASIC0.54□□□□□ -2.32
AP4E1Q9UPM8 MIR527-201ENST00000385244 85 ntBASIC0.53□□□□□ -2.32
AP4E1Q9UPM8 RNU6-141P-201ENST00000410499 105 ntBASIC0.53□□□□□ -2.32
AP4E1Q9UPM8 AC108740.1-201ENST00000498629 225 ntBASIC0.53□□□□□ -2.32
AP4E1Q9UPM8 AP000676.1-201ENST00000533307 52 ntBASIC0.53□□□□□ -2.32
AP4E1Q9UPM8 MIR5087-201ENST00000635826 76 ntBASIC0.53□□□□□ -2.32
AP4E1Q9UPM8 RNA5SP98-201ENST00000363158 137 ntBASIC0.52□□□□□ -2.33
AP4E1Q9UPM8 RNU6-520P-201ENST00000384717 104 ntBASIC0.52□□□□□ -2.33
AP4E1Q9UPM8 RNU6-231P-201ENST00000517122 103 ntBASIC0.52□□□□□ -2.33
AP4E1Q9UPM8 MIR924-201ENST00000638017 53 ntBASIC0.52□□□□□ -2.33
AP4E1Q9UPM8 RNA5SP62-201ENST00000363457 110 ntBASIC0.51□□□□□ -2.33
AP4E1Q9UPM8 AC069113.3-201ENST00000521019 150 ntBASIC0.51□□□□□ -2.33
AP4E1Q9UPM8 HOTAIRM1_3.1-201ENST00000619974 59 ntBASIC0.51□□□□□ -2.33
AP4E1Q9UPM8 MIR548H2-201ENST00000408874 88 ntBASIC0.5□□□□□ -2.33
AP4E1Q9UPM8 AL353803.5-201ENST00000599815 141 ntBASIC0.5□□□□□ -2.33
AP4E1Q9UPM8 RNA5SP457-201ENST00000363657 124 ntBASIC0.48□□□□□ -2.33
AP4E1Q9UPM8 MIR643-201ENST00000385267 97 ntBASIC0.48□□□□□ -2.33
AP4E1Q9UPM8 AC008883.1-201ENST00000506562 193 ntTSL 3 BASIC0.48□□□□□ -2.33
AP4E1Q9UPM8 MIR4711-201ENST00000578274 70 ntBASIC0.48□□□□□ -2.33
AP4E1Q9UPM8 Y_RNA.109-201ENST00000363215 102 ntBASIC0.47□□□□□ -2.33
AP4E1Q9UPM8 RNU6-246P-201ENST00000384702 107 ntBASIC0.47□□□□□ -2.33
AP4E1Q9UPM8 RNU7-119P-201ENST00000459279 63 ntBASIC0.47□□□□□ -2.33
AP4E1Q9UPM8 MIR6514-201ENST00000622549 70 ntBASIC0.47□□□□□ -2.33
AP4E1Q9UPM8 SNORD1B-201ENST00000363091 84 ntBASIC0.46□□□□□ -2.34
AP4E1Q9UPM8 RNU6-458P-201ENST00000384179 107 ntBASIC0.46□□□□□ -2.34
AP4E1Q9UPM8 AC114737.2-201ENST00000421583 173 ntBASIC0.46□□□□□ -2.34
AP4E1Q9UPM8 U6.58-201ENST00000613107 107 ntBASIC0.46□□□□□ -2.34
AP4E1Q9UPM8 MIR7978-201ENST00000636158 59 ntBASIC0.46□□□□□ -2.34
AP4E1Q9UPM8 CEP290-203ENST00000547691 5968 ntTSL 1 (best) BASIC0.46□□□□□ -2.34
AP4E1Q9UPM8 RNU6-1312P-201ENST00000362425 108 ntBASIC0.45□□□□□ -2.34
AP4E1Q9UPM8 RNU6-1327P-201ENST00000365302 105 ntBASIC0.45□□□□□ -2.34
AP4E1Q9UPM8 AC090625.1-201ENST00000357130 210 ntBASIC0.44□□□□□ -2.34
AP4E1Q9UPM8 RNU7-55P-201ENST00000459426 62 ntBASIC0.44□□□□□ -2.34
AP4E1Q9UPM8 Y_RNA.115-201ENST00000363272 98 ntBASIC0.43□□□□□ -2.34
AP4E1Q9UPM8 RNU6ATAC22P-201ENST00000516794 89 ntBASIC0.43□□□□□ -2.34
AP4E1Q9UPM8 CR383656.4-201ENST00000546909 122 ntBASIC0.43□□□□□ -2.34
Retrieved 100 of 98,524 protein–RNA pairs in 277.7 ms