Protein–RNA interactions for Protein: Q9UJU5

FOXD3, Forkhead box protein D3, humanhuman

Predicted RBP Predictions only

Length 478 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXD3Q9UJU5 U2.7-201ENST00000619197 100 ntBASIC0.56□□□□□ -2.32
FOXD3Q9UJU5 SAMD9-203ENST00000620985 6754 ntAPPRIS P1 TSL 2 BASIC0.56□□□□□ -2.32
FOXD3Q9UJU5 RNA5SP299-201ENST00000391203 116 ntBASIC0.55□□□□□ -2.32
FOXD3Q9UJU5 RNU6-782P-201ENST00000516852 104 ntBASIC0.55□□□□□ -2.32
FOXD3Q9UJU5 RNA5SP330-201ENST00000517096 96 ntBASIC0.55□□□□□ -2.32
FOXD3Q9UJU5 MIR4711-201ENST00000578274 70 ntBASIC0.55□□□□□ -2.32
FOXD3Q9UJU5 MIR548C-201ENST00000384815 97 ntBASIC0.54□□□□□ -2.32
FOXD3Q9UJU5 MIR106A-201ENST00000384870 81 ntBASIC0.54□□□□□ -2.32
FOXD3Q9UJU5 SNORA49-201ENST00000386157 136 ntBASIC0.54□□□□□ -2.32
FOXD3Q9UJU5 SCARNA11.2-201ENST00000517183 154 ntBASIC0.54□□□□□ -2.32
FOXD3Q9UJU5 uc_338.17-201ENST00000619633 179 ntBASIC0.54□□□□□ -2.32
FOXD3Q9UJU5 MIR5087-201ENST00000635826 76 ntBASIC0.54□□□□□ -2.32
FOXD3Q9UJU5 RNA5SP62-201ENST00000363457 110 ntBASIC0.53□□□□□ -2.32
FOXD3Q9UJU5 RNU6-1327P-201ENST00000365302 105 ntBASIC0.53□□□□□ -2.32
FOXD3Q9UJU5 MIR517B-201ENST00000385102 67 ntBASIC0.53□□□□□ -2.32
FOXD3Q9UJU5 CYP3A54P-201ENST00000566950 75 ntBASIC0.53□□□□□ -2.32
FOXD3Q9UJU5 MIR8087-201ENST00000612745 78 ntBASIC0.53□□□□□ -2.32
FOXD3Q9UJU5 RN7SL660P-201ENST00000614852 299 ntBASIC0.53□□□□□ -2.32
FOXD3Q9UJU5 SYCP2-202ENST00000371001 5479 ntAPPRIS P2 TSL 1 (best) BASIC0.53□□□□□ -2.33
FOXD3Q9UJU5 MIR330-201ENST00000362196 94 ntBASIC0.52□□□□□ -2.33
FOXD3Q9UJU5 RNU6-1036P-201ENST00000383959 104 ntBASIC0.52□□□□□ -2.33
FOXD3Q9UJU5 RNU6-815P-201ENST00000384080 113 ntBASIC0.52□□□□□ -2.33
FOXD3Q9UJU5 RNU6-127P-201ENST00000390897 107 ntBASIC0.52□□□□□ -2.33
FOXD3Q9UJU5 RNA5SP193-201ENST00000410353 107 ntBASIC0.52□□□□□ -2.33
FOXD3Q9UJU5 RNU7-174P-201ENST00000516248 59 ntBASIC0.52□□□□□ -2.33
FOXD3Q9UJU5 AC069113.3-201ENST00000521019 150 ntBASIC0.52□□□□□ -2.33
FOXD3Q9UJU5 AC243829.3-201ENST00000622177 108 ntBASIC0.52□□□□□ -2.33
FOXD3Q9UJU5 Y_RNA.68-201ENST00000362881 102 ntBASIC0.51□□□□□ -2.33
FOXD3Q9UJU5 RNU6-698P-201ENST00000363523 107 ntBASIC0.51□□□□□ -2.33
FOXD3Q9UJU5 Y_RNA.178-201ENST00000363832 102 ntBASIC0.51□□□□□ -2.33
FOXD3Q9UJU5 RNU6-34P-201ENST00000364874 107 ntBASIC0.51□□□□□ -2.33
FOXD3Q9UJU5 RNU6-669P-201ENST00000365575 107 ntBASIC0.51□□□□□ -2.33
FOXD3Q9UJU5 SCARNA21.1-201ENST00000515996 128 ntBASIC0.51□□□□□ -2.33
FOXD3Q9UJU5 MIR6773-201ENST00000612812 74 ntBASIC0.51□□□□□ -2.33
FOXD3Q9UJU5 MIR92A1-201ENST00000385233 78 ntBASIC0.5□□□□□ -2.33
FOXD3Q9UJU5 AL021921.1-201ENST00000442774 93 ntBASIC0.5□□□□□ -2.33
FOXD3Q9UJU5 SNORD115-25-201ENST00000362619 82 ntBASIC0.49□□□□□ -2.33
FOXD3Q9UJU5 RNA5SP257-201ENST00000363023 116 ntBASIC0.49□□□□□ -2.33
FOXD3Q9UJU5 AC110620.1-201ENST00000416042 228 ntBASIC0.48□□□□□ -2.33
FOXD3Q9UJU5 MIR548V-201ENST00000584165 80 ntBASIC0.48□□□□□ -2.33
FOXD3Q9UJU5 RNA5SP499-201ENST00000363982 119 ntBASIC0.47□□□□□ -2.33
FOXD3Q9UJU5 SNORA50A-201ENST00000384225 134 ntBASIC0.47□□□□□ -2.33
FOXD3Q9UJU5 SNORD113-2-201ENST00000391082 72 ntBASIC0.47□□□□□ -2.33
FOXD3Q9UJU5 RNU6-337P-201ENST00000391243 106 ntBASIC0.47□□□□□ -2.33
FOXD3Q9UJU5 RNA5SP98-201ENST00000363158 137 ntBASIC0.46□□□□□ -2.34
FOXD3Q9UJU5 MIR892B-201ENST00000401279 77 ntBASIC0.46□□□□□ -2.34
FOXD3Q9UJU5 AC108740.1-201ENST00000498629 225 ntBASIC0.46□□□□□ -2.34
FOXD3Q9UJU5 RNU6ATAC22P-201ENST00000516794 89 ntBASIC0.46□□□□□ -2.34
FOXD3Q9UJU5 MIR4315-1-201ENST00000636800 73 ntBASIC0.46□□□□□ -2.34
FOXD3Q9UJU5 MIR4315-2-201ENST00000640925 73 ntBASIC0.46□□□□□ -2.34
FOXD3Q9UJU5 KIF20B-201ENST00000260753 6306 ntAPPRIS P3 TSL 1 (best) BASIC0.46□□□□□ -2.34
FOXD3Q9UJU5 RNU6-502P-201ENST00000362419 108 ntBASIC0.45□□□□□ -2.34
FOXD3Q9UJU5 SNORA25.5-201ENST00000363782 126 ntBASIC0.45□□□□□ -2.34
FOXD3Q9UJU5 MIRLET7B-201ENST00000385140 83 ntBASIC0.45□□□□□ -2.34
FOXD3Q9UJU5 AC114737.2-201ENST00000421583 173 ntBASIC0.45□□□□□ -2.34
FOXD3Q9UJU5 RNA5SP470-201ENST00000516463 106 ntBASIC0.45□□□□□ -2.34
FOXD3Q9UJU5 AC090617.8-201ENST00000623339 167 ntBASIC0.45□□□□□ -2.34
FOXD3Q9UJU5 Y_RNA.433-201ENST00000384089 102 ntBASIC0.44□□□□□ -2.34
FOXD3Q9UJU5 MIR1255B2-201ENST00000408618 67 ntBASIC0.44□□□□□ -2.34
FOXD3Q9UJU5 MIR1197-201ENST00000408818 88 ntBASIC0.43□□□□□ -2.34
FOXD3Q9UJU5 RNU6-92P-201ENST00000605893 104 ntBASIC0.43□□□□□ -2.34
FOXD3Q9UJU5 VTRNA1-3-201ENST00000365645 89 ntBASIC0.42□□□□□ -2.34
FOXD3Q9UJU5 MIR630-201ENST00000384957 97 ntBASIC0.42□□□□□ -2.34
FOXD3Q9UJU5 TRAJ9-201ENST00000390528 61 ntAPPRIS P1 BASIC0.42□□□□□ -2.34
FOXD3Q9UJU5 RNU6-518P-201ENST00000516056 96 ntBASIC0.42□□□□□ -2.34
FOXD3Q9UJU5 MIR4743-201ENST00000584576 69 ntBASIC0.42□□□□□ -2.34
FOXD3Q9UJU5 MIR643-201ENST00000385267 97 ntBASIC0.41□□□□□ -2.34
FOXD3Q9UJU5 RNU7-154P-201ENST00000516194 62 ntBASIC0.41□□□□□ -2.34
FOXD3Q9UJU5 CR383656.4-201ENST00000546909 122 ntBASIC0.41□□□□□ -2.34
FOXD3Q9UJU5 Y_RNA.246-201ENST00000364495 108 ntBASIC0.4□□□□□ -2.35
FOXD3Q9UJU5 MIR9-2-201ENST00000384838 87 ntBASIC0.4□□□□□ -2.35
FOXD3Q9UJU5 U4.4-201ENST00000620626 117 ntBASIC0.4□□□□□ -2.35
FOXD3Q9UJU5 MIR148A-201ENST00000362215 68 ntBASIC0.39□□□□□ -2.35
FOXD3Q9UJU5 RNU6-940P-201ENST00000363433 104 ntBASIC0.39□□□□□ -2.35
FOXD3Q9UJU5 hsa-mir-3130-1.1-201ENST00000579223 75 ntBASIC0.39□□□□□ -2.35
FOXD3Q9UJU5 MIR610-201ENST00000385139 96 ntBASIC0.38□□□□□ -2.35
FOXD3Q9UJU5 SNORA62.5-201ENST00000516634 120 ntBASIC0.38□□□□□ -2.35
FOXD3Q9UJU5 AP000676.1-201ENST00000533307 52 ntBASIC0.38□□□□□ -2.35
FOXD3Q9UJU5 MIR6514-201ENST00000622549 70 ntBASIC0.38□□□□□ -2.35
FOXD3Q9UJU5 MIR519A2-201ENST00000384990 87 ntBASIC0.37□□□□□ -2.35
FOXD3Q9UJU5 RNA5SP134-201ENST00000516492 96 ntBASIC0.37□□□□□ -2.35
FOXD3Q9UJU5 SNORA42.1-201ENST00000363515 137 ntBASIC0.36□□□□□ -2.35
FOXD3Q9UJU5 MIR548H2-201ENST00000408874 88 ntBASIC0.36□□□□□ -2.35
FOXD3Q9UJU5 RNU6-180P-201ENST00000516697 61 ntBASIC0.36□□□□□ -2.35
FOXD3Q9UJU5 CEP290-203ENST00000547691 5968 ntTSL 1 (best) BASIC0.36□□□□□ -2.35
FOXD3Q9UJU5 RNA5SP192-201ENST00000364404 120 ntBASIC0.35□□□□□ -2.35
FOXD3Q9UJU5 MIR2909-201ENST00000617113 69 ntBASIC0.35□□□□□ -2.35
FOXD3Q9UJU5 RNA5SP163-201ENST00000410304 99 ntBASIC0.34□□□□□ -2.36
FOXD3Q9UJU5 RNU6-122P-201ENST00000516818 107 ntBASIC0.34□□□□□ -2.36
FOXD3Q9UJU5 AC023932.2-201ENST00000603176 175 ntBASIC0.34□□□□□ -2.36
FOXD3Q9UJU5 Y_RNA.74-201ENST00000362911 99 ntBASIC0.33□□□□□ -2.36
FOXD3Q9UJU5 RNA5SP63-201ENST00000391225 112 ntBASIC0.33□□□□□ -2.36
FOXD3Q9UJU5 AC008883.1-201ENST00000506562 193 ntTSL 3 BASIC0.33□□□□□ -2.36
FOXD3Q9UJU5 MIR4514-201ENST00000581410 57 ntBASIC0.33□□□□□ -2.36
FOXD3Q9UJU5 SNORD115-23-201ENST00000364461 82 ntBASIC0.32□□□□□ -2.36
FOXD3Q9UJU5 Y_RNA.325-201ENST00000365171 122 ntBASIC0.31□□□□□ -2.36
FOXD3Q9UJU5 RNU6ATAC29P-201ENST00000408088 125 ntBASIC0.31□□□□□ -2.36
FOXD3Q9UJU5 HOTAIRM1_3.1-201ENST00000619974 59 ntBASIC0.31□□□□□ -2.36
FOXD3Q9UJU5 SNORD60.1-201ENST00000362451 73 ntBASIC0.3□□□□□ -2.36
FOXD3Q9UJU5 AC104408.1-201ENST00000605241 170 ntBASIC0.3□□□□□ -2.36
Retrieved 100 of 98,524 protein–RNA pairs in 214.4 ms