Protein–RNA interactions for Protein: Q99801

NKX3-1, Homeobox protein Nkx-3.1, humanhuman

Predicted RBP Predictions only

Length 234 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NKX3-1Q99801 AC093726.3-201ENST00000637588 150 ntBASIC-0.51□□□□□ -2.49
NKX3-1Q99801 AL353795.2-201ENST00000431804 425 ntTSL 2 BASIC-0.52□□□□□ -2.49
NKX3-1Q99801 AC114755.3-201ENST00000481111 251 ntBASIC-0.52□□□□□ -2.49
NKX3-1Q99801 snoMBII-202.2-201ENST00000517263 86 ntBASIC-0.52□□□□□ -2.49
NKX3-1Q99801 Y_RNA.264-201ENST00000364665 102 ntBASIC-0.53□□□□□ -2.49
NKX3-1Q99801 SNORA15B-2-201ENST00000384058 135 ntBASIC-0.53□□□□□ -2.49
NKX3-1Q99801 SNORA15B-1-201ENST00000384334 135 ntBASIC-0.53□□□□□ -2.49
NKX3-1Q99801 Y_RNA.73-201ENST00000362910 113 ntBASIC-0.54□□□□□ -2.5
NKX3-1Q99801 Y_RNA.81-201ENST00000362997 102 ntBASIC-0.54□□□□□ -2.5
NKX3-1Q99801 RNU6-478P-201ENST00000363904 110 ntBASIC-0.54□□□□□ -2.5
NKX3-1Q99801 RNU6-681P-201ENST00000364012 104 ntBASIC-0.54□□□□□ -2.5
NKX3-1Q99801 SNORD115-23-201ENST00000364461 82 ntBASIC-0.54□□□□□ -2.5
NKX3-1Q99801 SNORA32.3-201ENST00000384772 121 ntBASIC-0.54□□□□□ -2.5
NKX3-1Q99801 MIR4432-201ENST00000581823 84 ntBASIC-0.54□□□□□ -2.5
NKX3-1Q99801 MIR6851-201ENST00000617060 67 ntBASIC-0.54□□□□□ -2.5
NKX3-1Q99801 RNU6-330P-201ENST00000363015 107 ntBASIC-0.55□□□□□ -2.5
NKX3-1Q99801 RNU6-752P-201ENST00000516376 102 ntBASIC-0.55□□□□□ -2.5
NKX3-1Q99801 MIR548AZ-201ENST00000616567 95 ntBASIC-0.55□□□□□ -2.5
NKX3-1Q99801 snoR1.1-201ENST00000628177 80 ntBASIC-0.55□□□□□ -2.5
NKX3-1Q99801 AC006160.2-201ENST00000637708 154 ntBASIC-0.55□□□□□ -2.5
NKX3-1Q99801 Y_RNA.250-201ENST00000364542 110 ntBASIC-0.56□□□□□ -2.5
NKX3-1Q99801 Z95118.1-201ENST00000421372 247 ntBASIC-0.56□□□□□ -2.5
NKX3-1Q99801 RNA5SP476-201ENST00000516613 103 ntBASIC-0.56□□□□□ -2.5
NKX3-1Q99801 AC108676.2-201ENST00000605225 163 ntBASIC-0.56□□□□□ -2.5
NKX3-1Q99801 MIR6854-201ENST00000614935 69 ntBASIC-0.56□□□□□ -2.5
NKX3-1Q99801 RNA5SP451-201ENST00000410588 110 ntBASIC-0.57□□□□□ -2.5
NKX3-1Q99801 RNU6-557P-201ENST00000516842 110 ntBASIC-0.57□□□□□ -2.5
NKX3-1Q99801 CYP3A54P-201ENST00000566950 75 ntBASIC-0.57□□□□□ -2.5
NKX3-1Q99801 IGLL4P-201ENST00000614590 133 ntBASIC-0.57□□□□□ -2.5
NKX3-1Q99801 RNU6-1162P-201ENST00000384443 104 ntBASIC-0.58□□□□□ -2.5
NKX3-1Q99801 RNU6-1184P-201ENST00000384588 108 ntBASIC-0.58□□□□□ -2.5
NKX3-1Q99801 MIR521-2-201ENST00000384818 87 ntBASIC-0.58□□□□□ -2.5
NKX3-1Q99801 MIR204-201ENST00000385200 110 ntBASIC-0.58□□□□□ -2.5
NKX3-1Q99801 MIR1255B2-201ENST00000408618 67 ntBASIC-0.58□□□□□ -2.5
NKX3-1Q99801 RNU6-284P-201ENST00000411105 106 ntBASIC-0.58□□□□□ -2.5
NKX3-1Q99801 MIR6739-201ENST00000622461 75 ntBASIC-0.58□□□□□ -2.5
NKX3-1Q99801 RNY1P1-201ENST00000364372 112 ntBASIC-0.59□□□□□ -2.5
NKX3-1Q99801 RNU6-686P-201ENST00000364839 107 ntBASIC-0.59□□□□□ -2.5
NKX3-1Q99801 Y_RNA.532-201ENST00000384590 113 ntBASIC-0.59□□□□□ -2.5
NKX3-1Q99801 RNU6-129P-201ENST00000391022 107 ntBASIC-0.59□□□□□ -2.5
NKX3-1Q99801 MIRLET7A1-201ENST00000362295 80 ntBASIC-0.6□□□□□ -2.51
NKX3-1Q99801 Y_RNA.219-201ENST00000364232 113 ntBASIC-0.61□□□□□ -2.51
NKX3-1Q99801 RNU6-303P-201ENST00000517091 106 ntBASIC-0.61□□□□□ -2.51
NKX3-1Q99801 SNORD75.1-201ENST00000408373 60 ntBASIC-0.62□□□□□ -2.51
NKX3-1Q99801 RNA5SP25-201ENST00000410815 110 ntBASIC-0.62□□□□□ -2.51
NKX3-1Q99801 HAR1A.1-201ENST00000459583 118 ntBASIC-0.62□□□□□ -2.51
NKX3-1Q99801 MIR5588-201ENST00000581890 63 ntBASIC-0.62□□□□□ -2.51
NKX3-1Q99801 MIR4436A-201ENST00000585278 85 ntBASIC-0.62□□□□□ -2.51
NKX3-1Q99801 AL353803.5-201ENST00000599815 141 ntBASIC-0.62□□□□□ -2.51
NKX3-1Q99801 SNORD95.1-201ENST00000364099 68 ntBASIC-0.63□□□□□ -2.51
NKX3-1Q99801 RNU6-979P-201ENST00000383896 107 ntBASIC-0.63□□□□□ -2.51
NKX3-1Q99801 AC074348.1-201ENST00000426503 132 ntBASIC-0.63□□□□□ -2.51
NKX3-1Q99801 RPS29P8-201ENST00000445109 171 ntBASIC-0.63□□□□□ -2.51
NKX3-1Q99801 MIR4484-201ENST00000582855 83 ntBASIC-0.63□□□□□ -2.51
NKX3-1Q99801 MIR518B-201ENST00000385127 83 ntBASIC-0.64□□□□□ -2.51
NKX3-1Q99801 SNORA3B-201ENST00000391305 131 ntBASIC-0.64□□□□□ -2.51
NKX3-1Q99801 Y_RNA.607-201ENST00000410597 98 ntBASIC-0.64□□□□□ -2.51
NKX3-1Q99801 SNORD22.1-201ENST00000516331 125 ntBASIC-0.64□□□□□ -2.51
NKX3-1Q99801 Y_RNA.694-201ENST00000516677 117 ntBASIC-0.64□□□□□ -2.51
NKX3-1Q99801 RNU6-656P-201ENST00000516785 107 ntBASIC-0.64□□□□□ -2.51
NKX3-1Q99801 MIR4464-201ENST00000580818 92 ntBASIC-0.64□□□□□ -2.51
NKX3-1Q99801 MIR3675-201ENST00000583661 73 ntBASIC-0.64□□□□□ -2.51
NKX3-1Q99801 Y_RNA.426-201ENST00000384068 113 ntBASIC-0.65□□□□□ -2.51
NKX3-1Q99801 MIR224-201ENST00000384889 81 ntBASIC-0.65□□□□□ -2.51
NKX3-1Q99801 RNU6-721P-201ENST00000410155 105 ntBASIC-0.65□□□□□ -2.51
NKX3-1Q99801 MIR5582-201ENST00000579697 68 ntBASIC-0.65□□□□□ -2.51
NKX3-1Q99801 MIR494-201ENST00000349529 81 ntBASIC-0.66□□□□□ -2.52
NKX3-1Q99801 RNU6-294P-201ENST00000364999 102 ntBASIC-0.66□□□□□ -2.52
NKX3-1Q99801 MIR124-2-201ENST00000385081 109 ntBASIC-0.66□□□□□ -2.52
NKX3-1Q99801 MIR3179-1-201ENST00000578940 84 ntBASIC-0.66□□□□□ -2.52
NKX3-1Q99801 MIR3179-2-201ENST00000579107 84 ntBASIC-0.66□□□□□ -2.52
NKX3-1Q99801 MIR3179-3-201ENST00000579566 84 ntBASIC-0.66□□□□□ -2.52
NKX3-1Q99801 MIR3179-4-201ENST00000617599 84 ntBASIC-0.66□□□□□ -2.52
NKX3-1Q99801 Y_RNA.316-201ENST00000365118 111 ntBASIC-0.67□□□□□ -2.52
NKX3-1Q99801 SNORA8.1-201ENST00000384250 140 ntBASIC-0.67□□□□□ -2.52
NKX3-1Q99801 RNU6-30P-201ENST00000384561 107 ntBASIC-0.67□□□□□ -2.52
NKX3-1Q99801 RNU6ATAC29P-201ENST00000408088 125 ntBASIC-0.67□□□□□ -2.52
NKX3-1Q99801 AC022137.1-201ENST00000483735 151 ntBASIC-0.67□□□□□ -2.52
NKX3-1Q99801 RNA5SP470-201ENST00000516463 106 ntBASIC-0.67□□□□□ -2.52
NKX3-1Q99801 MIR6888-201ENST00000621977 67 ntBASIC-0.67□□□□□ -2.52
NKX3-1Q99801 RNU6-645P-201ENST00000364649 106 ntBASIC-0.68□□□□□ -2.52
NKX3-1Q99801 MIR519A2-201ENST00000384990 87 ntBASIC-0.68□□□□□ -2.52
NKX3-1Q99801 SNORD114-14-201ENST00000362723 75 ntBASIC-0.69□□□□□ -2.52
NKX3-1Q99801 SNORA62.4-201ENST00000365504 151 ntBASIC-0.69□□□□□ -2.52
NKX3-1Q99801 RNU6ATAC17P-201ENST00000516074 71 ntBASIC-0.69□□□□□ -2.52
NKX3-1Q99801 RNU6-881P-201ENST00000516813 102 ntBASIC-0.69□□□□□ -2.52
NKX3-1Q99801 RNU6-604P-201ENST00000390917 100 ntBASIC-0.7□□□□□ -2.52
NKX3-1Q99801 RNU7-171P-201ENST00000459581 62 ntBASIC-0.7□□□□□ -2.52
NKX3-1Q99801 RNU6-518P-201ENST00000516056 96 ntBASIC-0.7□□□□□ -2.52
NKX3-1Q99801 AL445584.3-201ENST00000617173 78 ntBASIC-0.7□□□□□ -2.52
NKX3-1Q99801 SNORD45.1-201ENST00000363181 77 ntBASIC-0.71□□□□□ -2.52
NKX3-1Q99801 Y_RNA.369-201ENST00000365568 117 ntBASIC-0.71□□□□□ -2.52
NKX3-1Q99801 AP000533.3-201ENST00000447704 118 ntBASIC-0.71□□□□□ -2.52
NKX3-1Q99801 SNORA13-201ENST00000458790 133 ntBASIC-0.71□□□□□ -2.52
NKX3-1Q99801 snoU13.19-201ENST00000459148 104 ntBASIC-0.71□□□□□ -2.52
NKX3-1Q99801 AC021146.6-201ENST00000514659 117 ntBASIC-0.71□□□□□ -2.52
NKX3-1Q99801 RNU6-982P-201ENST00000516216 102 ntBASIC-0.71□□□□□ -2.52
NKX3-1Q99801 U2.7-201ENST00000619197 100 ntBASIC-0.71□□□□□ -2.52
NKX3-1Q99801 SNORD74.6-201ENST00000364796 70 ntBASIC-0.72□□□□□ -2.52
NKX3-1Q99801 MIR450A2-201ENST00000385022 100 ntBASIC-0.72□□□□□ -2.52
Retrieved 100 of 98,524 protein–RNA pairs in 71.3 ms