Protein–RNA interactions for Protein: Q53GS9

USP39, U4/U6.U5 tri-snRNP-associated protein 2, humanhuman

Known RBP Predictions only

Length 565 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP39Q53GS9 MIR4677-201ENST00000584153 80 ntBASIC0.64□□□□□ -2.31
USP39Q53GS9 AC243829.6-201ENST00000612652 106 ntBASIC0.64□□□□□ -2.31
USP39Q53GS9 AC243829.3-201ENST00000622177 108 ntBASIC0.64□□□□□ -2.31
USP39Q53GS9 U6.96-201ENST00000636425 70 ntBASIC0.64□□□□□ -2.31
USP39Q53GS9 Y_RNA.30-201ENST00000362572 97 ntBASIC0.63□□□□□ -2.31
USP39Q53GS9 RNU6-337P-201ENST00000391243 106 ntBASIC0.63□□□□□ -2.31
USP39Q53GS9 RNU6-848P-201ENST00000515948 107 ntBASIC0.63□□□□□ -2.31
USP39Q53GS9 RNU6-617P-201ENST00000516147 107 ntBASIC0.63□□□□□ -2.31
USP39Q53GS9 RNU6-473P-201ENST00000516164 107 ntBASIC0.63□□□□□ -2.31
USP39Q53GS9 RNU6-1049P-201ENST00000516414 107 ntBASIC0.63□□□□□ -2.31
USP39Q53GS9 MIR5087-201ENST00000635826 76 ntBASIC0.63□□□□□ -2.31
USP39Q53GS9 Y_RNA.115-201ENST00000363272 98 ntBASIC0.62□□□□□ -2.31
USP39Q53GS9 Y_RNA.236-201ENST00000364427 111 ntBASIC0.62□□□□□ -2.31
USP39Q53GS9 SNORD71-201ENST00000411292 86 ntBASIC0.62□□□□□ -2.31
USP39Q53GS9 MIR3938-201ENST00000582157 103 ntBASIC0.62□□□□□ -2.31
USP39Q53GS9 MIR548AD-201ENST00000584780 82 ntBASIC0.62□□□□□ -2.31
USP39Q53GS9 U7.6-201ENST00000610841 64 ntBASIC0.62□□□□□ -2.31
USP39Q53GS9 ZBTB41-201ENST00000367405 8478 ntAPPRIS P1 TSL 1 (best) BASIC0.62□□□□□ -2.31
USP39Q53GS9 SNORD114-29-201ENST00000364819 70 ntBASIC0.61□□□□□ -2.31
USP39Q53GS9 Y_RNA.325-201ENST00000365171 122 ntBASIC0.61□□□□□ -2.31
USP39Q53GS9 RNU6-1246P-201ENST00000391064 107 ntBASIC0.61□□□□□ -2.31
USP39Q53GS9 SNORD113-2-201ENST00000391082 72 ntBASIC0.61□□□□□ -2.31
USP39Q53GS9 RNA5SP121-201ENST00000516537 101 ntBASIC0.61□□□□□ -2.31
USP39Q53GS9 Y_RNA.246-201ENST00000364495 108 ntBASIC0.6□□□□□ -2.31
USP39Q53GS9 RNA5SP330-201ENST00000517096 96 ntBASIC0.6□□□□□ -2.31
USP39Q53GS9 ZNF518A-209ENST00000614149 7911 ntAPPRIS P1 TSL 5 BASIC0.59□□□□□ -2.31
USP39Q53GS9 SNORA41B-201ENST00000384785 128 ntBASIC0.59□□□□□ -2.31
USP39Q53GS9 MIR760-201ENST00000390220 80 ntBASIC0.59□□□□□ -2.31
USP39Q53GS9 MIR3925-201ENST00000584674 77 ntBASIC0.59□□□□□ -2.31
USP39Q53GS9 MIR8087-201ENST00000612745 78 ntBASIC0.59□□□□□ -2.31
USP39Q53GS9 RN7SL660P-201ENST00000614852 299 ntBASIC0.59□□□□□ -2.31
USP39Q53GS9 SNORA9.1-201ENST00000362412 131 ntBASIC0.58□□□□□ -2.32
USP39Q53GS9 SNORD44.1-201ENST00000363202 61 ntBASIC0.58□□□□□ -2.32
USP39Q53GS9 MIR519A2-201ENST00000384990 87 ntBASIC0.58□□□□□ -2.32
USP39Q53GS9 MIR1255B2-201ENST00000408618 67 ntBASIC0.58□□□□□ -2.32
USP39Q53GS9 RNU6-518P-201ENST00000516056 96 ntBASIC0.58□□□□□ -2.32
USP39Q53GS9 MIR6773-201ENST00000612812 74 ntBASIC0.58□□□□□ -2.32
USP39Q53GS9 uc_338.17-201ENST00000619633 179 ntBASIC0.58□□□□□ -2.32
USP39Q53GS9 RNA5SP128-201ENST00000365305 116 ntBASIC0.57□□□□□ -2.32
USP39Q53GS9 RNU6-614P-201ENST00000384369 107 ntBASIC0.57□□□□□ -2.32
USP39Q53GS9 AL021921.1-201ENST00000442774 93 ntBASIC0.57□□□□□ -2.32
USP39Q53GS9 SNORD2-201ENST00000459163 69 ntBASIC0.57□□□□□ -2.32
USP39Q53GS9 U6.59-201ENST00000615686 107 ntBASIC0.57□□□□□ -2.32
USP39Q53GS9 MIR330-201ENST00000362196 94 ntBASIC0.56□□□□□ -2.32
USP39Q53GS9 RNU6-502P-201ENST00000362419 108 ntBASIC0.56□□□□□ -2.32
USP39Q53GS9 SNORD113-4-201ENST00000364802 75 ntBASIC0.56□□□□□ -2.32
USP39Q53GS9 RNU6-945P-201ENST00000383947 107 ntBASIC0.56□□□□□ -2.32
USP39Q53GS9 MIR92A1-201ENST00000385233 78 ntBASIC0.56□□□□□ -2.32
USP39Q53GS9 MIR876-201ENST00000401147 81 ntBASIC0.56□□□□□ -2.32
USP39Q53GS9 MIR548AG1-201ENST00000579932 66 ntBASIC0.56□□□□□ -2.32
USP39Q53GS9 AC084368.1-201ENST00000620935 65 ntBASIC0.56□□□□□ -2.32
USP39Q53GS9 MIR499B-201ENST00000636498 73 ntBASIC0.56□□□□□ -2.32
USP39Q53GS9 RNU6-1036P-201ENST00000383959 104 ntBASIC0.55□□□□□ -2.32
USP39Q53GS9 C18orf54-201ENST00000300091 5237 ntAPPRIS P1 TSL 1 (best) BASIC0.55□□□□□ -2.32
USP39Q53GS9 Y_RNA.74-201ENST00000362911 99 ntBASIC0.54□□□□□ -2.32
USP39Q53GS9 RNA5SP499-201ENST00000363982 119 ntBASIC0.54□□□□□ -2.32
USP39Q53GS9 MIRLET7B-201ENST00000385140 83 ntBASIC0.54□□□□□ -2.32
USP39Q53GS9 RNU6-863P-201ENST00000515989 104 ntBASIC0.54□□□□□ -2.32
USP39Q53GS9 LINC00345-201ENST00000443679 285 ntTSL 5 BASIC0.53□□□□□ -2.32
USP39Q53GS9 SNORA68.3-201ENST00000515906 83 ntBASIC0.53□□□□□ -2.32
USP39Q53GS9 MIR103A1-201ENST00000362165 78 ntBASIC0.52□□□□□ -2.33
USP39Q53GS9 Y_RNA.282-201ENST00000364793 102 ntBASIC0.52□□□□□ -2.33
USP39Q53GS9 RNU6-141P-201ENST00000410499 105 ntBASIC0.52□□□□□ -2.33
USP39Q53GS9 AC114737.2-201ENST00000421583 173 ntBASIC0.52□□□□□ -2.33
USP39Q53GS9 SNORD115-25-201ENST00000362619 82 ntBASIC0.51□□□□□ -2.33
USP39Q53GS9 SNORD116-16-201ENST00000384533 92 ntBASIC0.5□□□□□ -2.33
USP39Q53GS9 MIR106A-201ENST00000384870 81 ntBASIC0.5□□□□□ -2.33
USP39Q53GS9 RNU7-129P-201ENST00000516128 62 ntBASIC0.5□□□□□ -2.33
USP39Q53GS9 RNU7-154P-201ENST00000516194 62 ntBASIC0.5□□□□□ -2.33
USP39Q53GS9 RNU6-782P-201ENST00000516852 104 ntBASIC0.5□□□□□ -2.33
USP39Q53GS9 SCARNA11.2-201ENST00000517183 154 ntBASIC0.5□□□□□ -2.33
USP39Q53GS9 CCDC7-215ENST00000639629 4158 ntAPPRIS ALT2 TSL 5 BASIC0.49□□□□□ -2.33
USP39Q53GS9 MIR1197-201ENST00000408818 88 ntBASIC0.49□□□□□ -2.33
USP39Q53GS9 SAMD9-203ENST00000620985 6754 ntAPPRIS P1 TSL 2 BASIC0.48□□□□□ -2.33
USP39Q53GS9 MIRLET7D-201ENST00000362263 87 ntBASIC0.48□□□□□ -2.33
USP39Q53GS9 RNA5SP257-201ENST00000363023 116 ntBASIC0.48□□□□□ -2.33
USP39Q53GS9 VTRNA1-3-201ENST00000365645 89 ntBASIC0.48□□□□□ -2.33
USP39Q53GS9 RNU6ATAC29P-201ENST00000408088 125 ntBASIC0.48□□□□□ -2.33
USP39Q53GS9 RNA5SP470-201ENST00000516463 106 ntBASIC0.48□□□□□ -2.33
USP39Q53GS9 MIR7978-201ENST00000636158 59 ntBASIC0.48□□□□□ -2.33
USP39Q53GS9 Y_RNA.68-201ENST00000362881 102 ntBASIC0.46□□□□□ -2.34
USP39Q53GS9 SNORD115-23-201ENST00000364461 82 ntBASIC0.46□□□□□ -2.34
USP39Q53GS9 RNU6-815P-201ENST00000384080 113 ntBASIC0.46□□□□□ -2.34
USP39Q53GS9 SNORA50A-201ENST00000384225 134 ntBASIC0.46□□□□□ -2.34
USP39Q53GS9 MIR527-201ENST00000385244 85 ntBASIC0.46□□□□□ -2.34
USP39Q53GS9 RNU6-127P-201ENST00000390897 107 ntBASIC0.46□□□□□ -2.34
USP39Q53GS9 RNU6-231P-201ENST00000517122 103 ntBASIC0.46□□□□□ -2.34
USP39Q53GS9 RNU6-520P-201ENST00000384717 104 ntBASIC0.45□□□□□ -2.34
USP39Q53GS9 RNU6-1312P-201ENST00000362425 108 ntBASIC0.44□□□□□ -2.34
USP39Q53GS9 SNORA62.5-201ENST00000516634 120 ntBASIC0.44□□□□□ -2.34
USP39Q53GS9 Y_RNA.109-201ENST00000363215 102 ntBASIC0.43□□□□□ -2.34
USP39Q53GS9 Y_RNA.178-201ENST00000363832 102 ntBASIC0.43□□□□□ -2.34
USP39Q53GS9 MIR548H2-201ENST00000408874 88 ntBASIC0.43□□□□□ -2.34
USP39Q53GS9 AP000676.1-201ENST00000533307 52 ntBASIC0.43□□□□□ -2.34
USP39Q53GS9 AL353803.5-201ENST00000599815 141 ntBASIC0.42□□□□□ -2.34
USP39Q53GS9 HOTAIRM1_3.1-201ENST00000619974 59 ntBASIC0.42□□□□□ -2.34
USP39Q53GS9 CEP290-203ENST00000547691 5968 ntTSL 1 (best) BASIC0.41□□□□□ -2.34
USP39Q53GS9 RNA5SP62-201ENST00000363457 110 ntBASIC0.41□□□□□ -2.34
USP39Q53GS9 RNU6-246P-201ENST00000384702 107 ntBASIC0.41□□□□□ -2.34
USP39Q53GS9 AC069113.3-201ENST00000521019 150 ntBASIC0.41□□□□□ -2.34
Retrieved 100 of 98,524 protein–RNA pairs in 242.2 ms