Protein–RNA interactions for Protein: Q4G0X9

CCDC40, Coiled-coil domain-containing protein 40, humanhuman

Predictions only

Length 1,142 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC40Q4G0X9 Y_RNA.457-201ENST00000384237 111 ntBASIC-1.5□□□□□ -2.65
CCDC40Q4G0X9 SNORA26.4-201ENST00000391188 123 ntBASIC-1.5□□□□□ -2.65
CCDC40Q4G0X9 RNU6-340P-201ENST00000364005 107 ntBASIC-1.51□□□□□ -2.65
CCDC40Q4G0X9 MIR519A2-201ENST00000384990 87 ntBASIC-1.51□□□□□ -2.65
CCDC40Q4G0X9 snosnR66.1-201ENST00000391095 99 ntBASIC-1.51□□□□□ -2.65
CCDC40Q4G0X9 Y_RNA.613-201ENST00000410726 97 ntBASIC-1.51□□□□□ -2.65
CCDC40Q4G0X9 AL021921.1-201ENST00000442774 93 ntBASIC-1.52□□□□□ -2.65
CCDC40Q4G0X9 RNU7-153P-201ENST00000516455 62 ntBASIC-1.52□□□□□ -2.65
CCDC40Q4G0X9 TRAJ37-201ENST00000612375 65 ntAPPRIS P1 BASIC-1.52□□□□□ -2.65
CCDC40Q4G0X9 U7.3-201ENST00000616123 62 ntBASIC-1.52□□□□□ -2.65
CCDC40Q4G0X9 RNA5SP331-201ENST00000364986 107 ntBASIC-1.53□□□□□ -2.65
CCDC40Q4G0X9 Y_RNA.190-201ENST00000363964 101 ntBASIC-1.54□□□□□ -2.66
CCDC40Q4G0X9 RNU6-704P-201ENST00000364162 103 ntBASIC-1.54□□□□□ -2.66
CCDC40Q4G0X9 RNU6-518P-201ENST00000516056 96 ntBASIC-1.54□□□□□ -2.66
CCDC40Q4G0X9 SNORD63.1-201ENST00000516178 80 ntBASIC-1.54□□□□□ -2.66
CCDC40Q4G0X9 RNU6-706P-201ENST00000517229 104 ntBASIC-1.54□□□□□ -2.66
CCDC40Q4G0X9 RNU6-1233P-201ENST00000362922 102 ntBASIC-1.55□□□□□ -2.66
CCDC40Q4G0X9 Y_RNA.264-201ENST00000364665 102 ntBASIC-1.55□□□□□ -2.66
CCDC40Q4G0X9 Y_RNA.468-201ENST00000384298 102 ntBASIC-1.55□□□□□ -2.66
CCDC40Q4G0X9 RNU6-162P-201ENST00000516228 103 ntBASIC-1.55□□□□□ -2.66
CCDC40Q4G0X9 Y_RNA.703-201ENST00000516846 111 ntBASIC-1.55□□□□□ -2.66
CCDC40Q4G0X9 RNU6-1216P-201ENST00000362590 107 ntBASIC-1.56□□□□□ -2.66
CCDC40Q4G0X9 RNU6-106P-201ENST00000384405 107 ntBASIC-1.56□□□□□ -2.66
CCDC40Q4G0X9 MIR29B1-201ENST00000385015 81 ntBASIC-1.56□□□□□ -2.66
CCDC40Q4G0X9 MIR519C-201ENST00000385053 87 ntBASIC-1.56□□□□□ -2.66
CCDC40Q4G0X9 SNORD77.2-201ENST00000391045 68 ntBASIC-1.56□□□□□ -2.66
CCDC40Q4G0X9 RNU6-554P-201ENST00000410466 106 ntBASIC-1.57□□□□□ -2.66
CCDC40Q4G0X9 RNU6-109P-201ENST00000516364 107 ntBASIC-1.57□□□□□ -2.66
CCDC40Q4G0X9 RNU6-184P-201ENST00000516514 107 ntBASIC-1.57□□□□□ -2.66
CCDC40Q4G0X9 FAS-AS1.1-201ENST00000615327 126 ntBASIC-1.57□□□□□ -2.66
CCDC40Q4G0X9 Y_RNA.365-201ENST00000365537 102 ntBASIC-1.58□□□□□ -2.66
CCDC40Q4G0X9 RNU6-746P-201ENST00000384112 109 ntBASIC-1.58□□□□□ -2.66
CCDC40Q4G0X9 RNU6-1064P-201ENST00000410626 104 ntBASIC-1.58□□□□□ -2.66
CCDC40Q4G0X9 AC008267.6-201ENST00000441664 139 ntBASIC-1.58□□□□□ -2.66
CCDC40Q4G0X9 hsa-mir-3607.1-201ENST00000637229 79 ntBASIC-1.58□□□□□ -2.66
CCDC40Q4G0X9 TRAJ61-201ENST00000390479 60 ntAPPRIS P1 BASIC-1.59□□□□□ -2.66
CCDC40Q4G0X9 MIR3133-201ENST00000583157 78 ntBASIC-1.59□□□□□ -2.66
CCDC40Q4G0X9 ULK3-223ENST00000631115 126 ntTSL 5 BASIC-1.59□□□□□ -2.66
CCDC40Q4G0X9 Y_RNA.261-201ENST00000364631 102 ntBASIC-1.6□□□□□ -2.67
CCDC40Q4G0X9 RNU6-959P-201ENST00000384671 107 ntBASIC-1.6□□□□□ -2.67
CCDC40Q4G0X9 SNX3P1X-201ENST00000414887 175 ntBASIC-1.6□□□□□ -2.67
CCDC40Q4G0X9 AL035461.1-201ENST00000421490 332 ntBASIC-1.6□□□□□ -2.67
CCDC40Q4G0X9 MTATP8P2-201ENST00000435212 202 ntBASIC-1.6□□□□□ -2.67
CCDC40Q4G0X9 RNU6-158P-201ENST00000517104 100 ntBASIC-1.6□□□□□ -2.67
CCDC40Q4G0X9 AL627230.5-201ENST00000619807 58 ntBASIC-1.6□□□□□ -2.67
CCDC40Q4G0X9 RNU6-226P-201ENST00000363778 107 ntBASIC-1.61□□□□□ -2.67
CCDC40Q4G0X9 Y_RNA.348-201ENST00000365403 103 ntBASIC-1.61□□□□□ -2.67
CCDC40Q4G0X9 Y_RNA.544-201ENST00000384650 113 ntBASIC-1.61□□□□□ -2.67
CCDC40Q4G0X9 MIR8485-201ENST00000401372 91 ntBASIC-1.61□□□□□ -2.67
CCDC40Q4G0X9 AL353691.2-201ENST00000443795 59 ntBASIC-1.61□□□□□ -2.67
CCDC40Q4G0X9 AC132825.6-201ENST00000638861 357 ntBASIC-1.61□□□□□ -2.67
CCDC40Q4G0X9 RNU6-766P-201ENST00000362478 107 ntBASIC-1.62□□□□□ -2.67
CCDC40Q4G0X9 SNORD115-27-201ENST00000364430 82 ntBASIC-1.62□□□□□ -2.67
CCDC40Q4G0X9 AL031386.1-201ENST00000411940 142 ntTSL 5 BASIC-1.62□□□□□ -2.67
CCDC40Q4G0X9 RNU6-479P-201ENST00000516348 105 ntBASIC-1.62□□□□□ -2.67
CCDC40Q4G0X9 RNU6-656P-201ENST00000516785 107 ntBASIC-1.62□□□□□ -2.67
CCDC40Q4G0X9 MIR198-201ENST00000637333 62 ntBASIC-1.62□□□□□ -2.67
CCDC40Q4G0X9 SNORD115-37-201ENST00000363768 82 ntBASIC-1.63□□□□□ -2.67
CCDC40Q4G0X9 HLA-S-202ENST00000425174 53 ntBASIC-1.63□□□□□ -2.67
CCDC40Q4G0X9 MIR6818-201ENST00000621576 65 ntBASIC-1.63□□□□□ -2.67
CCDC40Q4G0X9 RNU6-633P-201ENST00000362612 103 ntBASIC-1.64□□□□□ -2.67
CCDC40Q4G0X9 SNORD115-22-201ENST00000364456 82 ntBASIC-1.64□□□□□ -2.67
CCDC40Q4G0X9 RNU6-209P-201ENST00000384118 107 ntBASIC-1.64□□□□□ -2.67
CCDC40Q4G0X9 RNU4-61P-201ENST00000411243 107 ntBASIC-1.64□□□□□ -2.67
CCDC40Q4G0X9 RNU6-807P-201ENST00000516805 107 ntBASIC-1.64□□□□□ -2.67
CCDC40Q4G0X9 MIR2052-201ENST00000636055 55 ntBASIC-1.64□□□□□ -2.67
CCDC40Q4G0X9 RNU6-834P-201ENST00000362367 110 ntBASIC-1.65□□□□□ -2.67
CCDC40Q4G0X9 SNORA19-201ENST00000384737 128 ntBASIC-1.65□□□□□ -2.67
CCDC40Q4G0X9 LEKR1-212ENST00000640869 237 ntTSL 5 BASIC-1.65□□□□□ -2.67
CCDC40Q4G0X9 Y_RNA.290-201ENST00000364879 114 ntBASIC-1.66□□□□□ -2.68
CCDC40Q4G0X9 RNU7-134P-201ENST00000458997 64 ntBASIC-1.66□□□□□ -2.68
CCDC40Q4G0X9 RNU6-1238P-201ENST00000517215 102 ntBASIC-1.66□□□□□ -2.68
CCDC40Q4G0X9 U2.7-201ENST00000619197 100 ntBASIC-1.66□□□□□ -2.68
CCDC40Q4G0X9 RNU6-81P-201ENST00000365608 104 ntBASIC-1.67□□□□□ -2.68
CCDC40Q4G0X9 RNU6-576P-201ENST00000390854 102 ntBASIC-1.67□□□□□ -2.68
CCDC40Q4G0X9 RNU6-1108P-201ENST00000516308 104 ntBASIC-1.67□□□□□ -2.68
CCDC40Q4G0X9 AC138207.3-201ENST00000585289 166 ntBASIC-1.67□□□□□ -2.68
CCDC40Q4G0X9 RNU6-624P-201ENST00000363411 107 ntBASIC-1.68□□□□□ -2.68
CCDC40Q4G0X9 RNU6-1056P-201ENST00000383996 107 ntBASIC-1.68□□□□□ -2.68
CCDC40Q4G0X9 RNU6-732P-201ENST00000516033 103 ntBASIC-1.68□□□□□ -2.68
CCDC40Q4G0X9 RNU6-589P-201ENST00000516485 107 ntBASIC-1.68□□□□□ -2.68
CCDC40Q4G0X9 MIR6129-201ENST00000616087 109 ntBASIC-1.68□□□□□ -2.68
CCDC40Q4G0X9 AC093729.1-201ENST00000513074 128 ntBASIC-1.69□□□□□ -2.68
CCDC40Q4G0X9 RNA5SP180-201ENST00000516181 101 ntBASIC-1.69□□□□□ -2.68
CCDC40Q4G0X9 Y_RNA.181-201ENST00000363872 101 ntBASIC-1.7□□□□□ -2.68
CCDC40Q4G0X9 MIR601-201ENST00000385256 79 ntBASIC-1.7□□□□□ -2.68
CCDC40Q4G0X9 MIR5591-201ENST00000578248 65 ntBASIC-1.7□□□□□ -2.68
CCDC40Q4G0X9 MIR4668-201ENST00000582284 70 ntBASIC-1.7□□□□□ -2.68
CCDC40Q4G0X9 AL365222.1-201ENST00000614661 98 ntBASIC-1.7□□□□□ -2.68
CCDC40Q4G0X9 RNU6-774P-201ENST00000363238 107 ntBASIC-1.71□□□□□ -2.68
CCDC40Q4G0X9 RNU6-645P-201ENST00000364649 106 ntBASIC-1.71□□□□□ -2.68
CCDC40Q4G0X9 AL353795.2-201ENST00000431804 425 ntTSL 2 BASIC-1.71□□□□□ -2.68
CCDC40Q4G0X9 RNA5SP26-201ENST00000362406 119 ntBASIC-1.72□□□□□ -2.68
CCDC40Q4G0X9 U7.5-201ENST00000517224 61 ntBASIC-1.72□□□□□ -2.68
CCDC40Q4G0X9 RNU6-246P-201ENST00000384702 107 ntBASIC-1.73□□□□□ -2.69
CCDC40Q4G0X9 RNU6-557P-201ENST00000516842 110 ntBASIC-1.73□□□□□ -2.69
CCDC40Q4G0X9 MIR548AG1-201ENST00000579932 66 ntBASIC-1.73□□□□□ -2.69
CCDC40Q4G0X9 MIR4490-201ENST00000582647 84 ntBASIC-1.73□□□□□ -2.69
CCDC40Q4G0X9 MIR1246-201ENST00000636535 73 ntBASIC-1.73□□□□□ -2.69
CCDC40Q4G0X9 MIR507-201ENST00000385234 94 ntBASIC-1.74□□□□□ -2.69
Retrieved 100 of 98,524 protein–RNA pairs in 212 ms