Protein–RNA interactions for Protein: Q3V6T2

CCDC88A, Girdin, humanhuman

Predictions only

Length 1,871 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88AQ3V6T2 RNU6-887P-201ENST00000410660 100 ntBASIC-2.05□□□□□ -2.74
CCDC88AQ3V6T2 MIR4801-201ENST00000582704 82 ntBASIC-2.05□□□□□ -2.74
CCDC88AQ3V6T2 SNORD58C-201ENST00000365223 64 ntBASIC-2.05□□□□□ -2.74
CCDC88AQ3V6T2 AL117187.1-201ENST00000555482 181 ntBASIC-2.05□□□□□ -2.74
CCDC88AQ3V6T2 MIR5009-201ENST00000578736 100 ntBASIC-2.05□□□□□ -2.74
CCDC88AQ3V6T2 Y_RNA.240-201ENST00000364469 95 ntBASIC-2.06□□□□□ -2.74
CCDC88AQ3V6T2 Y_RNA.478-201ENST00000384358 107 ntBASIC-2.06□□□□□ -2.74
CCDC88AQ3V6T2 RNU6-1113P-201ENST00000384348 107 ntBASIC-2.07□□□□□ -2.74
CCDC88AQ3V6T2 Y_RNA.564-201ENST00000384708 106 ntBASIC-2.07□□□□□ -2.74
CCDC88AQ3V6T2 SNORD116-10-201ENST00000363791 102 ntBASIC-2.07□□□□□ -2.74
CCDC88AQ3V6T2 Y_RNA.680-201ENST00000516441 93 ntBASIC-2.07□□□□□ -2.74
CCDC88AQ3V6T2 MIR4796-201ENST00000580742 81 ntBASIC-2.07□□□□□ -2.74
CCDC88AQ3V6T2 MIR4777-201ENST00000583710 86 ntBASIC-2.07□□□□□ -2.74
CCDC88AQ3V6T2 AL035461.1-201ENST00000421490 332 ntBASIC-2.08□□□□□ -2.74
CCDC88AQ3V6T2 Y_RNA.705-201ENST00000516862 110 ntBASIC-2.08□□□□□ -2.74
CCDC88AQ3V6T2 AC044792.1-201ENST00000593294 196 ntBASIC-2.08□□□□□ -2.74
CCDC88AQ3V6T2 Y_RNA.420-201ENST00000384043 110 ntBASIC-2.09□□□□□ -2.74
CCDC88AQ3V6T2 Y_RNA.580-201ENST00000391004 95 ntBASIC-2.09□□□□□ -2.74
CCDC88AQ3V6T2 RNU6-861P-201ENST00000516745 106 ntBASIC-2.09□□□□□ -2.74
CCDC88AQ3V6T2 RNU6-624P-201ENST00000363411 107 ntBASIC-2.09□□□□□ -2.74
CCDC88AQ3V6T2 MIR1236-201ENST00000408340 102 ntBASIC-2.09□□□□□ -2.74
CCDC88AQ3V6T2 RNU6-537P-201ENST00000517277 103 ntBASIC-2.09□□□□□ -2.74
CCDC88AQ3V6T2 Y_RNA.313-201ENST00000365095 103 ntBASIC-2.1□□□□□ -2.75
CCDC88AQ3V6T2 AC103810.7-201ENST00000607821 91 ntBASIC-2.1□□□□□ -2.75
CCDC88AQ3V6T2 ST7-OT3_3.1-201ENST00000611709 115 ntBASIC-2.1□□□□□ -2.75
CCDC88AQ3V6T2 Y_RNA.186-201ENST00000363899 92 ntBASIC-2.11□□□□□ -2.75
CCDC88AQ3V6T2 MIR3675-201ENST00000583661 73 ntBASIC-2.11□□□□□ -2.75
CCDC88AQ3V6T2 U6.81-201ENST00000612550 106 ntBASIC-2.11□□□□□ -2.75
CCDC88AQ3V6T2 Y_RNA.563-201ENST00000384707 108 ntBASIC-2.11□□□□□ -2.75
CCDC88AQ3V6T2 MIR606-201ENST00000384851 96 ntBASIC-2.11□□□□□ -2.75
CCDC88AQ3V6T2 RNU7-120P-201ENST00000459334 63 ntBASIC-2.11□□□□□ -2.75
CCDC88AQ3V6T2 AC008737.2-201ENST00000599446 118 ntBASIC-2.11□□□□□ -2.75
CCDC88AQ3V6T2 Y_RNA.8-201ENST00000362353 102 ntBASIC-2.12□□□□□ -2.75
CCDC88AQ3V6T2 RNU6-340P-201ENST00000364005 107 ntBASIC-2.12□□□□□ -2.75
CCDC88AQ3V6T2 SNORA20.1-201ENST00000364790 130 ntBASIC-2.12□□□□□ -2.75
CCDC88AQ3V6T2 MIR548Q-201ENST00000408404 100 ntBASIC-2.12□□□□□ -2.75
CCDC88AQ3V6T2 RNU6-682P-201ENST00000363843 106 ntBASIC-2.13□□□□□ -2.75
CCDC88AQ3V6T2 CR2-207ENST00000640301 151 ntTSL 1 (best) BASIC-2.13□□□□□ -2.75
CCDC88AQ3V6T2 Y_RNA.188-201ENST00000363952 111 ntBASIC-2.14□□□□□ -2.75
CCDC88AQ3V6T2 MIR487B-201ENST00000385021 84 ntBASIC-2.14□□□□□ -2.75
CCDC88AQ3V6T2 Y_RNA.74-201ENST00000362911 99 ntBASIC-2.14□□□□□ -2.75
CCDC88AQ3V6T2 MTCYBP9-201ENST00000431021 303 ntBASIC-2.14□□□□□ -2.75
CCDC88AQ3V6T2 RNU6-772P-201ENST00000516042 105 ntBASIC-2.14□□□□□ -2.75
CCDC88AQ3V6T2 RNU6-1174P-201ENST00000517278 101 ntBASIC-2.14□□□□□ -2.75
CCDC88AQ3V6T2 MIR3144-201ENST00000579460 79 ntBASIC-2.14□□□□□ -2.75
CCDC88AQ3V6T2 Y_RNA.281-201ENST00000364774 94 ntBASIC-2.15□□□□□ -2.75
CCDC88AQ3V6T2 RNU6-841P-201ENST00000383872 107 ntBASIC-2.15□□□□□ -2.75
CCDC88AQ3V6T2 Y_RNA.668-201ENST00000516233 93 ntBASIC-2.15□□□□□ -2.75
CCDC88AQ3V6T2 RNU7-174P-201ENST00000516248 59 ntBASIC-2.15□□□□□ -2.75
CCDC88AQ3V6T2 RNU6-1089P-201ENST00000516473 104 ntBASIC-2.15□□□□□ -2.75
CCDC88AQ3V6T2 RNU6-807P-201ENST00000516805 107 ntBASIC-2.15□□□□□ -2.75
CCDC88AQ3V6T2 MIR6874-201ENST00000635894 71 ntBASIC-2.15□□□□□ -2.75
CCDC88AQ3V6T2 RNU6-1061P-201ENST00000516530 99 ntBASIC-2.16□□□□□ -2.75
CCDC88AQ3V6T2 AL353621.2-201ENST00000605340 133 ntBASIC-2.16□□□□□ -2.75
CCDC88AQ3V6T2 MIR429-201ENST00000362106 83 ntBASIC-2.16□□□□□ -2.76
CCDC88AQ3V6T2 RNU6-1079P-201ENST00000362861 110 ntBASIC-2.16□□□□□ -2.76
CCDC88AQ3V6T2 RNU6-111P-201ENST00000517179 105 ntBASIC-2.16□□□□□ -2.76
CCDC88AQ3V6T2 U2.7-201ENST00000619197 100 ntBASIC-2.16□□□□□ -2.76
CCDC88AQ3V6T2 RNU6-394P-201ENST00000410735 107 ntBASIC-2.17□□□□□ -2.76
CCDC88AQ3V6T2 RNU6-630P-201ENST00000391258 106 ntBASIC-2.18□□□□□ -2.76
CCDC88AQ3V6T2 RNU6-518P-201ENST00000516056 96 ntBASIC-2.18□□□□□ -2.76
CCDC88AQ3V6T2 Y_RNA.211-201ENST00000364164 101 ntBASIC-2.18□□□□□ -2.76
CCDC88AQ3V6T2 AC120024.2-201ENST00000576526 175 ntBASIC-2.18□□□□□ -2.76
CCDC88AQ3V6T2 MIR548X2-201ENST00000579776 100 ntBASIC-2.18□□□□□ -2.76
CCDC88AQ3V6T2 RNU6-478P-201ENST00000363904 110 ntBASIC-2.19□□□□□ -2.76
CCDC88AQ3V6T2 Y_RNA.236-201ENST00000364427 111 ntBASIC-2.19□□□□□ -2.76
CCDC88AQ3V6T2 Y_RNA.443-201ENST00000384135 111 ntBASIC-2.19□□□□□ -2.76
CCDC88AQ3V6T2 Y_RNA.11-201ENST00000362375 109 ntBASIC-2.2□□□□□ -2.76
CCDC88AQ3V6T2 RNU6-698P-201ENST00000363523 107 ntBASIC-2.2□□□□□ -2.76
CCDC88AQ3V6T2 Y_RNA.264-201ENST00000364665 102 ntBASIC-2.2□□□□□ -2.76
CCDC88AQ3V6T2 RNU6-34P-201ENST00000364874 107 ntBASIC-2.2□□□□□ -2.76
CCDC88AQ3V6T2 RNU6-458P-201ENST00000384179 107 ntBASIC-2.2□□□□□ -2.76
CCDC88AQ3V6T2 Y_RNA.603-201ENST00000410571 108 ntBASIC-2.2□□□□□ -2.76
CCDC88AQ3V6T2 SCARNA23-201ENST00000516060 130 ntBASIC-2.2□□□□□ -2.76
CCDC88AQ3V6T2 U6.58-201ENST00000613107 107 ntBASIC-2.2□□□□□ -2.76
CCDC88AQ3V6T2 U4.4-201ENST00000620626 117 ntBASIC-2.2□□□□□ -2.76
CCDC88AQ3V6T2 RNA5SP215-201ENST00000363440 122 ntBASIC-2.2□□□□□ -2.76
CCDC88AQ3V6T2 Y_RNA.566-201ENST00000384735 101 ntBASIC-2.2□□□□□ -2.76
CCDC88AQ3V6T2 TRAJ61-201ENST00000390479 60 ntAPPRIS P1 BASIC-2.2□□□□□ -2.76
CCDC88AQ3V6T2 RNU7-61P-201ENST00000515897 61 ntBASIC-2.2□□□□□ -2.76
CCDC88AQ3V6T2 Y_RNA.720-201ENST00000517166 92 ntBASIC-2.2□□□□□ -2.76
CCDC88AQ3V6T2 MIR519C-201ENST00000385053 87 ntBASIC-2.21□□□□□ -2.76
CCDC88AQ3V6T2 MIR1302-3-201ENST00000408128 138 ntBASIC-2.21□□□□□ -2.76
CCDC88AQ3V6T2 AL158147.1-201ENST00000443970 75 ntBASIC-2.21□□□□□ -2.76
CCDC88AQ3V6T2 AC013248.1-201ENST00000455092 232 ntTSL 3 BASIC-2.21□□□□□ -2.76
CCDC88AQ3V6T2 Y_RNA.781-201ENST00000620301 103 ntBASIC-2.21□□□□□ -2.76
CCDC88AQ3V6T2 AL035470.1-201ENST00000622571 220 ntBASIC-2.21□□□□□ -2.76
CCDC88AQ3V6T2 TARS-215ENST00000626210 201 ntTSL 5 BASIC-2.21□□□□□ -2.76
CCDC88AQ3V6T2 RNU6-194P-201ENST00000363862 105 ntBASIC-2.22□□□□□ -2.77
CCDC88AQ3V6T2 Y_RNA.193-201ENST00000363979 102 ntBASIC-2.22□□□□□ -2.77
CCDC88AQ3V6T2 SNORD90-201ENST00000391145 111 ntBASIC-2.22□□□□□ -2.77
CCDC88AQ3V6T2 Y_RNA.282-201ENST00000364793 102 ntBASIC-2.23□□□□□ -2.77
CCDC88AQ3V6T2 MIR548AA1-201ENST00000384971 97 ntBASIC-2.23□□□□□ -2.77
CCDC88AQ3V6T2 RNU6-1152P-201ENST00000384576 107 ntBASIC-2.24□□□□□ -2.77
CCDC88AQ3V6T2 SNORD77.2-201ENST00000391045 68 ntBASIC-2.24□□□□□ -2.77
CCDC88AQ3V6T2 LINC01984-201ENST00000583863 301 ntTSL 3 BASIC-2.24□□□□□ -2.77
CCDC88AQ3V6T2 RNU6-867P-201ENST00000364956 107 ntBASIC-2.24□□□□□ -2.77
CCDC88AQ3V6T2 RNU6-1306P-201ENST00000365219 99 ntBASIC-2.24□□□□□ -2.77
CCDC88AQ3V6T2 MIR568-201ENST00000385036 95 ntBASIC-2.25□□□□□ -2.77
CCDC88AQ3V6T2 RNU6-795P-201ENST00000516323 103 ntBASIC-2.25□□□□□ -2.77
Retrieved 100 of 98,524 protein–RNA pairs in 14.2 ms