Protein–RNA interactions for Protein: P52701

MSH6, DNA mismatch repair protein Msh6, humanhuman

Predictions only

Length 1,360 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH6P52701 LMBR1-222ENST00000638959 93 ntTSL 5 BASIC-1.3□□□□□ -2.62
MSH6P52701 SNORD116-14-201ENST00000383894 92 ntBASIC-1.31□□□□□ -2.62
MSH6P52701 SNORD116-17-201ENST00000383929 92 ntBASIC-1.31□□□□□ -2.62
MSH6P52701 SNORD116-15-201ENST00000384445 92 ntBASIC-1.31□□□□□ -2.62
MSH6P52701 SNORD116-19-201ENST00000384729 92 ntBASIC-1.31□□□□□ -2.62
MSH6P52701 Y_RNA.609-201ENST00000410669 89 ntBASIC-1.31□□□□□ -2.62
MSH6P52701 RNU6-924P-201ENST00000362926 108 ntBASIC-1.32□□□□□ -2.62
MSH6P52701 AC079760.1-201ENST00000456952 202 ntTSL 3 BASIC-1.33□□□□□ -2.62
MSH6P52701 RNU6-706P-201ENST00000517229 104 ntBASIC-1.33□□□□□ -2.62
MSH6P52701 AC090425.1-201ENST00000610007 140 ntBASIC-1.33□□□□□ -2.62
MSH6P52701 DLEU2_3.2-201ENST00000612883 73 ntBASIC-1.33□□□□□ -2.62
MSH6P52701 HOTAIRM1_3.1-201ENST00000619974 59 ntBASIC-1.33□□□□□ -2.62
MSH6P52701 MIR590-201ENST00000385008 97 ntBASIC-1.34□□□□□ -2.62
MSH6P52701 RNU7-61P-201ENST00000515897 61 ntBASIC-1.34□□□□□ -2.62
MSH6P52701 MIR6739-201ENST00000622461 75 ntBASIC-1.34□□□□□ -2.62
MSH6P52701 RNU6-1157P-201ENST00000384456 106 ntBASIC-1.34□□□□□ -2.62
MSH6P52701 MIR1302-5-201ENST00000408164 150 ntBASIC-1.34□□□□□ -2.62
MSH6P52701 Y_RNA.698-201ENST00000516798 118 ntBASIC-1.34□□□□□ -2.62
MSH6P52701 snoU83B.1-201ENST00000517136 88 ntBASIC-1.35□□□□□ -2.63
MSH6P52701 RNU6-1113P-201ENST00000384348 107 ntBASIC-1.36□□□□□ -2.63
MSH6P52701 RNU6-752P-201ENST00000516376 102 ntBASIC-1.36□□□□□ -2.63
MSH6P52701 RNU7-153P-201ENST00000516455 62 ntBASIC-1.36□□□□□ -2.63
MSH6P52701 Y_RNA.93-201ENST00000363066 109 ntBASIC-1.37□□□□□ -2.63
MSH6P52701 Y_RNA.190-201ENST00000363964 101 ntBASIC-1.37□□□□□ -2.63
MSH6P52701 AL450471.1-201ENST00000447509 127 ntBASIC-1.37□□□□□ -2.63
MSH6P52701 RNU6-1333P-201ENST00000516162 93 ntBASIC-1.37□□□□□ -2.63
MSH6P52701 RNU7-154P-201ENST00000516194 62 ntBASIC-1.37□□□□□ -2.63
MSH6P52701 MIR1246-201ENST00000636535 73 ntBASIC-1.37□□□□□ -2.63
MSH6P52701 Y_RNA.375-201ENST00000365625 101 ntBASIC-1.38□□□□□ -2.63
MSH6P52701 MIR519A2-201ENST00000384990 87 ntBASIC-1.38□□□□□ -2.63
MSH6P52701 snosnR66.1-201ENST00000391095 99 ntBASIC-1.38□□□□□ -2.63
MSH6P52701 Y_RNA.228-201ENST00000364346 98 ntBASIC-1.39□□□□□ -2.63
MSH6P52701 TRAJ37-201ENST00000612375 65 ntAPPRIS P1 BASIC-1.39□□□□□ -2.63
MSH6P52701 Y_RNA.818-201ENST00000618813 71 ntBASIC-1.39□□□□□ -2.63
MSH6P52701 Y_RNA.107-201ENST00000363190 121 ntBASIC-1.4□□□□□ -2.63
MSH6P52701 SNORD115-33-201ENST00000363723 82 ntBASIC-1.4□□□□□ -2.63
MSH6P52701 RNU6-340P-201ENST00000364005 107 ntBASIC-1.4□□□□□ -2.63
MSH6P52701 Y_RNA.616-201ENST00000410835 95 ntBASIC-1.4□□□□□ -2.63
MSH6P52701 U7.3-201ENST00000616123 62 ntBASIC-1.4□□□□□ -2.63
MSH6P52701 RNU6-681P-201ENST00000364012 104 ntBASIC-1.41□□□□□ -2.64
MSH6P52701 RNU6-704P-201ENST00000364162 103 ntBASIC-1.41□□□□□ -2.64
MSH6P52701 RNU6-106P-201ENST00000384405 107 ntBASIC-1.41□□□□□ -2.64
MSH6P52701 SNORA26.4-201ENST00000391188 123 ntBASIC-1.41□□□□□ -2.64
MSH6P52701 HLA-S-202ENST00000425174 53 ntBASIC-1.42□□□□□ -2.64
MSH6P52701 RNU6-162P-201ENST00000516228 103 ntBASIC-1.42□□□□□ -2.64
MSH6P52701 RNU6-109P-201ENST00000516364 107 ntBASIC-1.42□□□□□ -2.64
MSH6P52701 RNU6-184P-201ENST00000516514 107 ntBASIC-1.42□□□□□ -2.64
MSH6P52701 Y_RNA.613-201ENST00000410726 97 ntBASIC-1.43□□□□□ -2.64
MSH6P52701 SNORD63.1-201ENST00000516178 80 ntBASIC-1.43□□□□□ -2.64
MSH6P52701 RNU6-554P-201ENST00000410466 106 ntBASIC-1.44□□□□□ -2.64
MSH6P52701 Y_RNA.703-201ENST00000516846 111 ntBASIC-1.44□□□□□ -2.64
MSH6P52701 MIR3133-201ENST00000583157 78 ntBASIC-1.44□□□□□ -2.64
MSH6P52701 Y_RNA.261-201ENST00000364631 102 ntBASIC-1.45□□□□□ -2.64
MSH6P52701 Y_RNA.442-201ENST00000384131 102 ntBASIC-1.45□□□□□ -2.64
MSH6P52701 RNU6-959P-201ENST00000384671 107 ntBASIC-1.45□□□□□ -2.64
MSH6P52701 AL021921.1-201ENST00000442774 93 ntBASIC-1.45□□□□□ -2.64
MSH6P52701 FAS-AS1.1-201ENST00000615327 126 ntBASIC-1.45□□□□□ -2.64
MSH6P52701 SNORD115-27-201ENST00000364430 82 ntBASIC-1.46□□□□□ -2.64
MSH6P52701 RNU6-746P-201ENST00000384112 109 ntBASIC-1.46□□□□□ -2.64
MSH6P52701 MIR519C-201ENST00000385053 87 ntBASIC-1.46□□□□□ -2.64
MSH6P52701 TRAJ61-201ENST00000390479 60 ntAPPRIS P1 BASIC-1.46□□□□□ -2.64
MSH6P52701 RNU6-518P-201ENST00000516056 96 ntBASIC-1.46□□□□□ -2.64
MSH6P52701 SNORD77.2-201ENST00000391045 68 ntBASIC-1.47□□□□□ -2.64
MSH6P52701 AC138207.3-201ENST00000585289 166 ntBASIC-1.47□□□□□ -2.64
MSH6P52701 RNU6-226P-201ENST00000363778 107 ntBASIC-1.47□□□□□ -2.65
MSH6P52701 Y_RNA.264-201ENST00000364665 102 ntBASIC-1.48□□□□□ -2.65
MSH6P52701 MIR29B1-201ENST00000385015 81 ntBASIC-1.48□□□□□ -2.65
MSH6P52701 AL035461.1-201ENST00000421490 332 ntBASIC-1.48□□□□□ -2.65
MSH6P52701 AC008267.6-201ENST00000441664 139 ntBASIC-1.48□□□□□ -2.65
MSH6P52701 RNU6-656P-201ENST00000516785 107 ntBASIC-1.48□□□□□ -2.65
MSH6P52701 ULK3-223ENST00000631115 126 ntTSL 5 BASIC-1.48□□□□□ -2.65
MSH6P52701 RNU6-1233P-201ENST00000362922 102 ntBASIC-1.49□□□□□ -2.65
MSH6P52701 SNORD115-22-201ENST00000364456 82 ntBASIC-1.49□□□□□ -2.65
MSH6P52701 SNORA19-201ENST00000384737 128 ntBASIC-1.49□□□□□ -2.65
MSH6P52701 Y_RNA.365-201ENST00000365537 102 ntBASIC-1.5□□□□□ -2.65
MSH6P52701 MIR8485-201ENST00000401372 91 ntBASIC-1.5□□□□□ -2.65
MSH6P52701 MTATP8P2-201ENST00000435212 202 ntBASIC-1.5□□□□□ -2.65
MSH6P52701 Y_RNA.290-201ENST00000364879 114 ntBASIC-1.51□□□□□ -2.65
MSH6P52701 RNU6-766P-201ENST00000362478 107 ntBASIC-1.52□□□□□ -2.65
MSH6P52701 RNU6-633P-201ENST00000362612 103 ntBASIC-1.52□□□□□ -2.65
MSH6P52701 RNU6-774P-201ENST00000363238 107 ntBASIC-1.52□□□□□ -2.65
MSH6P52701 RNU6-209P-201ENST00000384118 107 ntBASIC-1.52□□□□□ -2.65
MSH6P52701 Y_RNA.475-201ENST00000384345 101 ntBASIC-1.52□□□□□ -2.65
MSH6P52701 RNU6-624P-201ENST00000363411 107 ntBASIC-1.53□□□□□ -2.65
MSH6P52701 RNU6-81P-201ENST00000365608 104 ntBASIC-1.53□□□□□ -2.65
MSH6P52701 Y_RNA.544-201ENST00000384650 113 ntBASIC-1.53□□□□□ -2.65
MSH6P52701 AL031386.1-201ENST00000411940 142 ntTSL 5 BASIC-1.53□□□□□ -2.65
MSH6P52701 RNU6-479P-201ENST00000516348 105 ntBASIC-1.53□□□□□ -2.65
MSH6P52701 RNU6-589P-201ENST00000516485 107 ntBASIC-1.53□□□□□ -2.65
MSH6P52701 MIR5591-201ENST00000578248 65 ntBASIC-1.53□□□□□ -2.65
MSH6P52701 MIR6129-201ENST00000616087 109 ntBASIC-1.53□□□□□ -2.65
MSH6P52701 U2.7-201ENST00000619197 100 ntBASIC-1.53□□□□□ -2.65
MSH6P52701 MIR6818-201ENST00000621576 65 ntBASIC-1.53□□□□□ -2.65
MSH6P52701 Y_RNA.543-201ENST00000384649 107 ntBASIC-1.54□□□□□ -2.66
MSH6P52701 AL353691.2-201ENST00000443795 59 ntBASIC-1.54□□□□□ -2.66
MSH6P52701 RNU7-134P-201ENST00000458997 64 ntBASIC-1.54□□□□□ -2.66
MSH6P52701 AL365222.1-201ENST00000614661 98 ntBASIC-1.54□□□□□ -2.66
MSH6P52701 LEKR1-212ENST00000640869 237 ntTSL 5 BASIC-1.54□□□□□ -2.66
MSH6P52701 SNORD115-37-201ENST00000363768 82 ntBASIC-1.55□□□□□ -2.66
MSH6P52701 Y_RNA.348-201ENST00000365403 103 ntBASIC-1.55□□□□□ -2.66
Retrieved 100 of 98,524 protein–RNA pairs in 211 ms