Protein–RNA interactions for Protein: P39060

COL18A1, Collagen alpha-1(XVIII) chain, humanhuman

Predictions only

Length 1,754 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL18A1P39060 RNU6-972P-201ENST00000391208 107 ntBASIC-1.45□□□□□ -2.64
COL18A1P39060 AL353795.2-201ENST00000431804 425 ntTSL 2 BASIC-1.45□□□□□ -2.64
COL18A1P39060 MTND3P2-201ENST00000438452 342 ntBASIC-1.45□□□□□ -2.64
COL18A1P39060 MIR6739-201ENST00000622461 75 ntBASIC-1.45□□□□□ -2.64
COL18A1P39060 MIR664B-201ENST00000626756 61 ntBASIC-1.45□□□□□ -2.64
COL18A1P39060 MIR519A2-201ENST00000384990 87 ntBASIC-1.46□□□□□ -2.64
COL18A1P39060 RNU6-1045P-201ENST00000516321 107 ntBASIC-1.46□□□□□ -2.64
COL18A1P39060 Y_RNA.96-201ENST00000363092 109 ntBASIC-1.47□□□□□ -2.64
COL18A1P39060 Y_RNA.502-201ENST00000384478 113 ntBASIC-1.47□□□□□ -2.64
COL18A1P39060 MIR569-201ENST00000385228 96 ntBASIC-1.47□□□□□ -2.64
COL18A1P39060 Y_RNA.698-201ENST00000516798 118 ntBASIC-1.47□□□□□ -2.64
COL18A1P39060 MIR4777-201ENST00000583710 86 ntBASIC-1.47□□□□□ -2.64
COL18A1P39060 AL035470.1-201ENST00000622571 220 ntBASIC-1.47□□□□□ -2.64
COL18A1P39060 Y_RNA.348-201ENST00000365403 103 ntBASIC-1.47□□□□□ -2.65
COL18A1P39060 RNU6-746P-201ENST00000384112 109 ntBASIC-1.47□□□□□ -2.65
COL18A1P39060 SNORD90-201ENST00000391145 111 ntBASIC-1.47□□□□□ -2.65
COL18A1P39060 Y_RNA.604-201ENST00000410574 102 ntBASIC-1.47□□□□□ -2.65
COL18A1P39060 RNU6-1333P-201ENST00000516162 93 ntBASIC-1.47□□□□□ -2.65
COL18A1P39060 AL353691.2-201ENST00000443795 59 ntBASIC-1.48□□□□□ -2.65
COL18A1P39060 Y_RNA.705-201ENST00000516862 110 ntBASIC-1.48□□□□□ -2.65
COL18A1P39060 Y_RNA.398-201ENST00000383952 99 ntBASIC-1.49□□□□□ -2.65
COL18A1P39060 Y_RNA.558-201ENST00000384685 113 ntBASIC-1.49□□□□□ -2.65
COL18A1P39060 Y_RNA.649-201ENST00000459077 103 ntBASIC-1.49□□□□□ -2.65
COL18A1P39060 ST7-OT3_3.1-201ENST00000611709 115 ntBASIC-1.49□□□□□ -2.65
COL18A1P39060 Y_RNA.284-201ENST00000364806 102 ntBASIC-1.5□□□□□ -2.65
COL18A1P39060 RNU6-804P-201ENST00000384286 107 ntBASIC-1.5□□□□□ -2.65
COL18A1P39060 RNU6-772P-201ENST00000516042 105 ntBASIC-1.5□□□□□ -2.65
COL18A1P39060 RNU6-681P-201ENST00000364012 104 ntBASIC-1.51□□□□□ -2.65
COL18A1P39060 SNORA19.1-201ENST00000410656 129 ntBASIC-1.51□□□□□ -2.65
COL18A1P39060 MTND4LP9-201ENST00000427694 174 ntBASIC-1.51□□□□□ -2.65
COL18A1P39060 RNU6-803P-201ENST00000516034 102 ntBASIC-1.51□□□□□ -2.65
COL18A1P39060 MIR4490-201ENST00000582647 84 ntBASIC-1.51□□□□□ -2.65
COL18A1P39060 Y_RNA.144-201ENST00000363521 113 ntBASIC-1.52□□□□□ -2.65
COL18A1P39060 RNU6-379P-201ENST00000363813 104 ntBASIC-1.52□□□□□ -2.65
COL18A1P39060 SNORA40-201ENST00000388090 126 ntBASIC-1.52□□□□□ -2.65
COL18A1P39060 MIR1236-201ENST00000408340 102 ntBASIC-1.52□□□□□ -2.65
COL18A1P39060 Y_RNA.606-201ENST00000410579 103 ntBASIC-1.52□□□□□ -2.65
COL18A1P39060 RNU6-887P-201ENST00000410660 100 ntBASIC-1.52□□□□□ -2.65
COL18A1P39060 AC108019.1-201ENST00000512540 175 ntBASIC-1.52□□□□□ -2.65
COL18A1P39060 RNU6-795P-201ENST00000516323 103 ntBASIC-1.52□□□□□ -2.65
COL18A1P39060 Y_RNA.678-201ENST00000516408 96 ntBASIC-1.52□□□□□ -2.65
COL18A1P39060 RNA5SP405-201ENST00000363059 114 ntBASIC-1.52□□□□□ -2.65
COL18A1P39060 AL021921.1-201ENST00000442774 93 ntBASIC-1.52□□□□□ -2.65
COL18A1P39060 AL353621.2-201ENST00000605340 133 ntBASIC-1.52□□□□□ -2.65
COL18A1P39060 AC012531.4-201ENST00000616509 177 ntBASIC-1.52□□□□□ -2.65
COL18A1P39060 SCARNA23-201ENST00000516060 130 ntBASIC-1.53□□□□□ -2.65
COL18A1P39060 RNU6-426P-201ENST00000516464 97 ntBASIC-1.53□□□□□ -2.65
COL18A1P39060 U6.81-201ENST00000612550 106 ntBASIC-1.53□□□□□ -2.65
COL18A1P39060 DLEU2_3.2-201ENST00000612883 73 ntBASIC-1.53□□□□□ -2.65
COL18A1P39060 FAS-AS1.1-201ENST00000615327 126 ntBASIC-1.53□□□□□ -2.65
COL18A1P39060 CR2-207ENST00000640301 151 ntTSL 1 (best) BASIC-1.53□□□□□ -2.65
COL18A1P39060 Y_RNA.188-201ENST00000363952 111 ntBASIC-1.54□□□□□ -2.66
COL18A1P39060 SNORD115-22-201ENST00000364456 82 ntBASIC-1.54□□□□□ -2.66
COL18A1P39060 RNU6-80P-201ENST00000384195 107 ntBASIC-1.54□□□□□ -2.66
COL18A1P39060 RNU6-1211P-201ENST00000459179 105 ntBASIC-1.54□□□□□ -2.66
COL18A1P39060 RNU6-752P-201ENST00000516376 102 ntBASIC-1.54□□□□□ -2.66
COL18A1P39060 RNU6-412P-201ENST00000516434 106 ntBASIC-1.54□□□□□ -2.66
COL18A1P39060 Y_RNA.162-201ENST00000363683 102 ntBASIC-1.54□□□□□ -2.66
COL18A1P39060 Y_RNA.343-201ENST00000365354 112 ntBASIC-1.54□□□□□ -2.66
COL18A1P39060 RNU6-1011P-201ENST00000384668 107 ntBASIC-1.54□□□□□ -2.66
COL18A1P39060 MIR4756-201ENST00000577874 78 ntBASIC-1.54□□□□□ -2.66
COL18A1P39060 MIR4796-201ENST00000580742 81 ntBASIC-1.54□□□□□ -2.66
COL18A1P39060 Y_RNA.564-201ENST00000384708 106 ntBASIC-1.55□□□□□ -2.66
COL18A1P39060 MIR548A3-201ENST00000385297 97 ntBASIC-1.55□□□□□ -2.66
COL18A1P39060 RNU2-51P-201ENST00000410708 197 ntBASIC-1.55□□□□□ -2.66
COL18A1P39060 RNU6-518P-201ENST00000516056 96 ntBASIC-1.55□□□□□ -2.66
COL18A1P39060 RNU6-182P-201ENST00000516970 105 ntBASIC-1.55□□□□□ -2.66
COL18A1P39060 TARS-215ENST00000626210 201 ntTSL 5 BASIC-1.55□□□□□ -2.66
COL18A1P39060 Y_RNA.443-201ENST00000384135 111 ntBASIC-1.56□□□□□ -2.66
COL18A1P39060 RNU6-574P-201ENST00000384265 107 ntBASIC-1.56□□□□□ -2.66
COL18A1P39060 AL450471.1-201ENST00000447509 127 ntBASIC-1.56□□□□□ -2.66
COL18A1P39060 RNA5SP26-201ENST00000362406 119 ntBASIC-1.57□□□□□ -2.66
COL18A1P39060 RNU6-164P-201ENST00000364604 103 ntBASIC-1.57□□□□□ -2.66
COL18A1P39060 RNU6-463P-201ENST00000384340 107 ntBASIC-1.57□□□□□ -2.66
COL18A1P39060 SNORD116-10-201ENST00000363791 102 ntBASIC-1.57□□□□□ -2.66
COL18A1P39060 RNU6-388P-201ENST00000517012 105 ntBASIC-1.57□□□□□ -2.66
COL18A1P39060 RNU6-389P-201ENST00000517048 105 ntBASIC-1.57□□□□□ -2.66
COL18A1P39060 RNU6-1238P-201ENST00000517215 102 ntBASIC-1.57□□□□□ -2.66
COL18A1P39060 RNU6ATAC23P-201ENST00000408448 123 ntBASIC-1.58□□□□□ -2.66
COL18A1P39060 SNORD115-27-201ENST00000364430 82 ntBASIC-1.59□□□□□ -2.66
COL18A1P39060 AL078595.1-201ENST00000404458 226 ntBASIC-1.59□□□□□ -2.66
COL18A1P39060 U7.5-201ENST00000517224 61 ntBASIC-1.59□□□□□ -2.66
COL18A1P39060 RNU6-537P-201ENST00000517277 103 ntBASIC-1.59□□□□□ -2.66
COL18A1P39060 TRAJ37-201ENST00000612375 65 ntAPPRIS P1 BASIC-1.59□□□□□ -2.66
COL18A1P39060 Y_RNA.281-201ENST00000364774 94 ntBASIC-1.59□□□□□ -2.66
COL18A1P39060 RNU6-1113P-201ENST00000384348 107 ntBASIC-1.59□□□□□ -2.66
COL18A1P39060 MIR5683-201ENST00000636514 76 ntBASIC-1.59□□□□□ -2.66
COL18A1P39060 MIR3914-2-201ENST00000637339 95 ntBASIC-1.6□□□□□ -2.67
COL18A1P39060 RNU6-340P-201ENST00000364005 107 ntBASIC-1.61□□□□□ -2.67
COL18A1P39060 MT-TG-201ENST00000387429 68 ntBASIC-1.61□□□□□ -2.67
COL18A1P39060 Y_RNA.609-201ENST00000410669 89 ntBASIC-1.61□□□□□ -2.67
COL18A1P39060 RNU7-107P-201ENST00000459121 61 ntBASIC-1.61□□□□□ -2.67
COL18A1P39060 Y_RNA.658-201ENST00000515990 97 ntBASIC-1.61□□□□□ -2.67
COL18A1P39060 MTND5P41-201ENST00000517498 206 ntBASIC-1.61□□□□□ -2.67
COL18A1P39060 LINC01984-201ENST00000583863 301 ntTSL 3 BASIC-1.61□□□□□ -2.67
COL18A1P39060 U6.95-201ENST00000636931 70 ntBASIC-1.61□□□□□ -2.67
COL18A1P39060 RNU6-194P-201ENST00000363862 105 ntBASIC-1.62□□□□□ -2.67
COL18A1P39060 RNU6-1306P-201ENST00000365219 99 ntBASIC-1.62□□□□□ -2.67
COL18A1P39060 RNU6-257P-201ENST00000410238 98 ntBASIC-1.62□□□□□ -2.67
COL18A1P39060 SNORD19-201ENST00000391191 68 ntBASIC-1.63□□□□□ -2.67
Retrieved 100 of 98,524 protein–RNA pairs in 218.6 ms