Protein–RNA interactions for Protein: P31274

HOXC9, Homeobox protein Hox-C9, humanhuman

Predictions only

Length 260 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXC9P31274 RNU6-973P-201ENST00000364690 107 ntBASIC-0.53□□□□□ -2.49
HOXC9P31274 RNU6-337P-201ENST00000391243 106 ntBASIC-0.53□□□□□ -2.49
HOXC9P31274 MIR8068-201ENST00000618032 68 ntBASIC-0.53□□□□□ -2.49
HOXC9P31274 MIR101-1-201ENST00000362265 75 ntBASIC-0.54□□□□□ -2.5
HOXC9P31274 Y_RNA.81-201ENST00000362997 102 ntBASIC-0.54□□□□□ -2.5
HOXC9P31274 RNU6-497P-201ENST00000365316 104 ntBASIC-0.54□□□□□ -2.5
HOXC9P31274 RNU6-675P-201ENST00000384236 104 ntBASIC-0.54□□□□□ -2.5
HOXC9P31274 MIRLET7B-201ENST00000385140 83 ntBASIC-0.54□□□□□ -2.5
HOXC9P31274 SNORD75.1-201ENST00000408373 60 ntBASIC-0.54□□□□□ -2.5
HOXC9P31274 Y_RNA.633-201ENST00000459107 95 ntBASIC-0.54□□□□□ -2.5
HOXC9P31274 RNU6-752P-201ENST00000516376 102 ntBASIC-0.54□□□□□ -2.5
HOXC9P31274 YWHAEP3-201ENST00000582767 121 ntBASIC-0.54□□□□□ -2.5
HOXC9P31274 RNU6-624P-201ENST00000363411 107 ntBASIC-0.55□□□□□ -2.5
HOXC9P31274 SNORA33.1-201ENST00000364957 130 ntBASIC-0.55□□□□□ -2.5
HOXC9P31274 SNORA3B-201ENST00000391305 131 ntBASIC-0.55□□□□□ -2.5
HOXC9P31274 Y_RNA.593-201ENST00000410292 98 ntBASIC-0.55□□□□□ -2.5
HOXC9P31274 TRAJ37-201ENST00000612375 65 ntAPPRIS P1 BASIC-0.55□□□□□ -2.5
HOXC9P31274 snoMBII-202.2-201ENST00000517263 86 ntBASIC-0.56□□□□□ -2.5
HOXC9P31274 IGLL4P-201ENST00000614590 133 ntBASIC-0.56□□□□□ -2.5
HOXC9P31274 Y_RNA.250-201ENST00000364542 110 ntBASIC-0.57□□□□□ -2.5
HOXC9P31274 SNORA15B-2-201ENST00000384058 135 ntBASIC-0.57□□□□□ -2.5
HOXC9P31274 SNORA15B-1-201ENST00000384334 135 ntBASIC-0.57□□□□□ -2.5
HOXC9P31274 RNA5SP451-201ENST00000410588 110 ntBASIC-0.57□□□□□ -2.5
HOXC9P31274 RNU6-758P-201ENST00000516292 89 ntBASIC-0.57□□□□□ -2.5
HOXC9P31274 AC090617.8-201ENST00000623339 167 ntBASIC-0.57□□□□□ -2.5
HOXC9P31274 Y_RNA.73-201ENST00000362910 113 ntBASIC-0.58□□□□□ -2.5
HOXC9P31274 RNY1P1-201ENST00000364372 112 ntBASIC-0.58□□□□□ -2.5
HOXC9P31274 MIR204-201ENST00000385200 110 ntBASIC-0.58□□□□□ -2.5
HOXC9P31274 AL353795.2-201ENST00000431804 425 ntTSL 2 BASIC-0.58□□□□□ -2.5
HOXC9P31274 MIR6851-201ENST00000617060 67 ntBASIC-0.58□□□□□ -2.5
HOXC9P31274 AC006160.2-201ENST00000637708 154 ntBASIC-0.58□□□□□ -2.5
HOXC9P31274 RNU6-1184P-201ENST00000384588 108 ntBASIC-0.61□□□□□ -2.51
HOXC9P31274 MIR604-201ENST00000384880 94 ntBASIC-0.61□□□□□ -2.51
HOXC9P31274 RNU6-129P-201ENST00000391022 107 ntBASIC-0.61□□□□□ -2.51
HOXC9P31274 RNU6-721P-201ENST00000410155 105 ntBASIC-0.61□□□□□ -2.51
HOXC9P31274 AC021146.6-201ENST00000514659 117 ntBASIC-0.61□□□□□ -2.51
HOXC9P31274 RNU6-557P-201ENST00000516842 110 ntBASIC-0.61□□□□□ -2.51
HOXC9P31274 SNORD115-23-201ENST00000364461 82 ntBASIC-0.62□□□□□ -2.51
HOXC9P31274 RNU6-686P-201ENST00000364839 107 ntBASIC-0.62□□□□□ -2.51
HOXC9P31274 SNORA13-201ENST00000458790 133 ntBASIC-0.62□□□□□ -2.51
HOXC9P31274 MIR6854-201ENST00000614935 69 ntBASIC-0.62□□□□□ -2.51
HOXC9P31274 RNU6-478P-201ENST00000363904 110 ntBASIC-0.63□□□□□ -2.51
HOXC9P31274 Y_RNA.694-201ENST00000516677 117 ntBASIC-0.63□□□□□ -2.51
HOXC9P31274 SNORD95.1-201ENST00000364099 68 ntBASIC-0.64□□□□□ -2.51
HOXC9P31274 MIR1255B2-201ENST00000408618 67 ntBASIC-0.64□□□□□ -2.51
HOXC9P31274 RNU6-303P-201ENST00000517091 106 ntBASIC-0.64□□□□□ -2.51
HOXC9P31274 MIR3681-201ENST00000580089 72 ntBASIC-0.64□□□□□ -2.51
HOXC9P31274 Y_RNA.426-201ENST00000384068 113 ntBASIC-0.65□□□□□ -2.51
HOXC9P31274 MIR521-2-201ENST00000384818 87 ntBASIC-0.65□□□□□ -2.51
HOXC9P31274 RNU6-881P-201ENST00000516813 102 ntBASIC-0.65□□□□□ -2.51
HOXC9P31274 CYP3A54P-201ENST00000566950 75 ntBASIC-0.65□□□□□ -2.51
HOXC9P31274 AC108676.2-201ENST00000605225 163 ntBASIC-0.65□□□□□ -2.51
HOXC9P31274 SNORA8.1-201ENST00000384250 140 ntBASIC-0.66□□□□□ -2.52
HOXC9P31274 MIR518B-201ENST00000385127 83 ntBASIC-0.66□□□□□ -2.52
HOXC9P31274 Y_RNA.607-201ENST00000410597 98 ntBASIC-0.66□□□□□ -2.52
HOXC9P31274 SNORD22.1-201ENST00000516331 125 ntBASIC-0.66□□□□□ -2.52
HOXC9P31274 MIR5588-201ENST00000581890 63 ntBASIC-0.66□□□□□ -2.52
HOXC9P31274 MIR6739-201ENST00000622461 75 ntBASIC-0.66□□□□□ -2.52
HOXC9P31274 MIR494-201ENST00000349529 81 ntBASIC-0.67□□□□□ -2.52
HOXC9P31274 RNU6-330P-201ENST00000363015 107 ntBASIC-0.67□□□□□ -2.52
HOXC9P31274 Y_RNA.484-201ENST00000384389 103 ntBASIC-0.67□□□□□ -2.52
HOXC9P31274 MIRLET7A1-201ENST00000362295 80 ntBASIC-0.68□□□□□ -2.52
HOXC9P31274 RNU6-294P-201ENST00000364999 102 ntBASIC-0.68□□□□□ -2.52
HOXC9P31274 MIR224-201ENST00000384889 81 ntBASIC-0.68□□□□□ -2.52
HOXC9P31274 SCARNA20.2-201ENST00000516052 116 ntBASIC-0.68□□□□□ -2.52
HOXC9P31274 MIR3179-1-201ENST00000578940 84 ntBASIC-0.68□□□□□ -2.52
HOXC9P31274 MIR3179-2-201ENST00000579107 84 ntBASIC-0.68□□□□□ -2.52
HOXC9P31274 MIR3179-3-201ENST00000579566 84 ntBASIC-0.68□□□□□ -2.52
HOXC9P31274 MIR4484-201ENST00000582855 83 ntBASIC-0.68□□□□□ -2.52
HOXC9P31274 MIR3675-201ENST00000583661 73 ntBASIC-0.68□□□□□ -2.52
HOXC9P31274 AL353803.5-201ENST00000599815 141 ntBASIC-0.68□□□□□ -2.52
HOXC9P31274 MIR3179-4-201ENST00000617599 84 ntBASIC-0.68□□□□□ -2.52
HOXC9P31274 TRAJ57-201ENST00000390482 63 ntAPPRIS P1 BASIC-0.69□□□□□ -2.52
HOXC9P31274 AC022137.1-201ENST00000483735 151 ntBASIC-0.69□□□□□ -2.52
HOXC9P31274 MIR5582-201ENST00000579697 68 ntBASIC-0.69□□□□□ -2.52
HOXC9P31274 Y_RNA.189-201ENST00000363959 112 ntBASIC-0.7□□□□□ -2.52
HOXC9P31274 Y_RNA.219-201ENST00000364232 113 ntBASIC-0.7□□□□□ -2.52
HOXC9P31274 MIR517B-201ENST00000385102 67 ntBASIC-0.7□□□□□ -2.52
HOXC9P31274 RNU6-380P-201ENST00000410207 107 ntBASIC-0.7□□□□□ -2.52
HOXC9P31274 SNORD74.6-201ENST00000364796 70 ntBASIC-0.71□□□□□ -2.52
HOXC9P31274 RNU6-979P-201ENST00000383896 107 ntBASIC-0.71□□□□□ -2.52
HOXC9P31274 Y_RNA.532-201ENST00000384590 113 ntBASIC-0.71□□□□□ -2.52
HOXC9P31274 AP000533.3-201ENST00000447704 118 ntBASIC-0.71□□□□□ -2.52
HOXC9P31274 RNA5SP470-201ENST00000516463 106 ntBASIC-0.71□□□□□ -2.52
HOXC9P31274 SNORD114-25-201ENST00000363742 72 ntBASIC-0.72□□□□□ -2.52
HOXC9P31274 SNORA62.4-201ENST00000365504 151 ntBASIC-0.72□□□□□ -2.52
HOXC9P31274 RNU6-1250P-201ENST00000391218 107 ntBASIC-0.72□□□□□ -2.52
HOXC9P31274 Y_RNA.316-201ENST00000365118 111 ntBASIC-0.73□□□□□ -2.53
HOXC9P31274 RNU4-63P-201ENST00000411313 118 ntBASIC-0.73□□□□□ -2.53
HOXC9P31274 AC074348.1-201ENST00000426503 132 ntBASIC-0.73□□□□□ -2.53
HOXC9P31274 RNU6-807P-201ENST00000516805 107 ntBASIC-0.73□□□□□ -2.53
HOXC9P31274 MIR450A2-201ENST00000385022 100 ntBASIC-0.74□□□□□ -2.53
HOXC9P31274 MIR124-2-201ENST00000385081 109 ntBASIC-0.74□□□□□ -2.53
HOXC9P31274 MT-TQ-201ENST00000387372 72 ntBASIC-0.74□□□□□ -2.53
HOXC9P31274 MIR196A1-201ENST00000388006 70 ntBASIC-0.74□□□□□ -2.53
HOXC9P31274 RNU6-604P-201ENST00000390917 100 ntBASIC-0.74□□□□□ -2.53
HOXC9P31274 RNU6-518P-201ENST00000516056 96 ntBASIC-0.74□□□□□ -2.53
HOXC9P31274 RNU6-656P-201ENST00000516785 107 ntBASIC-0.74□□□□□ -2.53
HOXC9P31274 RNU6-645P-201ENST00000364649 106 ntBASIC-0.75□□□□□ -2.53
HOXC9P31274 RNU6-242P-201ENST00000384359 107 ntBASIC-0.75□□□□□ -2.53
Retrieved 100 of 98,524 protein–RNA pairs in 202.6 ms