Protein–RNA interactions for Protein: P20849

COL9A1, Collagen alpha-1(IX) chain, humanhuman

Predictions only

Length 921 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A1P20849 RNU6-1206P-201ENST00000516339 103 ntBASIC1.59□□□□□ -2.15
COL9A1P20849 AC011195.1-201ENST00000578177 177 ntBASIC1.59□□□□□ -2.15
COL9A1P20849 AC012493.3-201ENST00000604494 112 ntBASIC1.59□□□□□ -2.15
COL9A1P20849 AC090617.8-201ENST00000623339 167 ntBASIC1.59□□□□□ -2.15
COL9A1P20849 MIR6767-201ENST00000637302 66 ntBASIC1.59□□□□□ -2.15
COL9A1P20849 RNU7-160P-201ENST00000516660 62 ntBASIC1.58□□□□□ -2.16
COL9A1P20849 SENP7-207ENST00000394095 4945 ntAPPRIS P3 TSL 1 (best) BASIC1.58□□□□□ -2.16
COL9A1P20849 SNORD99-201ENST00000408612 74 ntBASIC1.57□□□□□ -2.16
COL9A1P20849 SNORA70.25-201ENST00000612741 95 ntBASIC1.57□□□□□ -2.16
COL9A1P20849 SNORD26-201ENST00000384147 75 ntBASIC1.56□□□□□ -2.16
COL9A1P20849 HMGN2P22-201ENST00000427588 175 ntBASIC1.56□□□□□ -2.16
COL9A1P20849 RNA5SP470-201ENST00000516463 106 ntBASIC1.56□□□□□ -2.16
COL9A1P20849 RNU1-124P-201ENST00000363861 145 ntBASIC1.55□□□□□ -2.16
COL9A1P20849 RPS29P23-201ENST00000458635 123 ntBASIC1.55□□□□□ -2.16
COL9A1P20849 Y_RNA.69-201ENST00000362885 109 ntBASIC1.54□□□□□ -2.16
COL9A1P20849 SNORD114-29-201ENST00000364819 70 ntBASIC1.54□□□□□ -2.16
COL9A1P20849 VTRNA1-3-201ENST00000365645 89 ntBASIC1.54□□□□□ -2.16
COL9A1P20849 MIR548H4-201ENST00000408689 111 ntBASIC1.54□□□□□ -2.16
COL9A1P20849 AL451105.1-201ENST00000450005 189 ntBASIC1.54□□□□□ -2.16
COL9A1P20849 RNU6-1008P-201ENST00000384160 104 ntBASIC1.53□□□□□ -2.16
COL9A1P20849 JMJD1C-212ENST00000639129 7901 ntAPPRIS ALT2 TSL 5 BASIC1.53□□□□□ -2.17
COL9A1P20849 U7.6-201ENST00000610841 64 ntBASIC1.52□□□□□ -2.17
COL9A1P20849 SNORD115-25-201ENST00000362619 82 ntBASIC1.51□□□□□ -2.17
COL9A1P20849 Y_RNA.109-201ENST00000363215 102 ntBASIC1.51□□□□□ -2.17
COL9A1P20849 RNA5SP404-201ENST00000517118 132 ntBASIC1.51□□□□□ -2.17
COL9A1P20849 MIR329-2-201ENST00000385029 84 ntBASIC1.5□□□□□ -2.17
COL9A1P20849 AC092892.1-201ENST00000496067 327 ntTSL 5 BASIC1.5□□□□□ -2.17
COL9A1P20849 ABCA5-201ENST00000392676 8220 ntAPPRIS P1 TSL 1 (best) BASIC1.49□□□□□ -2.17
COL9A1P20849 RNU6-485P-201ENST00000363475 107 ntBASIC1.49□□□□□ -2.17
COL9A1P20849 MIR579-201ENST00000385221 98 ntBASIC1.49□□□□□ -2.17
COL9A1P20849 RNU6-337P-201ENST00000391243 106 ntBASIC1.49□□□□□ -2.17
COL9A1P20849 MIR1304-201ENST00000408243 91 ntBASIC1.49□□□□□ -2.17
COL9A1P20849 MIR4752-201ENST00000579672 72 ntBASIC1.49□□□□□ -2.17
COL9A1P20849 MIR6773-201ENST00000612812 74 ntBASIC1.49□□□□□ -2.17
COL9A1P20849 RNU6-828P-201ENST00000364876 107 ntBASIC1.48□□□□□ -2.17
COL9A1P20849 RNU7-151P-201ENST00000516930 53 ntBASIC1.48□□□□□ -2.17
COL9A1P20849 MIR3122-201ENST00000577243 73 ntBASIC1.48□□□□□ -2.17
COL9A1P20849 MIR548AG1-201ENST00000579932 66 ntBASIC1.48□□□□□ -2.17
COL9A1P20849 MIR8087-201ENST00000612745 78 ntBASIC1.48□□□□□ -2.17
COL9A1P20849 Y_RNA.206-201ENST00000364136 102 ntBASIC1.47□□□□□ -2.17
COL9A1P20849 RNU6-945P-201ENST00000383947 107 ntBASIC1.47□□□□□ -2.17
COL9A1P20849 SNORD111B-201ENST00000408587 80 ntBASIC1.47□□□□□ -2.17
COL9A1P20849 MIR125B1-201ENST00000385236 88 ntBASIC1.46□□□□□ -2.18
COL9A1P20849 RNU1-29P-201ENST00000606574 126 ntBASIC1.46□□□□□ -2.18
COL9A1P20849 SNORD45.2-201ENST00000363552 72 ntBASIC1.45□□□□□ -2.18
COL9A1P20849 MIR29B1-201ENST00000385015 81 ntBASIC1.45□□□□□ -2.18
COL9A1P20849 RNA5SP222-201ENST00000411039 105 ntBASIC1.45□□□□□ -2.18
COL9A1P20849 RNU6-458P-201ENST00000384179 107 ntBASIC1.44□□□□□ -2.18
COL9A1P20849 U6.58-201ENST00000613107 107 ntBASIC1.44□□□□□ -2.18
COL9A1P20849 AC010487.4-201ENST00000637027 61 ntBASIC1.44□□□□□ -2.18
COL9A1P20849 C9orf84-203ENST00000374287 4721 ntAPPRIS P3 TSL 5 BASIC1.43□□□□□ -2.18
COL9A1P20849 RNU6-598P-201ENST00000364017 105 ntBASIC1.43□□□□□ -2.18
COL9A1P20849 Y_RNA.345-201ENST00000365384 92 ntBASIC1.43□□□□□ -2.18
COL9A1P20849 RNU6-1326P-201ENST00000391262 107 ntBASIC1.43□□□□□ -2.18
COL9A1P20849 TFEC-204ENST00000457268 6309 ntTSL 3 BASIC1.43□□□□□ -2.18
COL9A1P20849 SNORD114-23-201ENST00000363536 72 ntBASIC1.42□□□□□ -2.18
COL9A1P20849 RNY1P8-201ENST00000383970 114 ntBASIC1.42□□□□□ -2.18
COL9A1P20849 HOTAIRM1_3.1-201ENST00000619974 59 ntBASIC1.42□□□□□ -2.18
COL9A1P20849 SNORA2A-201ENST00000383885 135 ntBASIC1.41□□□□□ -2.18
COL9A1P20849 MIRLET7B-201ENST00000385140 83 ntBASIC1.41□□□□□ -2.18
COL9A1P20849 MIR320A-201ENST00000385302 82 ntBASIC1.4□□□□□ -2.19
COL9A1P20849 SNORA49-201ENST00000386157 136 ntBASIC1.4□□□□□ -2.19
COL9A1P20849 AC069271.1-201ENST00000445577 156 ntBASIC1.4□□□□□ -2.19
COL9A1P20849 RNU7-188P-201ENST00000517063 64 ntBASIC1.4□□□□□ -2.19
COL9A1P20849 AL353765.1-201ENST00000605514 183 ntBASIC1.4□□□□□ -2.19
COL9A1P20849 U2.18-201ENST00000622185 84 ntBASIC1.4□□□□□ -2.19
COL9A1P20849 Y_RNA.139-201ENST00000363464 102 ntBASIC1.39□□□□□ -2.19
COL9A1P20849 RNA5SP331-201ENST00000364986 107 ntBASIC1.39□□□□□ -2.19
COL9A1P20849 RNU6-995P-201ENST00000391244 107 ntBASIC1.39□□□□□ -2.19
COL9A1P20849 RNA5SP517-201ENST00000364724 117 ntBASIC1.38□□□□□ -2.19
COL9A1P20849 MIR548AA1-201ENST00000384971 97 ntBASIC1.38□□□□□ -2.19
COL9A1P20849 MIR1197-201ENST00000408818 88 ntBASIC1.37□□□□□ -2.19
COL9A1P20849 RNU6-848P-201ENST00000515948 107 ntBASIC1.37□□□□□ -2.19
COL9A1P20849 RNU6-617P-201ENST00000516147 107 ntBASIC1.37□□□□□ -2.19
COL9A1P20849 RNU6-473P-201ENST00000516164 107 ntBASIC1.37□□□□□ -2.19
COL9A1P20849 RNU6-1049P-201ENST00000516414 107 ntBASIC1.37□□□□□ -2.19
COL9A1P20849 RNU6-229P-201ENST00000516614 102 ntBASIC1.37□□□□□ -2.19
COL9A1P20849 CEP290-201ENST00000309041 7616 ntAPPRIS ALT1 TSL 5 BASIC1.36□□□□□ -2.19
COL9A1P20849 MIR26B-201ENST00000362251 77 ntBASIC1.36□□□□□ -2.19
COL9A1P20849 RNU6-502P-201ENST00000362419 108 ntBASIC1.36□□□□□ -2.19
COL9A1P20849 TRAJ22-201ENST00000390515 63 ntAPPRIS P1 BASIC1.36□□□□□ -2.19
COL9A1P20849 CYP3A137P-201ENST00000562436 69 ntBASIC1.36□□□□□ -2.19
COL9A1P20849 AC211469.2-201ENST00000605461 205 ntBASIC1.36□□□□□ -2.19
COL9A1P20849 MIR4317-201ENST00000637586 65 ntBASIC1.36□□□□□ -2.19
COL9A1P20849 MIR330-201ENST00000362196 94 ntBASIC1.35□□□□□ -2.19
COL9A1P20849 RNU6-974P-201ENST00000384099 108 ntBASIC1.35□□□□□ -2.19
COL9A1P20849 MIR140-201ENST00000385282 100 ntBASIC1.35□□□□□ -2.19
COL9A1P20849 RNU6-175P-201ENST00000516896 107 ntBASIC1.35□□□□□ -2.19
COL9A1P20849 SNORD118-201ENST00000363593 134 ntBASIC1.34□□□□□ -2.19
COL9A1P20849 SNORA36.2-201ENST00000384004 127 ntBASIC1.34□□□□□ -2.19
COL9A1P20849 RNU6-782P-201ENST00000516852 104 ntBASIC1.34□□□□□ -2.19
COL9A1P20849 MIR3660-201ENST00000584845 100 ntBASIC1.34□□□□□ -2.19
COL9A1P20849 ZNF518A-210ENST00000624776 7994 ntAPPRIS P1 TSL 1 (best) BASIC1.34□□□□□ -2.2
COL9A1P20849 RNU6-939P-201ENST00000384634 107 ntBASIC1.33□□□□□ -2.2
COL9A1P20849 RNU6-1267P-201ENST00000410747 107 ntBASIC1.33□□□□□ -2.2
COL9A1P20849 AC087343.1-201ENST00000477341 475 ntBASIC1.33□□□□□ -2.2
COL9A1P20849 RNU6-1262P-201ENST00000516217 96 ntBASIC1.33□□□□□ -2.2
COL9A1P20849 RNU6-1047P-201ENST00000364418 107 ntBASIC1.32□□□□□ -2.2
COL9A1P20849 RNU6-997P-201ENST00000384725 107 ntBASIC1.32□□□□□ -2.2
COL9A1P20849 SNORA40.8-201ENST00000411034 126 ntBASIC1.32□□□□□ -2.2
Retrieved 100 of 98,524 protein–RNA pairs in 16.3 ms