Protein–RNA interactions for Protein: P20585

MSH3, DNA mismatch repair protein Msh3, humanhuman

Predictions only

Length 1,137 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH3P20585 Y_RNA.68-201ENST00000362881 102 ntBASIC-0.36□□□□□ -2.47
MSH3P20585 RNU6-242P-201ENST00000384359 107 ntBASIC-0.36□□□□□ -2.47
MSH3P20585 RNU6-1162P-201ENST00000384443 104 ntBASIC-0.36□□□□□ -2.47
MSH3P20585 MIR521-2-201ENST00000384818 87 ntBASIC-0.36□□□□□ -2.47
MSH3P20585 RNA5SP66-201ENST00000517178 101 ntBASIC-0.36□□□□□ -2.47
MSH3P20585 AC090617.8-201ENST00000623339 167 ntBASIC-0.36□□□□□ -2.47
MSH3P20585 Y_RNA.219-201ENST00000364232 113 ntBASIC-0.37□□□□□ -2.47
MSH3P20585 RNU6-1276P-201ENST00000365372 104 ntBASIC-0.37□□□□□ -2.47
MSH3P20585 RNU6-901P-201ENST00000384593 106 ntBASIC-0.37□□□□□ -2.47
MSH3P20585 RNU6-380P-201ENST00000410207 107 ntBASIC-0.37□□□□□ -2.47
MSH3P20585 RNU6-1133P-201ENST00000410963 100 ntBASIC-0.37□□□□□ -2.47
MSH3P20585 MIR4280-201ENST00000582178 76 ntBASIC-0.37□□□□□ -2.47
MSH3P20585 MIR3675-201ENST00000583661 73 ntBASIC-0.37□□□□□ -2.47
MSH3P20585 uc_338.36-201ENST00000622331 158 ntBASIC-0.37□□□□□ -2.47
MSH3P20585 AL391099.1-201ENST00000624635 187 ntBASIC-0.37□□□□□ -2.47
MSH3P20585 MIR1297-201ENST00000637311 77 ntBASIC-0.37□□□□□ -2.47
MSH3P20585 RNU6-1255P-201ENST00000363434 112 ntBASIC-0.38□□□□□ -2.47
MSH3P20585 SNORD115-23-201ENST00000364461 82 ntBASIC-0.38□□□□□ -2.47
MSH3P20585 Y_RNA.374-201ENST00000365606 101 ntBASIC-0.38□□□□□ -2.47
MSH3P20585 AC096531.1-201ENST00000419107 107 ntBASIC-0.38□□□□□ -2.47
MSH3P20585 AC062037.1-201ENST00000605302 128 ntBASIC-0.38□□□□□ -2.47
MSH3P20585 RNU6-807P-201ENST00000516805 107 ntBASIC-0.39□□□□□ -2.47
MSH3P20585 MIR4666B-201ENST00000578142 81 ntBASIC-0.39□□□□□ -2.47
MSH3P20585 Y_RNA.43-201ENST00000362670 111 ntBASIC-0.4□□□□□ -2.47
MSH3P20585 SNORD114-11-201ENST00000363738 75 ntBASIC-0.4□□□□□ -2.47
MSH3P20585 AL445193.1-201ENST00000441183 141 ntBASIC-0.4□□□□□ -2.47
MSH3P20585 RNU6-320P-201ENST00000516511 106 ntBASIC-0.4□□□□□ -2.47
MSH3P20585 CYP3A54P-201ENST00000566950 75 ntBASIC-0.4□□□□□ -2.47
MSH3P20585 MIR1245B-201ENST00000636115 69 ntBASIC-0.4□□□□□ -2.47
MSH3P20585 RNU6-1094P-201ENST00000362416 104 ntBASIC-0.41□□□□□ -2.48
MSH3P20585 SNORA8.1-201ENST00000384250 140 ntBASIC-0.41□□□□□ -2.48
MSH3P20585 RNU6-1152P-201ENST00000384576 107 ntBASIC-0.41□□□□□ -2.48
MSH3P20585 MIR4432-201ENST00000581823 84 ntBASIC-0.41□□□□□ -2.48
MSH3P20585 MIR4484-201ENST00000582855 83 ntBASIC-0.41□□□□□ -2.48
MSH3P20585 MIR4645-201ENST00000583158 77 ntBASIC-0.41□□□□□ -2.48
MSH3P20585 snoR1.1-201ENST00000628177 80 ntBASIC-0.41□□□□□ -2.48
MSH3P20585 AC093726.3-201ENST00000637588 150 ntBASIC-0.41□□□□□ -2.48
MSH3P20585 SNORD73B-201ENST00000364394 72 ntBASIC-0.42□□□□□ -2.48
MSH3P20585 Y_RNA.313-201ENST00000365095 103 ntBASIC-0.42□□□□□ -2.48
MSH3P20585 MIR5589-201ENST00000579442 60 ntBASIC-0.42□□□□□ -2.48
MSH3P20585 MIR4712-201ENST00000583750 82 ntBASIC-0.42□□□□□ -2.48
MSH3P20585 MIR8064-201ENST00000612863 90 ntBASIC-0.42□□□□□ -2.48
MSH3P20585 RNU6-787P-201ENST00000384032 107 ntBASIC-0.43□□□□□ -2.48
MSH3P20585 RNU6-656P-201ENST00000516785 107 ntBASIC-0.43□□□□□ -2.48
MSH3P20585 MIR5704-201ENST00000584029 77 ntBASIC-0.43□□□□□ -2.48
MSH3P20585 MIR6851-201ENST00000617060 67 ntBASIC-0.43□□□□□ -2.48
MSH3P20585 SNORD114-28-201ENST00000363610 72 ntBASIC-0.44□□□□□ -2.48
MSH3P20585 SNORD14C-201ENST00000365382 88 ntBASIC-0.44□□□□□ -2.48
MSH3P20585 MIR1255B2-201ENST00000408618 67 ntBASIC-0.44□□□□□ -2.48
MSH3P20585 RNA5SP470-201ENST00000516463 106 ntBASIC-0.44□□□□□ -2.48
MSH3P20585 Y_RNA.94-201ENST00000363068 106 ntBASIC-0.45□□□□□ -2.48
MSH3P20585 SNORD126-201ENST00000459475 77 ntBASIC-0.45□□□□□ -2.48
MSH3P20585 AC114755.3-201ENST00000481111 251 ntBASIC-0.45□□□□□ -2.48
MSH3P20585 MIR6854-201ENST00000614935 69 ntBASIC-0.45□□□□□ -2.48
MSH3P20585 SNORD45.1-201ENST00000363181 77 ntBASIC-0.46□□□□□ -2.48
MSH3P20585 RNA5SP275-201ENST00000363936 118 ntBASIC-0.46□□□□□ -2.48
MSH3P20585 RNU6-645P-201ENST00000364649 106 ntBASIC-0.46□□□□□ -2.48
MSH3P20585 Y_RNA.391-201ENST00000383933 94 ntBASIC-0.46□□□□□ -2.48
MSH3P20585 SNORD38.3-201ENST00000516599 73 ntBASIC-0.46□□□□□ -2.48
MSH3P20585 RNU6-604P-201ENST00000390917 100 ntBASIC-0.47□□□□□ -2.48
MSH3P20585 Y_RNA.696-201ENST00000516725 107 ntBASIC-0.47□□□□□ -2.48
MSH3P20585 MIR4802-201ENST00000581881 80 ntBASIC-0.47□□□□□ -2.48
MSH3P20585 AL353803.5-201ENST00000599815 141 ntBASIC-0.47□□□□□ -2.48
MSH3P20585 MIR8068-201ENST00000618032 68 ntBASIC-0.47□□□□□ -2.48
MSH3P20585 SNORA62.4-201ENST00000365504 151 ntBASIC-0.48□□□□□ -2.49
MSH3P20585 TRAJ53-201ENST00000390485 66 ntAPPRIS P1 BASIC-0.48□□□□□ -2.49
MSH3P20585 RNY4P29-201ENST00000410801 97 ntBASIC-0.48□□□□□ -2.49
MSH3P20585 MIR4636-201ENST00000582271 80 ntBASIC-0.48□□□□□ -2.49
MSH3P20585 AP001180.6-201ENST00000584918 159 ntBASIC-0.48□□□□□ -2.49
MSH3P20585 Y_RNA.433-201ENST00000384089 102 ntBASIC-0.49□□□□□ -2.49
MSH3P20585 MIR196A2-201ENST00000385189 110 ntBASIC-0.49□□□□□ -2.49
MSH3P20585 SCARNA18B-201ENST00000458806 135 ntBASIC-0.49□□□□□ -2.49
MSH3P20585 RNU6-881P-201ENST00000516813 102 ntBASIC-0.49□□□□□ -2.49
MSH3P20585 RNA5SP169-201ENST00000517268 117 ntBASIC-0.49□□□□□ -2.49
MSH3P20585 RNU6-1184P-201ENST00000384588 108 ntBASIC-0.5□□□□□ -2.49
MSH3P20585 SNORA26.2-201ENST00000390922 122 ntBASIC-0.5□□□□□ -2.49
MSH3P20585 RNU6ATAC29P-201ENST00000408088 125 ntBASIC-0.5□□□□□ -2.49
MSH3P20585 AL078612.1-201ENST00000533009 150 ntTSL 5 BASIC-0.5□□□□□ -2.49
MSH3P20585 RNU6-35P-201ENST00000384530 107 ntBASIC-0.51□□□□□ -2.49
MSH3P20585 MIR204-201ENST00000385200 110 ntBASIC-0.51□□□□□ -2.49
MSH3P20585 SNORA13-201ENST00000458790 133 ntBASIC-0.51□□□□□ -2.49
MSH3P20585 RNU6-982P-201ENST00000516216 102 ntBASIC-0.51□□□□□ -2.49
MSH3P20585 U2.7-201ENST00000619197 100 ntBASIC-0.51□□□□□ -2.49
MSH3P20585 MIR664A-201ENST00000626086 82 ntBASIC-0.51□□□□□ -2.49
MSH3P20585 SNORD115-22-201ENST00000364456 82 ntBASIC-0.52□□□□□ -2.49
MSH3P20585 Y_RNA.388-201ENST00000383919 113 ntBASIC-0.52□□□□□ -2.49
MSH3P20585 MIR519A2-201ENST00000384990 87 ntBASIC-0.52□□□□□ -2.49
MSH3P20585 MIR518B-201ENST00000385127 83 ntBASIC-0.52□□□□□ -2.49
MSH3P20585 AL021921.1-201ENST00000442774 93 ntBASIC-0.52□□□□□ -2.49
MSH3P20585 RNU7-154P-201ENST00000516194 62 ntBASIC-0.52□□□□□ -2.49
MSH3P20585 RNA5SP395-201ENST00000516567 118 ntBASIC-0.52□□□□□ -2.49
MSH3P20585 MIR4464-201ENST00000580818 92 ntBASIC-0.52□□□□□ -2.49
MSH3P20585 RNU6-284P-201ENST00000411105 106 ntBASIC-0.53□□□□□ -2.49
MSH3P20585 MIR8053-201ENST00000613344 75 ntBASIC-0.53□□□□□ -2.49
MSH3P20585 HOTAIRM1_3.1-201ENST00000619974 59 ntBASIC-0.53□□□□□ -2.49
MSH3P20585 SNORD74.6-201ENST00000364796 70 ntBASIC-0.54□□□□□ -2.5
MSH3P20585 RNA5SP173-201ENST00000364857 136 ntBASIC-0.54□□□□□ -2.5
MSH3P20585 Z95118.1-201ENST00000421372 247 ntBASIC-0.54□□□□□ -2.5
MSH3P20585 RNU6-518P-201ENST00000516056 96 ntBASIC-0.54□□□□□ -2.5
MSH3P20585 MIR3202-2-201ENST00000635980 79 ntBASIC-0.54□□□□□ -2.5
Retrieved 100 of 98,524 protein–RNA pairs in 203 ms