Protein–RNA interactions for Protein: A6NC98

CCDC88B, Coiled-coil domain-containing protein 88B, humanhuman

Predictions only

Length 1,476 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88BA6NC98 Y_RNA.496-201ENST00000384444 101 ntBASIC-4.53□□□□□ -3.13
CCDC88BA6NC98 AL160413.1-201ENST00000622780 310 ntBASIC-4.53□□□□□ -3.13
CCDC88BA6NC98 RNU6-737P-201ENST00000365370 107 ntBASIC-4.54□□□□□ -3.14
CCDC88BA6NC98 RNU6-1042P-201ENST00000384204 107 ntBASIC-4.54□□□□□ -3.14
CCDC88BA6NC98 SNORA41B-201ENST00000384785 128 ntBASIC-4.54□□□□□ -3.14
CCDC88BA6NC98 Y_RNA.635-201ENST00000459041 101 ntBASIC-4.54□□□□□ -3.14
CCDC88BA6NC98 Y_RNA.435-201ENST00000384095 112 ntBASIC-4.55□□□□□ -3.14
CCDC88BA6NC98 Y_RNA.563-201ENST00000384707 108 ntBASIC-4.55□□□□□ -3.14
CCDC88BA6NC98 RNU6-982P-201ENST00000516216 102 ntBASIC-4.55□□□□□ -3.14
CCDC88BA6NC98 RNY3P16-201ENST00000516338 101 ntBASIC-4.55□□□□□ -3.14
CCDC88BA6NC98 MIR3149-201ENST00000584629 83 ntBASIC-4.55□□□□□ -3.14
CCDC88BA6NC98 DLEU2_1.1-201ENST00000612089 120 ntBASIC-4.55□□□□□ -3.14
CCDC88BA6NC98 RNU6-172P-201ENST00000411000 93 ntBASIC-4.56□□□□□ -3.14
CCDC88BA6NC98 MTND4P17-201ENST00000470444 350 ntBASIC-4.56□□□□□ -3.14
CCDC88BA6NC98 MIAT_exon5_2.1-201ENST00000613562 85 ntBASIC-4.56□□□□□ -3.14
CCDC88BA6NC98 ABCA9-AS1-203ENST00000627596 426 ntTSL 5 BASIC-4.56□□□□□ -3.14
CCDC88BA6NC98 Y_RNA.95-201ENST00000363079 95 ntBASIC-4.56□□□□□ -3.14
CCDC88BA6NC98 MTND1P19-201ENST00000511780 315 ntBASIC-4.56□□□□□ -3.14
CCDC88BA6NC98 RNU4-11P-201ENST00000365287 132 ntBASIC-4.57□□□□□ -3.14
CCDC88BA6NC98 MIR1236-201ENST00000408340 102 ntBASIC-4.57□□□□□ -3.14
CCDC88BA6NC98 RNU6-1047P-201ENST00000364418 107 ntBASIC-4.58□□□□□ -3.14
CCDC88BA6NC98 MIR548P-201ENST00000408336 84 ntBASIC-4.58□□□□□ -3.14
CCDC88BA6NC98 RNU6-1338P-201ENST00000516328 91 ntBASIC-4.58□□□□□ -3.14
CCDC88BA6NC98 AC009094.1-201ENST00000564443 426 ntBASIC-4.58□□□□□ -3.14
CCDC88BA6NC98 MIR3121-201ENST00000579680 77 ntBASIC-4.58□□□□□ -3.14
CCDC88BA6NC98 RNY3P2-201ENST00000362918 102 ntBASIC-4.59□□□□□ -3.14
CCDC88BA6NC98 AC109635.3-201ENST00000529536 185 ntBASIC-4.59□□□□□ -3.14
CCDC88BA6NC98 Y_RNA.337-201ENST00000365312 102 ntBASIC-4.6□□□□□ -3.15
CCDC88BA6NC98 SNORD77.2-201ENST00000391045 68 ntBASIC-4.6□□□□□ -3.15
CCDC88BA6NC98 RNU6-275P-201ENST00000364910 107 ntBASIC-4.61□□□□□ -3.15
CCDC88BA6NC98 SNORD11.1-201ENST00000459482 85 ntBASIC-4.61□□□□□ -3.15
CCDC88BA6NC98 RNU6-176P-201ENST00000517196 105 ntBASIC-4.61□□□□□ -3.15
CCDC88BA6NC98 MIR3675-201ENST00000583661 73 ntBASIC-4.61□□□□□ -3.15
CCDC88BA6NC98 MIR4282-201ENST00000583613 67 ntBASIC-4.62□□□□□ -3.15
CCDC88BA6NC98 Y_RNA.158-201ENST00000363651 101 ntBASIC-4.62□□□□□ -3.15
CCDC88BA6NC98 RNU6-493P-201ENST00000391321 108 ntBASIC-4.62□□□□□ -3.15
CCDC88BA6NC98 Y_RNA.29-201ENST00000362570 113 ntBASIC-4.63□□□□□ -3.15
CCDC88BA6NC98 Y_RNA.137-201ENST00000363455 112 ntBASIC-4.63□□□□□ -3.15
CCDC88BA6NC98 SNORA63.7-201ENST00000365579 123 ntBASIC-4.63□□□□□ -3.15
CCDC88BA6NC98 RNU7-153P-201ENST00000516455 62 ntBASIC-4.63□□□□□ -3.15
CCDC88BA6NC98 RNU7-30P-201ENST00000516835 62 ntBASIC-4.63□□□□□ -3.15
CCDC88BA6NC98 Y_RNA.11-201ENST00000362375 109 ntBASIC-4.64□□□□□ -3.15
CCDC88BA6NC98 RNA5SP215-201ENST00000363440 122 ntBASIC-4.64□□□□□ -3.15
CCDC88BA6NC98 RNU6-129P-201ENST00000391022 107 ntBASIC-4.64□□□□□ -3.15
CCDC88BA6NC98 AC078883.4-201ENST00000623218 367 ntBASIC-4.65□□□□□ -3.15
CCDC88BA6NC98 RNY3P15-201ENST00000516297 97 ntBASIC-4.66□□□□□ -3.16
CCDC88BA6NC98 SNORA40.15-201ENST00000516884 107 ntBASIC-4.66□□□□□ -3.16
CCDC88BA6NC98 Y_RNA.309-201ENST00000365046 111 ntBASIC-4.67□□□□□ -3.16
CCDC88BA6NC98 SNORD58A-201ENST00000383875 65 ntBASIC-4.67□□□□□ -3.16
CCDC88BA6NC98 Y_RNA.384-201ENST00000383909 102 ntBASIC-4.67□□□□□ -3.16
CCDC88BA6NC98 RNU6-665P-201ENST00000384639 107 ntBASIC-4.67□□□□□ -3.16
CCDC88BA6NC98 SNORD37.2-201ENST00000391075 66 ntBASIC-4.67□□□□□ -3.16
CCDC88BA6NC98 RNU6-314P-201ENST00000516574 104 ntBASIC-4.67□□□□□ -3.16
CCDC88BA6NC98 AL603755.1-201ENST00000619504 163 ntBASIC-4.67□□□□□ -3.16
CCDC88BA6NC98 SNORD45.1-201ENST00000363181 77 ntBASIC-4.68□□□□□ -3.16
CCDC88BA6NC98 RNU6-590P-201ENST00000365039 107 ntBASIC-4.68□□□□□ -3.16
CCDC88BA6NC98 Y_RNA.320-201ENST00000365144 102 ntBASIC-4.68□□□□□ -3.16
CCDC88BA6NC98 SNORA40.4-201ENST00000390971 128 ntBASIC-4.68□□□□□ -3.16
CCDC88BA6NC98 DEFB108C-201ENST00000400154 252 ntBASIC-4.68□□□□□ -3.16
CCDC88BA6NC98 Y_RNA.166-201ENST00000363730 102 ntBASIC-4.69□□□□□ -3.16
CCDC88BA6NC98 Y_RNA.84-201ENST00000363011 104 ntBASIC-4.69□□□□□ -3.16
CCDC88BA6NC98 Y_RNA.649-201ENST00000459077 103 ntBASIC-4.69□□□□□ -3.16
CCDC88BA6NC98 RNU6-300P-201ENST00000459080 104 ntBASIC-4.69□□□□□ -3.16
CCDC88BA6NC98 AC006362.1-201ENST00000567392 174 ntBASIC-4.69□□□□□ -3.16
CCDC88BA6NC98 Y_RNA.19-201ENST00000362462 99 ntBASIC-4.7□□□□□ -3.16
CCDC88BA6NC98 Y_RNA.89-201ENST00000363031 102 ntBASIC-4.7□□□□□ -3.16
CCDC88BA6NC98 MTND4LP1-201ENST00000446263 157 ntBASIC-4.7□□□□□ -3.16
CCDC88BA6NC98 RNU6-1153P-201ENST00000516760 105 ntBASIC-4.7□□□□□ -3.16
CCDC88BA6NC98 MIR4777-201ENST00000583710 86 ntBASIC-4.7□□□□□ -3.16
CCDC88BA6NC98 Y_RNA.264-201ENST00000364665 102 ntBASIC-4.71□□□□□ -3.16
CCDC88BA6NC98 RNA5SP173-201ENST00000364857 136 ntBASIC-4.71□□□□□ -3.16
CCDC88BA6NC98 RNU6-639P-201ENST00000384074 107 ntBASIC-4.71□□□□□ -3.16
CCDC88BA6NC98 MIR1302-11-201ENST00000408051 138 ntBASIC-4.71□□□□□ -3.16
CCDC88BA6NC98 MIR1302-9-201ENST00000408365 138 ntBASIC-4.71□□□□□ -3.16
CCDC88BA6NC98 MIR1302-10-201ENST00000408734 138 ntBASIC-4.71□□□□□ -3.16
CCDC88BA6NC98 MIR1302-2-201ENST00000607096 138 ntBASIC-4.71□□□□□ -3.16
CCDC88BA6NC98 RNU6-806P-201ENST00000365147 105 ntBASIC-4.72□□□□□ -3.16
CCDC88BA6NC98 RNU6-604P-201ENST00000390917 100 ntBASIC-4.72□□□□□ -3.16
CCDC88BA6NC98 RNU7-160P-201ENST00000516660 62 ntBASIC-4.72□□□□□ -3.16
CCDC88BA6NC98 MIR3658-201ENST00000636291 56 ntBASIC-4.72□□□□□ -3.16
CCDC88BA6NC98 SNORD115-45-201ENST00000391078 81 ntBASIC-4.74□□□□□ -3.17
CCDC88BA6NC98 RNU6-554P-201ENST00000410466 106 ntBASIC-4.74□□□□□ -3.17
CCDC88BA6NC98 Y_RNA.609-201ENST00000410669 89 ntBASIC-4.74□□□□□ -3.17
CCDC88BA6NC98 RNU6-1161P-201ENST00000516176 102 ntBASIC-4.74□□□□□ -3.17
CCDC88BA6NC98 Y_RNA.553-201ENST00000384670 102 ntBASIC-4.75□□□□□ -3.17
CCDC88BA6NC98 RNU6-1108P-201ENST00000516308 104 ntBASIC-4.75□□□□□ -3.17
CCDC88BA6NC98 RNU6-795P-201ENST00000516323 103 ntBASIC-4.75□□□□□ -3.17
CCDC88BA6NC98 MIR4426-201ENST00000640330 63 ntBASIC-4.75□□□□□ -3.17
CCDC88BA6NC98 RNU6-330P-201ENST00000363015 107 ntBASIC-4.75□□□□□ -3.17
CCDC88BA6NC98 RNU6-1169P-201ENST00000363537 103 ntBASIC-4.75□□□□□ -3.17
CCDC88BA6NC98 Y_RNA.252-201ENST00000364556 101 ntBASIC-4.75□□□□□ -3.17
CCDC88BA6NC98 MIR620-201ENST00000385232 95 ntBASIC-4.75□□□□□ -3.17
CCDC88BA6NC98 MTND5P22-201ENST00000458380 195 ntBASIC-4.75□□□□□ -3.17
CCDC88BA6NC98 SNORD127-201ENST00000458892 86 ntBASIC-4.75□□□□□ -3.17
CCDC88BA6NC98 MTND4LP32-201ENST00000636111 270 ntBASIC-4.75□□□□□ -3.17
CCDC88BA6NC98 RNY4P14-201ENST00000363656 96 ntBASIC-4.76□□□□□ -3.17
CCDC88BA6NC98 Y_RNA.292-201ENST00000364904 97 ntBASIC-4.76□□□□□ -3.17
CCDC88BA6NC98 ST7-OT3_3.1-201ENST00000611709 115 ntBASIC-4.76□□□□□ -3.17
CCDC88BA6NC98 Y_RNA.240-201ENST00000364469 95 ntBASIC-4.77□□□□□ -3.17
CCDC88BA6NC98 Y_RNA.26-201ENST00000362539 101 ntBASIC-4.78□□□□□ -3.17
Retrieved 100 of 98,524 protein–RNA pairs in 189.5 ms