Protein–RNA interactions for Protein: Q9Y2B5

VPS9D1, VPS9 domain-containing protein 1, humanhuman

Predictions only

Length 631 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS9D1Q9Y2B5 SNORD13-201ENST00000459299 104 ntBASIC1.66□□□□□ -2.14
VPS9D1Q9Y2B5 RNU6-598P-201ENST00000364017 105 ntBASIC1.65□□□□□ -2.15
VPS9D1Q9Y2B5 MIR19B1-201ENST00000384829 87 ntBASIC1.65□□□□□ -2.15
VPS9D1Q9Y2B5 TDRD15-202ENST00000622654 5805 ntAPPRIS P1 BASIC1.64□□□□□ -2.15
VPS9D1Q9Y2B5 SNORD114-29-201ENST00000364819 70 ntBASIC1.63□□□□□ -2.15
VPS9D1Q9Y2B5 Y_RNA.338-201ENST00000365320 114 ntBASIC1.63□□□□□ -2.15
VPS9D1Q9Y2B5 RNU4-45P-201ENST00000365469 141 ntBASIC1.63□□□□□ -2.15
VPS9D1Q9Y2B5 RNY1P8-201ENST00000383970 114 ntBASIC1.63□□□□□ -2.15
VPS9D1Q9Y2B5 RNU6ATAC2P-201ENST00000387943 126 ntBASIC1.63□□□□□ -2.15
VPS9D1Q9Y2B5 RNA5SP94-201ENST00000516917 108 ntBASIC1.63□□□□□ -2.15
VPS9D1Q9Y2B5 MIR4752-201ENST00000579672 72 ntBASIC1.63□□□□□ -2.15
VPS9D1Q9Y2B5 HOTAIRM1_3.1-201ENST00000619974 59 ntBASIC1.63□□□□□ -2.15
VPS9D1Q9Y2B5 U2.18-201ENST00000622185 84 ntBASIC1.63□□□□□ -2.15
VPS9D1Q9Y2B5 RNU6-1204P-201ENST00000363948 107 ntBASIC1.62□□□□□ -2.15
VPS9D1Q9Y2B5 RNA5SP190-201ENST00000365222 118 ntBASIC1.62□□□□□ -2.15
VPS9D1Q9Y2B5 SNORD124-201ENST00000459577 104 ntBASIC1.62□□□□□ -2.15
VPS9D1Q9Y2B5 SNORA25.15-201ENST00000516487 89 ntBASIC1.62□□□□□ -2.15
VPS9D1Q9Y2B5 MIR5706-201ENST00000579841 80 ntBASIC1.62□□□□□ -2.15
VPS9D1Q9Y2B5 RNU6-828P-201ENST00000364876 107 ntBASIC1.61□□□□□ -2.15
VPS9D1Q9Y2B5 RNA5SP363-201ENST00000365072 115 ntBASIC1.61□□□□□ -2.15
VPS9D1Q9Y2B5 IL6ST-202ENST00000381286 201 ntTSL 1 (best) BASIC1.61□□□□□ -2.15
VPS9D1Q9Y2B5 MIRLET7B-201ENST00000385140 83 ntBASIC1.61□□□□□ -2.15
VPS9D1Q9Y2B5 AL451105.1-201ENST00000450005 189 ntBASIC1.61□□□□□ -2.15
VPS9D1Q9Y2B5 AC011195.1-201ENST00000578177 177 ntBASIC1.61□□□□□ -2.15
VPS9D1Q9Y2B5 MIR4285-201ENST00000581001 85 ntBASIC1.61□□□□□ -2.15
VPS9D1Q9Y2B5 C9orf84-203ENST00000374287 4721 ntAPPRIS P3 TSL 5 BASIC1.61□□□□□ -2.15
VPS9D1Q9Y2B5 RNU6-995P-201ENST00000391244 107 ntBASIC1.6□□□□□ -2.15
VPS9D1Q9Y2B5 Y_RNA.676-201ENST00000516393 96 ntBASIC1.6□□□□□ -2.15
VPS9D1Q9Y2B5 Y_RNA.164-201ENST00000363709 102 ntBASIC1.59□□□□□ -2.15
VPS9D1Q9Y2B5 SNORA49-201ENST00000386157 136 ntBASIC1.59□□□□□ -2.15
VPS9D1Q9Y2B5 U6.103-201ENST00000637085 61 ntBASIC1.59□□□□□ -2.15
VPS9D1Q9Y2B5 RNU6-997P-201ENST00000384725 107 ntBASIC1.58□□□□□ -2.16
VPS9D1Q9Y2B5 MIR4303-201ENST00000581299 66 ntBASIC1.58□□□□□ -2.16
VPS9D1Q9Y2B5 MIR548AA1-201ENST00000384971 97 ntBASIC1.57□□□□□ -2.16
VPS9D1Q9Y2B5 RNU6-782P-201ENST00000516852 104 ntBASIC1.57□□□□□ -2.16
VPS9D1Q9Y2B5 BX248123.2-201ENST00000606318 124 ntBASIC1.57□□□□□ -2.16
VPS9D1Q9Y2B5 SNORD99-201ENST00000408612 74 ntBASIC1.56□□□□□ -2.16
VPS9D1Q9Y2B5 RNU4-62P-201ENST00000410125 130 ntBASIC1.56□□□□□ -2.16
VPS9D1Q9Y2B5 MIR4498-201ENST00000577599 66 ntBASIC1.56□□□□□ -2.16
VPS9D1Q9Y2B5 RNU6-822P-201ENST00000362707 106 ntBASIC1.55□□□□□ -2.16
VPS9D1Q9Y2B5 RNU6-945P-201ENST00000383947 107 ntBASIC1.55□□□□□ -2.16
VPS9D1Q9Y2B5 MIR125B1-201ENST00000385236 88 ntBASIC1.55□□□□□ -2.16
VPS9D1Q9Y2B5 RNA5SP255-201ENST00000516370 107 ntBASIC1.55□□□□□ -2.16
VPS9D1Q9Y2B5 RNU7-188P-201ENST00000517063 64 ntBASIC1.55□□□□□ -2.16
VPS9D1Q9Y2B5 RNU1-29P-201ENST00000606574 126 ntBASIC1.55□□□□□ -2.16
VPS9D1Q9Y2B5 RNU6-502P-201ENST00000362419 108 ntBASIC1.54□□□□□ -2.16
VPS9D1Q9Y2B5 SNORD53B-201ENST00000577887 78 ntBASIC1.54□□□□□ -2.16
VPS9D1Q9Y2B5 SNORD45.2-201ENST00000363552 72 ntBASIC1.53□□□□□ -2.16
VPS9D1Q9Y2B5 SNORD114-24-201ENST00000365029 72 ntBASIC1.53□□□□□ -2.16
VPS9D1Q9Y2B5 AL354695.1-201ENST00000427935 228 ntBASIC1.53□□□□□ -2.16
VPS9D1Q9Y2B5 RNU6-1262P-201ENST00000516217 96 ntBASIC1.53□□□□□ -2.16
VPS9D1Q9Y2B5 SNORA67.5-201ENST00000391036 107 ntBASIC1.52□□□□□ -2.17
VPS9D1Q9Y2B5 RNU6-721P-201ENST00000410155 105 ntBASIC1.52□□□□□ -2.17
VPS9D1Q9Y2B5 AL353803.5-201ENST00000599815 141 ntBASIC1.52□□□□□ -2.17
VPS9D1Q9Y2B5 U7.6-201ENST00000610841 64 ntBASIC1.52□□□□□ -2.17
VPS9D1Q9Y2B5 MIR378A-201ENST00000362177 66 ntBASIC1.51□□□□□ -2.17
VPS9D1Q9Y2B5 RNU6-742P-201ENST00000365289 107 ntBASIC1.51□□□□□ -2.17
VPS9D1Q9Y2B5 RNA5SP247-201ENST00000411181 105 ntBASIC1.51□□□□□ -2.17
VPS9D1Q9Y2B5 RNU6-1053P-201ENST00000515930 101 ntBASIC1.51□□□□□ -2.17
VPS9D1Q9Y2B5 RNU6-175P-201ENST00000516896 107 ntBASIC1.51□□□□□ -2.17
VPS9D1Q9Y2B5 snoU13.31-201ENST00000607291 104 ntBASIC1.51□□□□□ -2.17
VPS9D1Q9Y2B5 SNORA67.6-201ENST00000391093 99 ntBASIC1.5□□□□□ -2.17
VPS9D1Q9Y2B5 SNORA31.24-201ENST00000517232 57 ntBASIC1.5□□□□□ -2.17
VPS9D1Q9Y2B5 MIR618-201ENST00000385287 98 ntBASIC1.49□□□□□ -2.17
VPS9D1Q9Y2B5 MIR1304-201ENST00000408243 91 ntBASIC1.49□□□□□ -2.17
VPS9D1Q9Y2B5 AP1B1P2-201ENST00000416196 106 ntBASIC1.49□□□□□ -2.17
VPS9D1Q9Y2B5 AC069271.1-201ENST00000445577 156 ntBASIC1.49□□□□□ -2.17
VPS9D1Q9Y2B5 Y_RNA.139-201ENST00000363464 102 ntBASIC1.48□□□□□ -2.17
VPS9D1Q9Y2B5 MIR320A-201ENST00000385302 82 ntBASIC1.48□□□□□ -2.17
VPS9D1Q9Y2B5 RNU6-1036P-201ENST00000383959 104 ntBASIC1.47□□□□□ -2.17
VPS9D1Q9Y2B5 RNU6-1267P-201ENST00000410747 107 ntBASIC1.47□□□□□ -2.17
VPS9D1Q9Y2B5 RNU6-321P-201ENST00000410912 106 ntBASIC1.47□□□□□ -2.17
VPS9D1Q9Y2B5 RNA5SP222-201ENST00000411039 105 ntBASIC1.47□□□□□ -2.17
VPS9D1Q9Y2B5 AC108676.2-201ENST00000605225 163 ntBASIC1.47□□□□□ -2.17
VPS9D1Q9Y2B5 DENND4A-209ENST00000635620 5887 ntTSL 5 BASIC1.47□□□□□ -2.17
VPS9D1Q9Y2B5 JMJD1C-212ENST00000639129 7901 ntAPPRIS ALT2 TSL 5 BASIC1.47□□□□□ -2.17
VPS9D1Q9Y2B5 ZGRF1-208ENST00000505019 6652 ntAPPRIS P1 TSL 5 BASIC1.46□□□□□ -2.18
VPS9D1Q9Y2B5 RNU1-42P-201ENST00000364033 160 ntBASIC1.46□□□□□ -2.18
VPS9D1Q9Y2B5 SNORA2A-201ENST00000383885 135 ntBASIC1.45□□□□□ -2.18
VPS9D1Q9Y2B5 RNU7-95P-201ENST00000459222 64 ntBASIC1.45□□□□□ -2.18
VPS9D1Q9Y2B5 AC092892.1-201ENST00000496067 327 ntTSL 5 BASIC1.45□□□□□ -2.18
VPS9D1Q9Y2B5 Y_RNA.226-201ENST00000364337 114 ntBASIC1.44□□□□□ -2.18
VPS9D1Q9Y2B5 MIR1323-201ENST00000408090 73 ntBASIC1.44□□□□□ -2.18
VPS9D1Q9Y2B5 RNU6-229P-201ENST00000516614 102 ntBASIC1.44□□□□□ -2.18
VPS9D1Q9Y2B5 MIR4432-201ENST00000581823 84 ntBASIC1.44□□□□□ -2.18
VPS9D1Q9Y2B5 RNU1-124P-201ENST00000363861 145 ntBASIC1.42□□□□□ -2.18
VPS9D1Q9Y2B5 RNA5SP517-201ENST00000364724 117 ntBASIC1.42□□□□□ -2.18
VPS9D1Q9Y2B5 RNU6-955P-201ENST00000410497 104 ntBASIC1.42□□□□□ -2.18
VPS9D1Q9Y2B5 SNORD115-23-201ENST00000364461 82 ntBASIC1.41□□□□□ -2.18
VPS9D1Q9Y2B5 MIR29B1-201ENST00000385015 81 ntBASIC1.41□□□□□ -2.18
VPS9D1Q9Y2B5 SNORD57-201ENST00000448188 72 ntBASIC1.41□□□□□ -2.18
VPS9D1Q9Y2B5 AC084368.1-201ENST00000620935 65 ntBASIC1.41□□□□□ -2.18
VPS9D1Q9Y2B5 ABCA5-201ENST00000392676 8220 ntAPPRIS P1 TSL 1 (best) BASIC1.4□□□□□ -2.18
VPS9D1Q9Y2B5 RNU6-1008P-201ENST00000384160 104 ntBASIC1.4□□□□□ -2.19
VPS9D1Q9Y2B5 RPS29P23-201ENST00000458635 123 ntBASIC1.4□□□□□ -2.19
VPS9D1Q9Y2B5 AC008883.1-201ENST00000506562 193 ntTSL 3 BASIC1.4□□□□□ -2.19
VPS9D1Q9Y2B5 RNA5SP404-201ENST00000517118 132 ntBASIC1.4□□□□□ -2.19
VPS9D1Q9Y2B5 MIR4677-201ENST00000584153 80 ntBASIC1.4□□□□□ -2.19
VPS9D1Q9Y2B5 RNU6-974P-201ENST00000384099 108 ntBASIC1.39□□□□□ -2.19
VPS9D1Q9Y2B5 SNORD26-201ENST00000384147 75 ntBASIC1.39□□□□□ -2.19
Retrieved 100 of 98,524 protein–RNA pairs in 261 ms