Protein–RNA interactions for Protein: Q99801

NKX3-1, Homeobox protein Nkx-3.1, humanhuman

Predicted RBP Predictions only

Length 234 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NKX3-1Q99801 Y_RNA.433-201ENST00000384089 102 ntBASIC-0.37□□□□□ -2.47
NKX3-1Q99801 MIR203A-201ENST00000384836 110 ntBASIC-0.37□□□□□ -2.47
NKX3-1Q99801 Y_RNA.620-201ENST00000411009 88 ntBASIC-0.37□□□□□ -2.47
NKX3-1Q99801 AP001180.6-201ENST00000584918 159 ntBASIC-0.37□□□□□ -2.47
NKX3-1Q99801 AC006254.2-201ENST00000603259 279 ntBASIC-0.37□□□□□ -2.47
NKX3-1Q99801 MIR4788-201ENST00000639104 80 ntBASIC-0.37□□□□□ -2.47
NKX3-1Q99801 RNU6-502P-201ENST00000362419 108 ntBASIC-0.38□□□□□ -2.47
NKX3-1Q99801 RNU6-219P-201ENST00000364728 107 ntBASIC-0.38□□□□□ -2.47
NKX3-1Q99801 SNORA63.6-201ENST00000364921 119 ntBASIC-0.38□□□□□ -2.47
NKX3-1Q99801 RNU6-900P-201ENST00000384498 102 ntBASIC-0.38□□□□□ -2.47
NKX3-1Q99801 hsa-mir-4536-1.1-201ENST00000636519 88 ntBASIC-0.38□□□□□ -2.47
NKX3-1Q99801 Y_RNA.178-201ENST00000363832 102 ntBASIC-0.39□□□□□ -2.47
NKX3-1Q99801 RNU6-1039P-201ENST00000383931 107 ntBASIC-0.39□□□□□ -2.47
NKX3-1Q99801 SNORD116-22-201ENST00000384430 92 ntBASIC-0.39□□□□□ -2.47
NKX3-1Q99801 SNORD2-201ENST00000459163 69 ntBASIC-0.39□□□□□ -2.47
NKX3-1Q99801 U6.81-201ENST00000612550 106 ntBASIC-0.39□□□□□ -2.47
NKX3-1Q99801 DLEU2_3.2-201ENST00000612883 73 ntBASIC-0.39□□□□□ -2.47
NKX3-1Q99801 uc_338.36-201ENST00000622331 158 ntBASIC-0.39□□□□□ -2.47
NKX3-1Q99801 Y_RNA.371-201ENST00000365591 113 ntBASIC-0.4□□□□□ -2.47
NKX3-1Q99801 RNU6-260P-201ENST00000384092 107 ntBASIC-0.4□□□□□ -2.47
NKX3-1Q99801 SNORD56B-201ENST00000384713 71 ntBASIC-0.4□□□□□ -2.47
NKX3-1Q99801 TRAJ28-201ENST00000390509 66 ntAPPRIS P1 BASIC-0.4□□□□□ -2.47
NKX3-1Q99801 RNA5SP89-201ENST00000410300 108 ntBASIC-0.4□□□□□ -2.47
NKX3-1Q99801 RNU7-55P-201ENST00000459426 62 ntBASIC-0.4□□□□□ -2.47
NKX3-1Q99801 RNU6-320P-201ENST00000516511 106 ntBASIC-0.4□□□□□ -2.47
NKX3-1Q99801 MIR4645-201ENST00000583158 77 ntBASIC-0.4□□□□□ -2.47
NKX3-1Q99801 MIR4263-201ENST00000584745 83 ntBASIC-0.4□□□□□ -2.47
NKX3-1Q99801 SNORD114-28-201ENST00000363610 72 ntBASIC-0.41□□□□□ -2.48
NKX3-1Q99801 SNORD114-11-201ENST00000363738 75 ntBASIC-0.41□□□□□ -2.48
NKX3-1Q99801 AL450471.1-201ENST00000447509 127 ntBASIC-0.41□□□□□ -2.48
NKX3-1Q99801 RNU6-168P-201ENST00000516189 101 ntBASIC-0.41□□□□□ -2.48
NKX3-1Q99801 RNA5SP147-201ENST00000516493 109 ntBASIC-0.41□□□□□ -2.48
NKX3-1Q99801 MIR6509-201ENST00000614603 85 ntBASIC-0.41□□□□□ -2.48
NKX3-1Q99801 RNU6-337P-201ENST00000391243 106 ntBASIC-0.42□□□□□ -2.48
NKX3-1Q99801 AL445193.1-201ENST00000441183 141 ntBASIC-0.42□□□□□ -2.48
NKX3-1Q99801 AL691482.2-201ENST00000457453 84 ntBASIC-0.42□□□□□ -2.48
NKX3-1Q99801 AC021146.9-201ENST00000512503 156 ntBASIC-0.42□□□□□ -2.48
NKX3-1Q99801 RNA5SP395-201ENST00000516567 118 ntBASIC-0.42□□□□□ -2.48
NKX3-1Q99801 MIR6773-201ENST00000612812 74 ntBASIC-0.42□□□□□ -2.48
NKX3-1Q99801 RNU6-208P-201ENST00000362431 107 ntBASIC-0.43□□□□□ -2.48
NKX3-1Q99801 RNU6-497P-201ENST00000365316 104 ntBASIC-0.43□□□□□ -2.48
NKX3-1Q99801 MIR1265-201ENST00000408444 86 ntBASIC-0.43□□□□□ -2.48
NKX3-1Q99801 Y_RNA.633-201ENST00000459107 95 ntBASIC-0.43□□□□□ -2.48
NKX3-1Q99801 AC093729.1-201ENST00000513074 128 ntBASIC-0.43□□□□□ -2.48
NKX3-1Q99801 RNU6-1108P-201ENST00000516308 104 ntBASIC-0.43□□□□□ -2.48
NKX3-1Q99801 MIR4493-201ENST00000584016 73 ntBASIC-0.43□□□□□ -2.48
NKX3-1Q99801 UBL4A-207ENST00000630530 102 ntTSL 5 BASIC-0.43□□□□□ -2.48
NKX3-1Q99801 SNORD115-37-201ENST00000363768 82 ntBASIC-0.44□□□□□ -2.48
NKX3-1Q99801 Y_RNA.220-201ENST00000364244 109 ntBASIC-0.44□□□□□ -2.48
NKX3-1Q99801 RNU6-1131P-201ENST00000364955 107 ntBASIC-0.44□□□□□ -2.48
NKX3-1Q99801 Y_RNA.606-201ENST00000410579 103 ntBASIC-0.44□□□□□ -2.48
NKX3-1Q99801 RNA5SP66-201ENST00000517178 101 ntBASIC-0.44□□□□□ -2.48
NKX3-1Q99801 MIR4280-201ENST00000582178 76 ntBASIC-0.44□□□□□ -2.48
NKX3-1Q99801 MIR3657-201ENST00000584818 117 ntBASIC-0.44□□□□□ -2.48
NKX3-1Q99801 AC090617.8-201ENST00000623339 167 ntBASIC-0.44□□□□□ -2.48
NKX3-1Q99801 MIR548BB-201ENST00000626714 66 ntBASIC-0.44□□□□□ -2.48
NKX3-1Q99801 RNA5SP275-201ENST00000363936 118 ntBASIC-0.45□□□□□ -2.48
NKX3-1Q99801 RNU6-340P-201ENST00000364005 107 ntBASIC-0.45□□□□□ -2.48
NKX3-1Q99801 RNU6-153P-201ENST00000364422 104 ntBASIC-0.45□□□□□ -2.48
NKX3-1Q99801 RNU6-49P-201ENST00000384256 107 ntBASIC-0.45□□□□□ -2.48
NKX3-1Q99801 RNU6-901P-201ENST00000384593 106 ntBASIC-0.45□□□□□ -2.48
NKX3-1Q99801 RNU6-274P-201ENST00000459566 107 ntBASIC-0.45□□□□□ -2.48
NKX3-1Q99801 AC008883.1-201ENST00000506562 193 ntTSL 3 BASIC-0.45□□□□□ -2.48
NKX3-1Q99801 MIR8064-201ENST00000612863 90 ntBASIC-0.45□□□□□ -2.48
NKX3-1Q99801 SNORD77.2-201ENST00000391045 68 ntBASIC-0.46□□□□□ -2.48
NKX3-1Q99801 RNU6-592P-201ENST00000411333 103 ntBASIC-0.46□□□□□ -2.48
NKX3-1Q99801 AC096531.1-201ENST00000419107 107 ntBASIC-0.46□□□□□ -2.48
NKX3-1Q99801 AC140658.3-201ENST00000567603 271 ntBASIC-0.46□□□□□ -2.48
NKX3-1Q99801 MIR101-1-201ENST00000362265 75 ntBASIC-0.47□□□□□ -2.48
NKX3-1Q99801 Y_RNA.12-201ENST00000362393 112 ntBASIC-0.47□□□□□ -2.48
NKX3-1Q99801 RNU6-624P-201ENST00000363411 107 ntBASIC-0.47□□□□□ -2.48
NKX3-1Q99801 RNU6-1133P-201ENST00000410963 100 ntBASIC-0.47□□□□□ -2.48
NKX3-1Q99801 Y_RNA.696-201ENST00000516725 107 ntBASIC-0.47□□□□□ -2.48
NKX3-1Q99801 RNU6-844P-201ENST00000517175 102 ntBASIC-0.47□□□□□ -2.48
NKX3-1Q99801 MIR5704-201ENST00000584029 77 ntBASIC-0.47□□□□□ -2.48
NKX3-1Q99801 U6.96-201ENST00000636425 70 ntBASIC-0.47□□□□□ -2.48
NKX3-1Q99801 MIR6086-201ENST00000638065 55 ntBASIC-0.47□□□□□ -2.48
NKX3-1Q99801 SNORD14C-201ENST00000365382 88 ntBASIC-0.48□□□□□ -2.49
NKX3-1Q99801 Y_RNA.611-201ENST00000410682 108 ntBASIC-0.48□□□□□ -2.49
NKX3-1Q99801 RNA5SP169-201ENST00000517268 117 ntBASIC-0.48□□□□□ -2.49
NKX3-1Q99801 AL391099.1-201ENST00000624635 187 ntBASIC-0.48□□□□□ -2.49
NKX3-1Q99801 Y_RNA.17-201ENST00000362433 111 ntBASIC-0.49□□□□□ -2.49
NKX3-1Q99801 RNU6-973P-201ENST00000364690 107 ntBASIC-0.49□□□□□ -2.49
NKX3-1Q99801 RNU6-675P-201ENST00000384236 104 ntBASIC-0.49□□□□□ -2.49
NKX3-1Q99801 MIRLET7B-201ENST00000385140 83 ntBASIC-0.49□□□□□ -2.49
NKX3-1Q99801 SNORD126-201ENST00000459475 77 ntBASIC-0.49□□□□□ -2.49
NKX3-1Q99801 SNORD38.3-201ENST00000516599 73 ntBASIC-0.49□□□□□ -2.49
NKX3-1Q99801 TRAJ37-201ENST00000612375 65 ntAPPRIS P1 BASIC-0.49□□□□□ -2.49
NKX3-1Q99801 SNORA2.1-201ENST00000363089 137 ntBASIC-0.5□□□□□ -2.49
NKX3-1Q99801 SNORA33.1-201ENST00000364957 130 ntBASIC-0.5□□□□□ -2.49
NKX3-1Q99801 Y_RNA.391-201ENST00000383933 94 ntBASIC-0.5□□□□□ -2.49
NKX3-1Q99801 YWHAEP3-201ENST00000582767 121 ntBASIC-0.5□□□□□ -2.49
NKX3-1Q99801 RNA5SP368-201ENST00000364298 116 ntBASIC-0.51□□□□□ -2.49
NKX3-1Q99801 RNU6-1134P-201ENST00000365156 101 ntBASIC-0.51□□□□□ -2.49
NKX3-1Q99801 MIR604-201ENST00000384880 94 ntBASIC-0.51□□□□□ -2.49
NKX3-1Q99801 MIR196A2-201ENST00000385189 110 ntBASIC-0.51□□□□□ -2.49
NKX3-1Q99801 RNY4P30-201ENST00000410216 95 ntBASIC-0.51□□□□□ -2.49
NKX3-1Q99801 Y_RNA.593-201ENST00000410292 98 ntBASIC-0.51□□□□□ -2.49
NKX3-1Q99801 RNU6-758P-201ENST00000516292 89 ntBASIC-0.51□□□□□ -2.49
NKX3-1Q99801 MIR8068-201ENST00000618032 68 ntBASIC-0.51□□□□□ -2.49
Retrieved 100 of 98,524 protein–RNA pairs in 9 ms