Protein–RNA interactions for Protein: Q99626

CDX2, Homeobox protein CDX-2, humanhuman

Predicted RBP Predictions only

Length 313 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDX2Q99626 RNU6-787P-201ENST00000384032 107 ntBASIC0.01□□□□□ -2.41
CDX2Q99626 MIR519C-201ENST00000385053 87 ntBASIC0.01□□□□□ -2.41
CDX2Q99626 RNU6-1177P-201ENST00000391058 104 ntBASIC0.01□□□□□ -2.41
CDX2Q99626 MIR1468-201ENST00000410600 86 ntBASIC0.01□□□□□ -2.41
CDX2Q99626 RNU6-592P-201ENST00000411333 103 ntBASIC0.01□□□□□ -2.41
CDX2Q99626 RNU7-74P-201ENST00000459104 62 ntBASIC0.01□□□□□ -2.41
CDX2Q99626 RNU6-848P-201ENST00000515948 107 ntBASIC0.01□□□□□ -2.41
CDX2Q99626 RNU6-617P-201ENST00000516147 107 ntBASIC0.01□□□□□ -2.41
CDX2Q99626 RNU6-473P-201ENST00000516164 107 ntBASIC0.01□□□□□ -2.41
CDX2Q99626 RNU6-1049P-201ENST00000516414 107 ntBASIC0.01□□□□□ -2.41
CDX2Q99626 RNU6-180P-201ENST00000516697 61 ntBASIC0.01□□□□□ -2.41
CDX2Q99626 RNU6ATAC22P-201ENST00000516794 89 ntBASIC0.01□□□□□ -2.41
CDX2Q99626 AC140658.3-201ENST00000567603 271 ntBASIC0.01□□□□□ -2.41
CDX2Q99626 AC062037.1-201ENST00000605302 128 ntBASIC0.01□□□□□ -2.41
CDX2Q99626 DLEU2_3.2-201ENST00000612883 73 ntBASIC0.01□□□□□ -2.41
CDX2Q99626 MIR6514-201ENST00000622549 70 ntBASIC0.01□□□□□ -2.41
CDX2Q99626 MIR4773-1-201ENST00000637203 78 ntBASIC0.01□□□□□ -2.41
CDX2Q99626 AC006160.2-201ENST00000637708 154 ntBASIC0.01□□□□□ -2.41
CDX2Q99626 MIR655-201ENST00000362159 97 ntBASIC0□□□□□ -2.41
CDX2Q99626 RNU6-294P-201ENST00000364999 102 ntBASIC0□□□□□ -2.41
CDX2Q99626 RNU6-1134P-201ENST00000365156 101 ntBASIC0□□□□□ -2.41
CDX2Q99626 Y_RNA.371-201ENST00000365591 113 ntBASIC0□□□□□ -2.41
CDX2Q99626 SNORD116-22-201ENST00000384430 92 ntBASIC0□□□□□ -2.41
CDX2Q99626 MIR1236-201ENST00000408340 102 ntBASIC0□□□□□ -2.41
CDX2Q99626 SCARNA17.3-201ENST00000516381 125 ntBASIC0□□□□□ -2.41
CDX2Q99626 RNA5SP147-201ENST00000516493 109 ntBASIC0□□□□□ -2.41
CDX2Q99626 MIR4290-201ENST00000583807 95 ntBASIC0□□□□□ -2.41
CDX2Q99626 MIR2052-201ENST00000636055 55 ntBASIC0□□□□□ -2.41
CDX2Q99626 RNU6-624P-201ENST00000363411 107 ntBASIC-0.01□□□□□ -2.41
CDX2Q99626 Y_RNA.219-201ENST00000364232 113 ntBASIC-0.01□□□□□ -2.41
CDX2Q99626 Y_RNA.220-201ENST00000364244 109 ntBASIC-0.01□□□□□ -2.41
CDX2Q99626 SNORD49B-201ENST00000365172 72 ntBASIC-0.01□□□□□ -2.41
CDX2Q99626 Y_RNA.388-201ENST00000383919 113 ntBASIC-0.01□□□□□ -2.41
CDX2Q99626 MIR214-201ENST00000385214 110 ntBASIC-0.01□□□□□ -2.41
CDX2Q99626 AC244250.2-201ENST00000418731 148 ntBASIC-0.01□□□□□ -2.41
CDX2Q99626 RNU7-165P-201ENST00000458864 60 ntBASIC-0.01□□□□□ -2.41
CDX2Q99626 AC093729.1-201ENST00000513074 128 ntBASIC-0.01□□□□□ -2.41
CDX2Q99626 RNU6ATAC17P-201ENST00000516074 71 ntBASIC-0.01□□□□□ -2.41
CDX2Q99626 RNA5SP170-201ENST00000517150 101 ntBASIC-0.01□□□□□ -2.41
CDX2Q99626 MIR4645-201ENST00000583158 77 ntBASIC-0.01□□□□□ -2.41
CDX2Q99626 MIR664A-201ENST00000626086 82 ntBASIC-0.01□□□□□ -2.41
CDX2Q99626 SNORD73B-201ENST00000364394 72 ntBASIC-0.02□□□□□ -2.41
CDX2Q99626 RNU6-652P-201ENST00000365488 107 ntBASIC-0.02□□□□□ -2.41
CDX2Q99626 RNU6-979P-201ENST00000383896 107 ntBASIC-0.02□□□□□ -2.41
CDX2Q99626 RNU6-573P-201ENST00000383938 106 ntBASIC-0.02□□□□□ -2.41
CDX2Q99626 U3.27-201ENST00000391237 200 ntBASIC-0.02□□□□□ -2.41
CDX2Q99626 RNU6-337P-201ENST00000391243 106 ntBASIC-0.02□□□□□ -2.41
CDX2Q99626 MTATP6P29-201ENST00000415057 132 ntBASIC-0.02□□□□□ -2.41
CDX2Q99626 RPS29P8-201ENST00000445109 171 ntBASIC-0.02□□□□□ -2.41
CDX2Q99626 AC022137.1-201ENST00000483735 151 ntBASIC-0.02□□□□□ -2.41
CDX2Q99626 AP000676.1-201ENST00000533307 52 ntBASIC-0.02□□□□□ -2.41
CDX2Q99626 U6.81-201ENST00000612550 106 ntBASIC-0.02□□□□□ -2.41
CDX2Q99626 RNU6-208P-201ENST00000362431 107 ntBASIC-0.03□□□□□ -2.41
CDX2Q99626 Y_RNA.96-201ENST00000363092 109 ntBASIC-0.03□□□□□ -2.41
CDX2Q99626 RNU6-1255P-201ENST00000363434 112 ntBASIC-0.03□□□□□ -2.41
CDX2Q99626 RNU6-340P-201ENST00000364005 107 ntBASIC-0.03□□□□□ -2.41
CDX2Q99626 Y_RNA.313-201ENST00000365095 103 ntBASIC-0.03□□□□□ -2.41
CDX2Q99626 MIR610-201ENST00000385139 96 ntBASIC-0.03□□□□□ -2.41
CDX2Q99626 SNORD75.2-201ENST00000408784 58 ntBASIC-0.03□□□□□ -2.41
CDX2Q99626 MIR5588-201ENST00000581890 63 ntBASIC-0.03□□□□□ -2.41
CDX2Q99626 MIR4484-201ENST00000582855 83 ntBASIC-0.03□□□□□ -2.41
CDX2Q99626 Y_RNA.788-201ENST00000622394 112 ntBASIC-0.03□□□□□ -2.41
CDX2Q99626 MIR4679-1-201ENST00000637619 75 ntBASIC-0.03□□□□□ -2.41
CDX2Q99626 Y_RNA.12-201ENST00000362393 112 ntBASIC-0.04□□□□□ -2.42
CDX2Q99626 RNY1P1-201ENST00000364372 112 ntBASIC-0.04□□□□□ -2.42
CDX2Q99626 Y_RNA.369-201ENST00000365568 117 ntBASIC-0.04□□□□□ -2.42
CDX2Q99626 RNU6-1039P-201ENST00000383931 107 ntBASIC-0.04□□□□□ -2.42
CDX2Q99626 Y_RNA.660-201ENST00000516002 120 ntBASIC-0.04□□□□□ -2.42
CDX2Q99626 MIR3657-201ENST00000584818 117 ntBASIC-0.04□□□□□ -2.42
CDX2Q99626 U7.6-201ENST00000610841 64 ntBASIC-0.04□□□□□ -2.42
CDX2Q99626 MIR6509-201ENST00000614603 85 ntBASIC-0.04□□□□□ -2.42
CDX2Q99626 uc_338.36-201ENST00000622331 158 ntBASIC-0.04□□□□□ -2.42
CDX2Q99626 MIRLET7A1-201ENST00000362295 80 ntBASIC-0.05□□□□□ -2.42
CDX2Q99626 SNORD114-29-201ENST00000364819 70 ntBASIC-0.05□□□□□ -2.42
CDX2Q99626 Y_RNA.316-201ENST00000365118 111 ntBASIC-0.05□□□□□ -2.42
CDX2Q99626 RNU6-46P-201ENST00000383860 107 ntBASIC-0.05□□□□□ -2.42
CDX2Q99626 RNU6-260P-201ENST00000384092 107 ntBASIC-0.05□□□□□ -2.42
CDX2Q99626 MIR9-2-201ENST00000384838 87 ntBASIC-0.05□□□□□ -2.42
CDX2Q99626 SNORA75.1-201ENST00000391130 148 ntBASIC-0.05□□□□□ -2.42
CDX2Q99626 Y_RNA.606-201ENST00000410579 103 ntBASIC-0.05□□□□□ -2.42
CDX2Q99626 AL353795.2-201ENST00000431804 425 ntTSL 2 BASIC-0.05□□□□□ -2.42
CDX2Q99626 Y_RNA.633-201ENST00000459107 95 ntBASIC-0.05□□□□□ -2.42
CDX2Q99626 RNU7-159P-201ENST00000459284 62 ntBASIC-0.05□□□□□ -2.42
CDX2Q99626 Y_RNA.694-201ENST00000516677 117 ntBASIC-0.05□□□□□ -2.42
CDX2Q99626 CR383656.4-201ENST00000546909 122 ntBASIC-0.05□□□□□ -2.42
CDX2Q99626 TRAJ37-201ENST00000612375 65 ntAPPRIS P1 BASIC-0.05□□□□□ -2.42
CDX2Q99626 IGLL4P-201ENST00000614590 133 ntBASIC-0.05□□□□□ -2.42
CDX2Q99626 MIR8068-201ENST00000618032 68 ntBASIC-0.05□□□□□ -2.42
CDX2Q99626 SYCP2-202ENST00000371001 5479 ntAPPRIS P2 TSL 1 (best) BASIC-0.06□□□□□ -2.42
CDX2Q99626 MIR20A-201ENST00000362279 71 ntBASIC-0.06□□□□□ -2.42
CDX2Q99626 RNU6-502P-201ENST00000362419 108 ntBASIC-0.06□□□□□ -2.42
CDX2Q99626 Y_RNA.94-201ENST00000363068 106 ntBASIC-0.06□□□□□ -2.42
CDX2Q99626 SNORA33.1-201ENST00000364957 130 ntBASIC-0.06□□□□□ -2.42
CDX2Q99626 SNORD56B-201ENST00000384713 71 ntBASIC-0.06□□□□□ -2.42
CDX2Q99626 SNORD77.2-201ENST00000391045 68 ntBASIC-0.06□□□□□ -2.42
CDX2Q99626 SNX3P1X-201ENST00000414887 175 ntBASIC-0.06□□□□□ -2.42
CDX2Q99626 AC244090.1-201ENST00000441884 93 ntBASIC-0.06□□□□□ -2.42
CDX2Q99626 RNU7-24P-201ENST00000458867 62 ntBASIC-0.06□□□□□ -2.42
CDX2Q99626 MIR548AG1-201ENST00000579932 66 ntBASIC-0.06□□□□□ -2.42
CDX2Q99626 MIR5704-201ENST00000584029 77 ntBASIC-0.06□□□□□ -2.42
Retrieved 100 of 98,524 protein–RNA pairs in 236 ms