Protein–RNA interactions for Protein: Q8N6Y0

USHBP1, Usher syndrome type-1C protein-binding protein 1, humanhuman

Predictions only

Length 703 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USHBP1Q8N6Y0 MTND4LP1-201ENST00000446263 157 ntBASIC0.81□□□□□ -2.28
USHBP1Q8N6Y0 RNU6-982P-201ENST00000516216 102 ntBASIC0.81□□□□□ -2.28
USHBP1Q8N6Y0 SCARNA17.3-201ENST00000516381 125 ntBASIC0.81□□□□□ -2.28
USHBP1Q8N6Y0 RNU6-229P-201ENST00000516614 102 ntBASIC0.81□□□□□ -2.28
USHBP1Q8N6Y0 MIR4473-201ENST00000583731 91 ntBASIC0.81□□□□□ -2.28
USHBP1Q8N6Y0 C18orf54-201ENST00000300091 5237 ntAPPRIS P1 TSL 1 (best) BASIC0.81□□□□□ -2.28
USHBP1Q8N6Y0 RNA5SP347-201ENST00000362445 119 ntBASIC0.8□□□□□ -2.28
USHBP1Q8N6Y0 SNORD116-24-201ENST00000384549 92 ntBASIC0.8□□□□□ -2.28
USHBP1Q8N6Y0 SNORD71-201ENST00000411292 86 ntBASIC0.8□□□□□ -2.28
USHBP1Q8N6Y0 RNA5SP147-201ENST00000516493 109 ntBASIC0.8□□□□□ -2.28
USHBP1Q8N6Y0 SNORA40.17-201ENST00000517256 115 ntBASIC0.8□□□□□ -2.28
USHBP1Q8N6Y0 CALCRL-202ENST00000409998 5223 ntAPPRIS P1 TSL 5 BASIC0.79□□□□□ -2.28
USHBP1Q8N6Y0 SNORD114-23-201ENST00000363536 72 ntBASIC0.79□□□□□ -2.28
USHBP1Q8N6Y0 MIR518A1-201ENST00000385068 85 ntBASIC0.79□□□□□ -2.28
USHBP1Q8N6Y0 AC125388.1-201ENST00000459631 156 ntBASIC0.79□□□□□ -2.28
USHBP1Q8N6Y0 AC243829.3-201ENST00000622177 108 ntBASIC0.79□□□□□ -2.28
USHBP1Q8N6Y0 MIR6739-201ENST00000622461 75 ntBASIC0.79□□□□□ -2.28
USHBP1Q8N6Y0 SNORA2A-201ENST00000383885 135 ntBASIC0.78□□□□□ -2.28
USHBP1Q8N6Y0 Y_RNA.386-201ENST00000383913 105 ntBASIC0.78□□□□□ -2.28
USHBP1Q8N6Y0 TRAJ42-201ENST00000390495 66 ntAPPRIS P1 BASIC0.78□□□□□ -2.28
USHBP1Q8N6Y0 MIR1273G-201ENST00000577677 100 ntBASIC0.78□□□□□ -2.28
USHBP1Q8N6Y0 MIR548AE1-201ENST00000583292 70 ntBASIC0.78□□□□□ -2.28
USHBP1Q8N6Y0 RNU1-29P-201ENST00000606574 126 ntBASIC0.78□□□□□ -2.28
USHBP1Q8N6Y0 U7.6-201ENST00000610841 64 ntBASIC0.78□□□□□ -2.28
USHBP1Q8N6Y0 Y_RNA.30-201ENST00000362572 97 ntBASIC0.77□□□□□ -2.29
USHBP1Q8N6Y0 RNU6-668P-201ENST00000364180 107 ntBASIC0.77□□□□□ -2.29
USHBP1Q8N6Y0 RNU6-645P-201ENST00000364649 106 ntBASIC0.77□□□□□ -2.29
USHBP1Q8N6Y0 Y_RNA.443-201ENST00000384135 111 ntBASIC0.77□□□□□ -2.29
USHBP1Q8N6Y0 HMGN2P22-201ENST00000427588 175 ntBASIC0.77□□□□□ -2.29
USHBP1Q8N6Y0 RNU6-848P-201ENST00000515948 107 ntBASIC0.77□□□□□ -2.29
USHBP1Q8N6Y0 RNU6-617P-201ENST00000516147 107 ntBASIC0.77□□□□□ -2.29
USHBP1Q8N6Y0 RNU6-473P-201ENST00000516164 107 ntBASIC0.77□□□□□ -2.29
USHBP1Q8N6Y0 RNU6-1049P-201ENST00000516414 107 ntBASIC0.77□□□□□ -2.29
USHBP1Q8N6Y0 AC005520.4-201ENST00000604337 90 ntBASIC0.77□□□□□ -2.29
USHBP1Q8N6Y0 SNORA25.4-201ENST00000363666 124 ntBASIC0.76□□□□□ -2.29
USHBP1Q8N6Y0 Y_RNA.340-201ENST00000365330 92 ntBASIC0.76□□□□□ -2.29
USHBP1Q8N6Y0 RNU6-1162P-201ENST00000384443 104 ntBASIC0.76□□□□□ -2.29
USHBP1Q8N6Y0 G3BP1-214ENST00000627077 114 ntTSL 5 BASIC0.76□□□□□ -2.29
USHBP1Q8N6Y0 Y_RNA.125-201ENST00000363371 111 ntBASIC0.75□□□□□ -2.29
USHBP1Q8N6Y0 ZBTB41-201ENST00000367405 8478 ntAPPRIS P1 TSL 1 (best) BASIC0.75□□□□□ -2.29
USHBP1Q8N6Y0 Y_RNA.423-201ENST00000384057 113 ntBASIC0.74□□□□□ -2.29
USHBP1Q8N6Y0 RNU4-54P-201ENST00000516428 129 ntBASIC0.74□□□□□ -2.29
USHBP1Q8N6Y0 ZNF518A-209ENST00000614149 7911 ntAPPRIS P1 TSL 5 BASIC0.73□□□□□ -2.29
USHBP1Q8N6Y0 RNU6-471P-201ENST00000383944 106 ntBASIC0.73□□□□□ -2.29
USHBP1Q8N6Y0 SNORA15B-2-201ENST00000384058 135 ntBASIC0.73□□□□□ -2.29
USHBP1Q8N6Y0 SNORA15B-1-201ENST00000384334 135 ntBASIC0.73□□□□□ -2.29
USHBP1Q8N6Y0 MIR521-2-201ENST00000384818 87 ntBASIC0.73□□□□□ -2.29
USHBP1Q8N6Y0 snoU13.13-201ENST00000458842 104 ntBASIC0.73□□□□□ -2.29
USHBP1Q8N6Y0 RNU6-656P-201ENST00000516785 107 ntBASIC0.73□□□□□ -2.29
USHBP1Q8N6Y0 Y_RNA.633-201ENST00000459107 95 ntBASIC0.72□□□□□ -2.29
USHBP1Q8N6Y0 AC021146.9-201ENST00000512503 156 ntBASIC0.72□□□□□ -2.29
USHBP1Q8N6Y0 RNA5SP330-201ENST00000517096 96 ntBASIC0.72□□□□□ -2.29
USHBP1Q8N6Y0 UBL4A-207ENST00000630530 102 ntTSL 5 BASIC0.72□□□□□ -2.29
USHBP1Q8N6Y0 AC010487.4-201ENST00000637027 61 ntBASIC0.72□□□□□ -2.29
USHBP1Q8N6Y0 Y_RNA.374-201ENST00000365606 101 ntBASIC0.71□□□□□ -2.3
USHBP1Q8N6Y0 MIR20A-201ENST00000362279 71 ntBASIC0.7□□□□□ -2.3
USHBP1Q8N6Y0 SNORA63.6-201ENST00000364921 119 ntBASIC0.7□□□□□ -2.3
USHBP1Q8N6Y0 MIR548E-201ENST00000408287 88 ntBASIC0.7□□□□□ -2.3
USHBP1Q8N6Y0 AC244090.1-201ENST00000441884 93 ntBASIC0.7□□□□□ -2.3
USHBP1Q8N6Y0 MIR1265-201ENST00000408444 86 ntBASIC0.69□□□□□ -2.3
USHBP1Q8N6Y0 RNU6-863P-201ENST00000515989 104 ntBASIC0.69□□□□□ -2.3
USHBP1Q8N6Y0 MIR6755-201ENST00000619993 66 ntBASIC0.69□□□□□ -2.3
USHBP1Q8N6Y0 Y_RNA.115-201ENST00000363272 98 ntBASIC0.68□□□□□ -2.3
USHBP1Q8N6Y0 MIR582-201ENST00000365731 98 ntBASIC0.68□□□□□ -2.3
USHBP1Q8N6Y0 MIR516B1-201ENST00000385211 90 ntBASIC0.68□□□□□ -2.3
USHBP1Q8N6Y0 RNU6-1232P-201ENST00000516299 86 ntBASIC0.68□□□□□ -2.3
USHBP1Q8N6Y0 AC103706.3-201ENST00000636297 85 ntBASIC0.68□□□□□ -2.3
USHBP1Q8N6Y0 RNA5SP215-201ENST00000363440 122 ntBASIC0.67□□□□□ -2.3
USHBP1Q8N6Y0 RNU6-945P-201ENST00000383947 107 ntBASIC0.67□□□□□ -2.3
USHBP1Q8N6Y0 MIR92A1-201ENST00000385233 78 ntBASIC0.67□□□□□ -2.3
USHBP1Q8N6Y0 SNORD44.1-201ENST00000363202 61 ntBASIC0.66□□□□□ -2.3
USHBP1Q8N6Y0 SNORD114-29-201ENST00000364819 70 ntBASIC0.66□□□□□ -2.3
USHBP1Q8N6Y0 Y_RNA.375-201ENST00000365625 101 ntBASIC0.66□□□□□ -2.3
USHBP1Q8N6Y0 RNU6-542P-201ENST00000516405 103 ntBASIC0.66□□□□□ -2.3
USHBP1Q8N6Y0 RNU6-1089P-201ENST00000516473 104 ntBASIC0.66□□□□□ -2.3
USHBP1Q8N6Y0 MIR4511-201ENST00000582784 87 ntBASIC0.66□□□□□ -2.3
USHBP1Q8N6Y0 SNORD2-201ENST00000459163 69 ntBASIC0.65□□□□□ -2.31
USHBP1Q8N6Y0 MIR4677-201ENST00000584153 80 ntBASIC0.65□□□□□ -2.31
USHBP1Q8N6Y0 MIR760-201ENST00000390220 80 ntBASIC0.64□□□□□ -2.31
USHBP1Q8N6Y0 MIR548AD-201ENST00000584780 82 ntBASIC0.64□□□□□ -2.31
USHBP1Q8N6Y0 AL109933.3-201ENST00000619095 188 ntBASIC0.64□□□□□ -2.31
USHBP1Q8N6Y0 C9orf84-203ENST00000374287 4721 ntAPPRIS P3 TSL 5 BASIC0.64□□□□□ -2.31
USHBP1Q8N6Y0 SNORA33.1-201ENST00000364957 130 ntBASIC0.63□□□□□ -2.31
USHBP1Q8N6Y0 RNA5SP128-201ENST00000365305 116 ntBASIC0.63□□□□□ -2.31
USHBP1Q8N6Y0 MIR501-201ENST00000390204 84 ntBASIC0.63□□□□□ -2.31
USHBP1Q8N6Y0 AL157398.1-201ENST00000452981 186 ntBASIC0.63□□□□□ -2.31
USHBP1Q8N6Y0 AC084368.1-201ENST00000620935 65 ntBASIC0.63□□□□□ -2.31
USHBP1Q8N6Y0 RNA5SP121-201ENST00000516537 101 ntBASIC0.62□□□□□ -2.31
USHBP1Q8N6Y0 RNU7-188P-201ENST00000517063 64 ntBASIC0.62□□□□□ -2.31
USHBP1Q8N6Y0 AC243829.6-201ENST00000612652 106 ntBASIC0.62□□□□□ -2.31
USHBP1Q8N6Y0 uc_338.17-201ENST00000619633 179 ntBASIC0.62□□□□□ -2.31
USHBP1Q8N6Y0 MIR5087-201ENST00000635826 76 ntBASIC0.62□□□□□ -2.31
USHBP1Q8N6Y0 MIR1197-201ENST00000408818 88 ntBASIC0.61□□□□□ -2.31
USHBP1Q8N6Y0 AC114737.2-201ENST00000421583 173 ntBASIC0.61□□□□□ -2.31
USHBP1Q8N6Y0 MIR8087-201ENST00000612745 78 ntBASIC0.61□□□□□ -2.31
USHBP1Q8N6Y0 U6.96-201ENST00000636425 70 ntBASIC0.61□□□□□ -2.31
USHBP1Q8N6Y0 MIR924-201ENST00000638017 53 ntBASIC0.61□□□□□ -2.31
USHBP1Q8N6Y0 MIR548C-201ENST00000384815 97 ntBASIC0.6□□□□□ -2.31
USHBP1Q8N6Y0 MIR499B-201ENST00000636498 73 ntBASIC0.59□□□□□ -2.31
USHBP1Q8N6Y0 MIR330-201ENST00000362196 94 ntBASIC0.58□□□□□ -2.32
Retrieved 100 of 98,524 protein–RNA pairs in 208.9 ms