Protein–RNA interactions for Protein: Q3V6T2

CCDC88A, Girdin, humanhuman

Predictions only

Length 1,871 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88AQ3V6T2 RNU6-704P-201ENST00000364162 103 ntBASIC-1.9□□□□□ -2.71
CCDC88AQ3V6T2 Y_RNA.460-201ENST00000384255 102 ntBASIC-1.9□□□□□ -2.71
CCDC88AQ3V6T2 MIR1263-201ENST00000408324 86 ntBASIC-1.9□□□□□ -2.71
CCDC88AQ3V6T2 MIR548H1-201ENST00000408610 102 ntBASIC-1.9□□□□□ -2.71
CCDC88AQ3V6T2 RNU6-79P-201ENST00000362511 107 ntBASIC-1.91□□□□□ -2.72
CCDC88AQ3V6T2 FAS-AS1.1-201ENST00000615327 126 ntBASIC-1.91□□□□□ -2.72
CCDC88AQ3V6T2 Y_RNA.47-201ENST00000362697 108 ntBASIC-1.92□□□□□ -2.72
CCDC88AQ3V6T2 AL118496.2-201ENST00000448300 230 ntBASIC-1.92□□□□□ -2.72
CCDC88AQ3V6T2 TRAJ37-201ENST00000612375 65 ntAPPRIS P1 BASIC-1.92□□□□□ -2.72
CCDC88AQ3V6T2 Y_RNA.175-201ENST00000363794 111 ntBASIC-1.92□□□□□ -2.72
CCDC88AQ3V6T2 RNU6-816P-201ENST00000390914 107 ntBASIC-1.92□□□□□ -2.72
CCDC88AQ3V6T2 RNU6-1268P-201ENST00000391214 107 ntBASIC-1.92□□□□□ -2.72
CCDC88AQ3V6T2 RNU6-1239P-201ENST00000391310 107 ntBASIC-1.92□□□□□ -2.72
CCDC88AQ3V6T2 SNORA18.5-201ENST00000516616 101 ntBASIC-1.92□□□□□ -2.72
CCDC88AQ3V6T2 Y_RNA.10-201ENST00000362371 110 ntBASIC-1.93□□□□□ -2.72
CCDC88AQ3V6T2 RNU6-824P-201ENST00000363724 104 ntBASIC-1.93□□□□□ -2.72
CCDC88AQ3V6T2 Y_RNA.200-201ENST00000364018 102 ntBASIC-1.93□□□□□ -2.72
CCDC88AQ3V6T2 SNORD58A-201ENST00000383875 65 ntBASIC-1.93□□□□□ -2.72
CCDC88AQ3V6T2 MIR507-201ENST00000385234 94 ntBASIC-1.93□□□□□ -2.72
CCDC88AQ3V6T2 TRAJ30-201ENST00000390507 57 ntAPPRIS P1 BASIC-1.93□□□□□ -2.72
CCDC88AQ3V6T2 AC072026.1-201ENST00000605023 201 ntBASIC-1.93□□□□□ -2.72
CCDC88AQ3V6T2 AC025166.1-201ENST00000612411 163 ntBASIC-1.93□□□□□ -2.72
CCDC88AQ3V6T2 MIR664B-201ENST00000626756 61 ntBASIC-1.93□□□□□ -2.72
CCDC88AQ3V6T2 Y_RNA.202-201ENST00000364083 110 ntBASIC-1.94□□□□□ -2.72
CCDC88AQ3V6T2 Y_RNA.233-201ENST00000364407 101 ntBASIC-1.94□□□□□ -2.72
CCDC88AQ3V6T2 Y_RNA.272-201ENST00000364696 102 ntBASIC-1.94□□□□□ -2.72
CCDC88AQ3V6T2 RNU6-1160P-201ENST00000384546 104 ntBASIC-1.94□□□□□ -2.72
CCDC88AQ3V6T2 RNU6-519P-201ENST00000410590 108 ntBASIC-1.94□□□□□ -2.72
CCDC88AQ3V6T2 RNY3P2-201ENST00000362918 102 ntBASIC-1.95□□□□□ -2.72
CCDC88AQ3V6T2 Y_RNA.216-201ENST00000364205 93 ntBASIC-1.95□□□□□ -2.72
CCDC88AQ3V6T2 Y_RNA.525-201ENST00000384570 113 ntBASIC-1.95□□□□□ -2.72
CCDC88AQ3V6T2 RNU6-460P-201ENST00000391158 108 ntBASIC-1.95□□□□□ -2.72
CCDC88AQ3V6T2 SNORD19-201ENST00000391191 68 ntBASIC-1.95□□□□□ -2.72
CCDC88AQ3V6T2 MIR548I1-201ENST00000408810 149 ntBASIC-1.95□□□□□ -2.72
CCDC88AQ3V6T2 AL021921.1-201ENST00000442774 93 ntBASIC-1.95□□□□□ -2.72
CCDC88AQ3V6T2 RNU6-1191P-201ENST00000516799 107 ntBASIC-1.95□□□□□ -2.72
CCDC88AQ3V6T2 Y_RNA.535-201ENST00000384612 99 ntBASIC-1.96□□□□□ -2.72
CCDC88AQ3V6T2 SNORD37.2-201ENST00000391075 66 ntBASIC-1.96□□□□□ -2.72
CCDC88AQ3V6T2 RNU6-1219P-201ENST00000516143 112 ntBASIC-1.96□□□□□ -2.72
CCDC88AQ3V6T2 RNU6-1121P-201ENST00000516802 109 ntBASIC-1.96□□□□□ -2.72
CCDC88AQ3V6T2 Y_RNA.162-201ENST00000363683 102 ntBASIC-1.97□□□□□ -2.72
CCDC88AQ3V6T2 RNA5SP86-201ENST00000390869 98 ntBASIC-1.97□□□□□ -2.72
CCDC88AQ3V6T2 RNU6-695P-201ENST00000391157 104 ntBASIC-1.97□□□□□ -2.72
CCDC88AQ3V6T2 RNU7-88P-201ENST00000458752 63 ntBASIC-1.97□□□□□ -2.72
CCDC88AQ3V6T2 RNU5E-3P-201ENST00000515913 68 ntBASIC-1.97□□□□□ -2.72
CCDC88AQ3V6T2 Y_RNA.662-201ENST00000516028 97 ntBASIC-1.97□□□□□ -2.72
CCDC88AQ3V6T2 VTRNA2-1-201ENST00000602301 127 ntBASIC-1.97□□□□□ -2.73
CCDC88AQ3V6T2 Y_RNA.509-201ENST00000384506 99 ntBASIC-1.98□□□□□ -2.73
CCDC88AQ3V6T2 Y_RNA.574-201ENST00000384766 95 ntBASIC-1.98□□□□□ -2.73
CCDC88AQ3V6T2 Y_RNA.606-201ENST00000410579 103 ntBASIC-1.98□□□□□ -2.73
CCDC88AQ3V6T2 RNU6-1238P-201ENST00000517215 102 ntBASIC-1.98□□□□□ -2.73
CCDC88AQ3V6T2 MIR4756-201ENST00000577874 78 ntBASIC-1.98□□□□□ -2.73
CCDC88AQ3V6T2 U7.2-201ENST00000607576 63 ntBASIC-1.98□□□□□ -2.73
CCDC88AQ3V6T2 RNY1P11-201ENST00000363759 113 ntBASIC-1.99□□□□□ -2.73
CCDC88AQ3V6T2 Y_RNA.284-201ENST00000364806 102 ntBASIC-1.99□□□□□ -2.73
CCDC88AQ3V6T2 RNU6-915P-201ENST00000364943 103 ntBASIC-1.99□□□□□ -2.73
CCDC88AQ3V6T2 Y_RNA.701-201ENST00000516812 110 ntBASIC-1.99□□□□□ -2.73
CCDC88AQ3V6T2 Y_RNA.467-201ENST00000384297 102 ntBASIC-1.99□□□□□ -2.73
CCDC88AQ3V6T2 MTND3P2-201ENST00000438452 342 ntBASIC-1.99□□□□□ -2.73
CCDC88AQ3V6T2 AC108019.1-201ENST00000512540 175 ntBASIC-1.99□□□□□ -2.73
CCDC88AQ3V6T2 RNU6-168P-201ENST00000516189 101 ntBASIC-1.99□□□□□ -2.73
CCDC88AQ3V6T2 Y_RNA.702-201ENST00000516843 96 ntBASIC-1.99□□□□□ -2.73
CCDC88AQ3V6T2 AC104996.3-201ENST00000590718 94 ntBASIC-1.99□□□□□ -2.73
CCDC88AQ3V6T2 Y_RNA.96-201ENST00000363092 109 ntBASIC-2□□□□□ -2.73
CCDC88AQ3V6T2 RNU6-972P-201ENST00000391208 107 ntBASIC-2□□□□□ -2.73
CCDC88AQ3V6T2 AL353795.2-201ENST00000431804 425 ntTSL 2 BASIC-2□□□□□ -2.73
CCDC88AQ3V6T2 RNU6-1262P-201ENST00000516217 96 ntBASIC-2□□□□□ -2.73
CCDC88AQ3V6T2 RNU6-752P-201ENST00000516376 102 ntBASIC-2□□□□□ -2.73
CCDC88AQ3V6T2 MIR548S-201ENST00000581352 82 ntBASIC-2□□□□□ -2.73
CCDC88AQ3V6T2 MIR5683-201ENST00000636514 76 ntBASIC-2□□□□□ -2.73
CCDC88AQ3V6T2 Y_RNA.95-201ENST00000363079 95 ntBASIC-2.01□□□□□ -2.73
CCDC88AQ3V6T2 RNU6-1020P-201ENST00000363684 107 ntBASIC-2.01□□□□□ -2.73
CCDC88AQ3V6T2 RNU6-246P-201ENST00000384702 107 ntBASIC-2.01□□□□□ -2.73
CCDC88AQ3V6T2 RNU6-400P-201ENST00000391173 106 ntBASIC-2.01□□□□□ -2.73
CCDC88AQ3V6T2 AC141273.2-201ENST00000618989 130 ntBASIC-2.01□□□□□ -2.73
CCDC88AQ3V6T2 Y_RNA.422-201ENST00000384054 114 ntBASIC-2.01□□□□□ -2.73
CCDC88AQ3V6T2 Y_RNA.502-201ENST00000384478 113 ntBASIC-2.01□□□□□ -2.73
CCDC88AQ3V6T2 MTCYBP6-201ENST00000441810 138 ntBASIC-2.01□□□□□ -2.73
CCDC88AQ3V6T2 RNU6-1023P-201ENST00000516137 106 ntBASIC-2.01□□□□□ -2.73
CCDC88AQ3V6T2 RNU6-656P-201ENST00000516785 107 ntBASIC-2.01□□□□□ -2.73
CCDC88AQ3V6T2 MIR23C-201ENST00000579846 100 ntBASIC-2.01□□□□□ -2.73
CCDC88AQ3V6T2 RNU6-738P-201ENST00000384531 106 ntBASIC-2.02□□□□□ -2.73
CCDC88AQ3V6T2 MIR548F4-201ENST00000408515 105 ntBASIC-2.02□□□□□ -2.73
CCDC88AQ3V6T2 RNU6-412P-201ENST00000516434 106 ntBASIC-2.02□□□□□ -2.73
CCDC88AQ3V6T2 AC022559.1-201ENST00000520905 205 ntBASIC-2.02□□□□□ -2.73
CCDC88AQ3V6T2 AC090616.4-201ENST00000448026 115 ntBASIC-2.03□□□□□ -2.73
CCDC88AQ3V6T2 Y_RNA.678-201ENST00000516408 96 ntBASIC-2.03□□□□□ -2.73
CCDC88AQ3V6T2 Y_RNA.400-201ENST00000383963 111 ntBASIC-2.03□□□□□ -2.73
CCDC88AQ3V6T2 RNU6-781P-201ENST00000516377 101 ntBASIC-2.03□□□□□ -2.73
CCDC88AQ3V6T2 AC062037.2-201ENST00000610137 73 ntBASIC-2.03□□□□□ -2.73
CCDC88AQ3V6T2 MIR4773-1-201ENST00000637203 78 ntBASIC-2.03□□□□□ -2.73
CCDC88AQ3V6T2 RNU4-11P-201ENST00000365287 132 ntBASIC-2.04□□□□□ -2.74
CCDC88AQ3V6T2 RNU6-813P-201ENST00000384691 107 ntBASIC-2.04□□□□□ -2.74
CCDC88AQ3V6T2 MT-TM-201ENST00000387377 68 ntBASIC-2.04□□□□□ -2.74
CCDC88AQ3V6T2 RNU6-696P-201ENST00000390834 107 ntBASIC-2.04□□□□□ -2.74
CCDC88AQ3V6T2 MIR3128-201ENST00000581957 66 ntBASIC-2.04□□□□□ -2.74
CCDC88AQ3V6T2 RNU6-1094P-201ENST00000362416 104 ntBASIC-2.05□□□□□ -2.74
CCDC88AQ3V6T2 Y_RNA.61-201ENST00000362835 102 ntBASIC-2.05□□□□□ -2.74
CCDC88AQ3V6T2 RNA5SP405-201ENST00000363059 114 ntBASIC-2.05□□□□□ -2.74
CCDC88AQ3V6T2 MIR548A3-201ENST00000385297 97 ntBASIC-2.05□□□□□ -2.74
Retrieved 100 of 98,524 protein–RNA pairs in 61.8 ms