Protein–RNA interactions for Protein: Q15459

SF3A1, Splicing factor 3A subunit 1, humanhuman

Known RBP Predictions only

Length 793 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SF3A1Q15459 U6.81-201ENST00000612550 106 ntBASIC0.02□□□□□ -2.41
SF3A1Q15459 MIR6514-201ENST00000622549 70 ntBASIC0.02□□□□□ -2.41
SF3A1Q15459 MIR4773-1-201ENST00000637203 78 ntBASIC0.02□□□□□ -2.41
SF3A1Q15459 MIR6086-201ENST00000638065 55 ntBASIC0.02□□□□□ -2.41
SF3A1Q15459 MIR371B-201ENST00000638082 66 ntBASIC0.02□□□□□ -2.41
SF3A1Q15459 RNU6-681P-201ENST00000364012 104 ntBASIC0.01□□□□□ -2.41
SF3A1Q15459 MIR106A-201ENST00000384870 81 ntBASIC0.01□□□□□ -2.41
SF3A1Q15459 Y_RNA.607-201ENST00000410597 98 ntBASIC0.01□□□□□ -2.41
SF3A1Q15459 SNORD2-201ENST00000459163 69 ntBASIC0.01□□□□□ -2.41
SF3A1Q15459 HAR1A.1-201ENST00000459583 118 ntBASIC0.01□□□□□ -2.41
SF3A1Q15459 RNU6-175P-201ENST00000516896 107 ntBASIC0.01□□□□□ -2.41
SF3A1Q15459 RNU6-274P-201ENST00000459566 107 ntBASIC0□□□□□ -2.41
SF3A1Q15459 RNU6-1108P-201ENST00000516308 104 ntBASIC0□□□□□ -2.41
SF3A1Q15459 RNU6-557P-201ENST00000516842 110 ntBASIC0□□□□□ -2.41
SF3A1Q15459 MIR5588-201ENST00000581890 63 ntBASIC0□□□□□ -2.41
SF3A1Q15459 MIR4636-201ENST00000582271 80 ntBASIC0□□□□□ -2.41
SF3A1Q15459 YWHAEP3-201ENST00000582767 121 ntBASIC0□□□□□ -2.41
SF3A1Q15459 MIR4290-201ENST00000583807 95 ntBASIC0□□□□□ -2.41
SF3A1Q15459 Y_RNA.43-201ENST00000362670 111 ntBASIC-0.01□□□□□ -2.41
SF3A1Q15459 Y_RNA.73-201ENST00000362910 113 ntBASIC-0.01□□□□□ -2.41
SF3A1Q15459 RNU6-1255P-201ENST00000363434 112 ntBASIC-0.01□□□□□ -2.41
SF3A1Q15459 Y_RNA.371-201ENST00000365591 113 ntBASIC-0.01□□□□□ -2.41
SF3A1Q15459 AL353795.2-201ENST00000431804 425 ntTSL 2 BASIC-0.01□□□□□ -2.41
SF3A1Q15459 RNU6ATAC17P-201ENST00000516074 71 ntBASIC-0.01□□□□□ -2.41
SF3A1Q15459 MIR148A-201ENST00000362215 68 ntBASIC-0.02□□□□□ -2.41
SF3A1Q15459 SNORD114-16-201ENST00000363044 70 ntBASIC-0.02□□□□□ -2.41
SF3A1Q15459 RNU6-340P-201ENST00000364005 107 ntBASIC-0.02□□□□□ -2.41
SF3A1Q15459 RNU6-979P-201ENST00000383896 107 ntBASIC-0.02□□□□□ -2.41
SF3A1Q15459 RNU6-820P-201ENST00000384273 107 ntBASIC-0.02□□□□□ -2.41
SF3A1Q15459 MIR5589-201ENST00000579442 60 ntBASIC-0.02□□□□□ -2.41
SF3A1Q15459 MIR494-201ENST00000349529 81 ntBASIC-0.03□□□□□ -2.41
SF3A1Q15459 Y_RNA.12-201ENST00000362393 112 ntBASIC-0.03□□□□□ -2.41
SF3A1Q15459 RNU6-129P-201ENST00000391022 107 ntBASIC-0.03□□□□□ -2.41
SF3A1Q15459 AL691482.2-201ENST00000457453 84 ntBASIC-0.03□□□□□ -2.41
SF3A1Q15459 AC104692.1-201ENST00000472406 90 ntBASIC-0.03□□□□□ -2.41
SF3A1Q15459 RNA5SP98-201ENST00000363158 137 ntBASIC-0.04□□□□□ -2.42
SF3A1Q15459 RNU6-1039P-201ENST00000383931 107 ntBASIC-0.04□□□□□ -2.42
SF3A1Q15459 RNU6-242P-201ENST00000384359 107 ntBASIC-0.04□□□□□ -2.42
SF3A1Q15459 MIR548E-201ENST00000408287 88 ntBASIC-0.04□□□□□ -2.42
SF3A1Q15459 AC022137.1-201ENST00000483735 151 ntBASIC-0.04□□□□□ -2.42
SF3A1Q15459 MIR4802-201ENST00000581881 80 ntBASIC-0.04□□□□□ -2.42
SF3A1Q15459 RNU6-686P-201ENST00000364839 107 ntBASIC-0.05□□□□□ -2.42
SF3A1Q15459 RNU6-1036P-201ENST00000383959 104 ntBASIC-0.05□□□□□ -2.42
SF3A1Q15459 RNU6-260P-201ENST00000384092 107 ntBASIC-0.05□□□□□ -2.42
SF3A1Q15459 TRAJ54-201ENST00000390484 60 ntAPPRIS P1 BASIC-0.05□□□□□ -2.42
SF3A1Q15459 MIR1265-201ENST00000408444 86 ntBASIC-0.05□□□□□ -2.42
SF3A1Q15459 RNU7-171P-201ENST00000459581 62 ntBASIC-0.05□□□□□ -2.42
SF3A1Q15459 DLEU2_3.2-201ENST00000612883 73 ntBASIC-0.05□□□□□ -2.42
SF3A1Q15459 MIR6509-201ENST00000614603 85 ntBASIC-0.05□□□□□ -2.42
SF3A1Q15459 MIR582-201ENST00000365731 98 ntBASIC-0.06□□□□□ -2.42
SF3A1Q15459 RNU6-752P-201ENST00000516376 102 ntBASIC-0.06□□□□□ -2.42
SF3A1Q15459 MIR1295B-201ENST00000636144 60 ntBASIC-0.06□□□□□ -2.42
SF3A1Q15459 RNU6-929P-201ENST00000384429 107 ntBASIC-0.07□□□□□ -2.42
SF3A1Q15459 TRAJ37-201ENST00000612375 65 ntAPPRIS P1 BASIC-0.07□□□□□ -2.42
SF3A1Q15459 Clostridiales-1.4-201ENST00000636807 150 ntBASIC-0.07□□□□□ -2.42
SF3A1Q15459 RNU6-990P-201ENST00000364385 104 ntBASIC-0.08□□□□□ -2.42
SF3A1Q15459 RNU6-46P-201ENST00000383860 107 ntBASIC-0.08□□□□□ -2.42
SF3A1Q15459 RNU6-380P-201ENST00000410207 107 ntBASIC-0.08□□□□□ -2.42
SF3A1Q15459 MIRLET7A1-201ENST00000362295 80 ntBASIC-0.09□□□□□ -2.42
SF3A1Q15459 RNU6-478P-201ENST00000363904 110 ntBASIC-0.09□□□□□ -2.42
SF3A1Q15459 SNORA63.6-201ENST00000364921 119 ntBASIC-0.09□□□□□ -2.42
SF3A1Q15459 Y_RNA.185-201ENST00000363894 100 ntBASIC-0.1□□□□□ -2.43
SF3A1Q15459 SNORD73B-201ENST00000364394 72 ntBASIC-0.1□□□□□ -2.43
SF3A1Q15459 RNU6-1276P-201ENST00000365372 104 ntBASIC-0.1□□□□□ -2.43
SF3A1Q15459 RNU6-303P-201ENST00000517091 106 ntBASIC-0.1□□□□□ -2.43
SF3A1Q15459 MIR203A-201ENST00000384836 110 ntBASIC-0.11□□□□□ -2.43
SF3A1Q15459 AC062037.1-201ENST00000605302 128 ntBASIC-0.11□□□□□ -2.43
SF3A1Q15459 MIR6507-201ENST00000613630 70 ntBASIC-0.11□□□□□ -2.43
SF3A1Q15459 RNU6-315P-201ENST00000362666 107 ntBASIC-0.12□□□□□ -2.43
SF3A1Q15459 SNORA2.1-201ENST00000363089 137 ntBASIC-0.12□□□□□ -2.43
SF3A1Q15459 Y_RNA.250-201ENST00000364542 110 ntBASIC-0.12□□□□□ -2.43
SF3A1Q15459 Y_RNA.316-201ENST00000365118 111 ntBASIC-0.12□□□□□ -2.43
SF3A1Q15459 SNORA49-201ENST00000386157 136 ntBASIC-0.12□□□□□ -2.43
SF3A1Q15459 AC021146.9-201ENST00000512503 156 ntBASIC-0.12□□□□□ -2.43
SF3A1Q15459 MIR3657-201ENST00000584818 117 ntBASIC-0.12□□□□□ -2.43
SF3A1Q15459 SNORD115-25-201ENST00000362619 82 ntBASIC-0.13□□□□□ -2.43
SF3A1Q15459 RNU6-302P-201ENST00000365249 107 ntBASIC-0.13□□□□□ -2.43
SF3A1Q15459 SYCP2-202ENST00000371001 5479 ntAPPRIS P2 TSL 1 (best) BASIC-0.13□□□□□ -2.43
SF3A1Q15459 RNU6-1152P-201ENST00000384576 107 ntBASIC-0.14□□□□□ -2.43
SF3A1Q15459 IGLVI-20-201ENST00000519296 130 ntBASIC-0.14□□□□□ -2.43
SF3A1Q15459 AP000676.1-201ENST00000533307 52 ntBASIC-0.14□□□□□ -2.43
SF3A1Q15459 UBL4A-207ENST00000630530 102 ntTSL 5 BASIC-0.14□□□□□ -2.43
SF3A1Q15459 MIR1297-201ENST00000637311 77 ntBASIC-0.14□□□□□ -2.43
SF3A1Q15459 SNORD114-31-201ENST00000363219 75 ntBASIC-0.15□□□□□ -2.43
SF3A1Q15459 SNORA18.1-201ENST00000363418 128 ntBASIC-0.15□□□□□ -2.43
SF3A1Q15459 SNORA15B-2-201ENST00000384058 135 ntBASIC-0.15□□□□□ -2.43
SF3A1Q15459 SNORA15B-1-201ENST00000384334 135 ntBASIC-0.15□□□□□ -2.43
SF3A1Q15459 Y_RNA.633-201ENST00000459107 95 ntBASIC-0.15□□□□□ -2.43
SF3A1Q15459 RNU6-807P-201ENST00000516805 107 ntBASIC-0.15□□□□□ -2.43
SF3A1Q15459 SNORA40.17-201ENST00000517256 115 ntBASIC-0.15□□□□□ -2.43
SF3A1Q15459 MIR4666B-201ENST00000578142 81 ntBASIC-0.15□□□□□ -2.43
SF3A1Q15459 MIR1245B-201ENST00000636115 69 ntBASIC-0.15□□□□□ -2.43
SF3A1Q15459 SNORA32.1-201ENST00000364514 115 ntBASIC-0.16□□□□□ -2.44
SF3A1Q15459 SNORA26.2-201ENST00000390922 122 ntBASIC-0.16□□□□□ -2.44
SF3A1Q15459 AC074348.1-201ENST00000426503 132 ntBASIC-0.16□□□□□ -2.44
SF3A1Q15459 RNU6-1094P-201ENST00000362416 104 ntBASIC-0.17□□□□□ -2.44
SF3A1Q15459 SNORD49B-201ENST00000365172 72 ntBASIC-0.17□□□□□ -2.44
SF3A1Q15459 snoU13.13-201ENST00000458842 104 ntBASIC-0.17□□□□□ -2.44
SF3A1Q15459 RNA5SP147-201ENST00000516493 109 ntBASIC-0.17□□□□□ -2.44
SF3A1Q15459 AC145423.2-201ENST00000610631 239 ntBASIC-0.17□□□□□ -2.44
Retrieved 100 of 98,524 protein–RNA pairs in 169.7 ms