Protein–RNA interactions for Protein: Q12948

FOXC1, Forkhead box protein C1, humanhuman

Predictions only

Length 553 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXC1Q12948 SNORA67.6-201ENST00000391093 99 ntBASIC1.6□□□□□ -2.15
FOXC1Q12948 FABP5P4-201ENST00000437203 171 ntBASIC1.6□□□□□ -2.15
FOXC1Q12948 PVT1_3.1-201ENST00000620853 95 ntBASIC1.6□□□□□ -2.15
FOXC1Q12948 uc_338.20-201ENST00000621563 178 ntBASIC1.6□□□□□ -2.15
FOXC1Q12948 RNU6-924P-201ENST00000362926 108 ntBASIC1.59□□□□□ -2.15
FOXC1Q12948 MIR598-201ENST00000384868 97 ntBASIC1.59□□□□□ -2.15
FOXC1Q12948 RNU6-337P-201ENST00000391243 106 ntBASIC1.59□□□□□ -2.15
FOXC1Q12948 AC007991.2-201ENST00000520185 102 ntTSL 5 BASIC1.59□□□□□ -2.15
FOXC1Q12948 MIR4421-201ENST00000578133 69 ntBASIC1.59□□□□□ -2.15
FOXC1Q12948 AC012493.3-201ENST00000604494 112 ntBASIC1.59□□□□□ -2.15
FOXC1Q12948 SNORA25-201ENST00000384384 134 ntBASIC1.58□□□□□ -2.16
FOXC1Q12948 RNA5SP227-201ENST00000516184 113 ntBASIC1.58□□□□□ -2.16
FOXC1Q12948 RNU7-154P-201ENST00000516194 62 ntBASIC1.58□□□□□ -2.16
FOXC1Q12948 RNU6-717P-201ENST00000459076 104 ntBASIC1.57□□□□□ -2.16
FOXC1Q12948 ABCA5-201ENST00000392676 8220 ntAPPRIS P1 TSL 1 (best) BASIC1.56□□□□□ -2.16
FOXC1Q12948 MIR19B1-201ENST00000384829 87 ntBASIC1.56□□□□□ -2.16
FOXC1Q12948 AC244090.1-201ENST00000441884 93 ntBASIC1.56□□□□□ -2.16
FOXC1Q12948 AC025627.3-201ENST00000582078 182 ntBASIC1.56□□□□□ -2.16
FOXC1Q12948 MIR222-201ENST00000384992 110 ntBASIC1.55□□□□□ -2.16
FOXC1Q12948 RNA5SP268-201ENST00000516828 124 ntBASIC1.55□□□□□ -2.16
FOXC1Q12948 MIR4419B-201ENST00000577260 68 ntBASIC1.55□□□□□ -2.16
FOXC1Q12948 MIR6078-201ENST00000611069 100 ntBASIC1.55□□□□□ -2.16
FOXC1Q12948 SNORA70.25-201ENST00000612741 95 ntBASIC1.55□□□□□ -2.16
FOXC1Q12948 AL353770.2-201ENST00000620024 78 ntBASIC1.55□□□□□ -2.16
FOXC1Q12948 SNORD115-25-201ENST00000362619 82 ntBASIC1.54□□□□□ -2.16
FOXC1Q12948 TRAJ3-201ENST00000390534 62 ntAPPRIS P1 BASIC1.54□□□□□ -2.16
FOXC1Q12948 RNA5SP338-201ENST00000410495 85 ntBASIC1.54□□□□□ -2.16
FOXC1Q12948 HMGN2P22-201ENST00000427588 175 ntBASIC1.54□□□□□ -2.16
FOXC1Q12948 MIR7107-201ENST00000611489 80 ntBASIC1.54□□□□□ -2.16
FOXC1Q12948 EYS-205ENST00000393380 5450 ntTSL 1 (best) BASIC1.53□□□□□ -2.16
FOXC1Q12948 CCDC73-201ENST00000335185 3849 ntAPPRIS P2 TSL 2 BASIC1.53□□□□□ -2.16
FOXC1Q12948 MIR20A-201ENST00000362279 71 ntBASIC1.53□□□□□ -2.16
FOXC1Q12948 RNU6-986P-201ENST00000363133 102 ntBASIC1.53□□□□□ -2.16
FOXC1Q12948 MIR96-201ENST00000362288 78 ntBASIC1.52□□□□□ -2.17
FOXC1Q12948 RNA5SP327-201ENST00000362494 101 ntBASIC1.52□□□□□ -2.17
FOXC1Q12948 Y_RNA.30-201ENST00000362572 97 ntBASIC1.52□□□□□ -2.17
FOXC1Q12948 RNA5SP489-201ENST00000410986 109 ntBASIC1.52□□□□□ -2.17
FOXC1Q12948 RNU7-160P-201ENST00000516660 62 ntBASIC1.52□□□□□ -2.17
FOXC1Q12948 RNU1-29P-201ENST00000606574 126 ntBASIC1.52□□□□□ -2.17
FOXC1Q12948 MIR18A-201ENST00000362310 71 ntBASIC1.51□□□□□ -2.17
FOXC1Q12948 RNU6-458P-201ENST00000384179 107 ntBASIC1.51□□□□□ -2.17
FOXC1Q12948 MIR1323-201ENST00000408090 73 ntBASIC1.51□□□□□ -2.17
FOXC1Q12948 RNU6-1206P-201ENST00000516339 103 ntBASIC1.51□□□□□ -2.17
FOXC1Q12948 SNORA31.24-201ENST00000517232 57 ntBASIC1.51□□□□□ -2.17
FOXC1Q12948 MIR6773-201ENST00000612812 74 ntBASIC1.51□□□□□ -2.17
FOXC1Q12948 U6.58-201ENST00000613107 107 ntBASIC1.51□□□□□ -2.17
FOXC1Q12948 SNORA49-201ENST00000386157 136 ntBASIC1.5□□□□□ -2.17
FOXC1Q12948 RNU6-724P-201ENST00000390958 105 ntBASIC1.5□□□□□ -2.17
FOXC1Q12948 RPS29P1-201ENST00000465274 159 ntBASIC1.5□□□□□ -2.17
FOXC1Q12948 MIR548AL-201ENST00000578416 97 ntBASIC1.5□□□□□ -2.17
FOXC1Q12948 MIR200A-201ENST00000384875 90 ntBASIC1.49□□□□□ -2.17
FOXC1Q12948 RNA5SP470-201ENST00000516463 106 ntBASIC1.49□□□□□ -2.17
FOXC1Q12948 RNU6-1223P-201ENST00000517124 104 ntBASIC1.49□□□□□ -2.17
FOXC1Q12948 MIR429-201ENST00000362106 83 ntBASIC1.48□□□□□ -2.17
FOXC1Q12948 TRAJ49-201ENST00000390488 56 ntAPPRIS P1 BASIC1.48□□□□□ -2.17
FOXC1Q12948 SNORD2-201ENST00000459163 69 ntBASIC1.48□□□□□ -2.17
FOXC1Q12948 SNORD124-201ENST00000459577 104 ntBASIC1.48□□□□□ -2.17
FOXC1Q12948 RNU6ATAC14P-201ENST00000516218 91 ntBASIC1.48□□□□□ -2.17
FOXC1Q12948 G3BP1-214ENST00000627077 114 ntTSL 5 BASIC1.48□□□□□ -2.17
FOXC1Q12948 Y_RNA.69-201ENST00000362885 109 ntBASIC1.47□□□□□ -2.17
FOXC1Q12948 RNU6-598P-201ENST00000364017 105 ntBASIC1.47□□□□□ -2.17
FOXC1Q12948 MIR520E-201ENST00000384867 87 ntBASIC1.47□□□□□ -2.17
FOXC1Q12948 RNU6ATAC2P-201ENST00000387943 126 ntBASIC1.47□□□□□ -2.17
FOXC1Q12948 AL354695.1-201ENST00000427935 228 ntBASIC1.47□□□□□ -2.17
FOXC1Q12948 RNA5SP94-201ENST00000516917 108 ntBASIC1.47□□□□□ -2.17
FOXC1Q12948 MIR4752-201ENST00000579672 72 ntBASIC1.47□□□□□ -2.17
FOXC1Q12948 MIRLET7B-201ENST00000385140 83 ntBASIC1.46□□□□□ -2.18
FOXC1Q12948 MIR5706-201ENST00000579841 80 ntBASIC1.46□□□□□ -2.18
FOXC1Q12948 IL6ST-202ENST00000381286 201 ntTSL 1 (best) BASIC1.45□□□□□ -2.18
FOXC1Q12948 MIR579-201ENST00000385221 98 ntBASIC1.45□□□□□ -2.18
FOXC1Q12948 RNU7-151P-201ENST00000516930 53 ntBASIC1.45□□□□□ -2.18
FOXC1Q12948 MIR3122-201ENST00000577243 73 ntBASIC1.45□□□□□ -2.18
FOXC1Q12948 MIR151B-201ENST00000584249 96 ntBASIC1.45□□□□□ -2.18
FOXC1Q12948 SNORD114-27-201ENST00000363766 70 ntBASIC1.44□□□□□ -2.18
FOXC1Q12948 RNU4-45P-201ENST00000365469 141 ntBASIC1.44□□□□□ -2.18
FOXC1Q12948 RNU6-696P-201ENST00000390834 107 ntBASIC1.44□□□□□ -2.18
FOXC1Q12948 RNU6ATAC20P-201ENST00000408436 127 ntBASIC1.44□□□□□ -2.18
FOXC1Q12948 RNA5SP255-201ENST00000516370 107 ntBASIC1.44□□□□□ -2.18
FOXC1Q12948 DENND4A-209ENST00000635620 5887 ntTSL 5 BASIC1.42□□□□□ -2.18
FOXC1Q12948 RNU1-93P-201ENST00000364704 169 ntBASIC1.42□□□□□ -2.18
FOXC1Q12948 MIR125B1-201ENST00000385236 88 ntBASIC1.42□□□□□ -2.18
FOXC1Q12948 U2.18-201ENST00000622185 84 ntBASIC1.42□□□□□ -2.18
FOXC1Q12948 RNU6-502P-201ENST00000362419 108 ntBASIC1.41□□□□□ -2.18
FOXC1Q12948 RNU6-175P-201ENST00000516896 107 ntBASIC1.41□□□□□ -2.18
FOXC1Q12948 MIR6788-201ENST00000618842 66 ntBASIC1.41□□□□□ -2.18
FOXC1Q12948 HOTAIRM1_3.1-201ENST00000619974 59 ntBASIC1.41□□□□□ -2.18
FOXC1Q12948 SNORD114-29-201ENST00000364819 70 ntBASIC1.4□□□□□ -2.19
FOXC1Q12948 RNY1P8-201ENST00000383970 114 ntBASIC1.4□□□□□ -2.19
FOXC1Q12948 AC011195.1-201ENST00000578177 177 ntBASIC1.4□□□□□ -2.19
FOXC1Q12948 MIR1304-201ENST00000408243 91 ntBASIC1.39□□□□□ -2.19
FOXC1Q12948 SNORD99-201ENST00000408612 74 ntBASIC1.39□□□□□ -2.19
FOXC1Q12948 MIR548J-201ENST00000408833 112 ntBASIC1.39□□□□□ -2.19
FOXC1Q12948 AL451105.1-201ENST00000450005 189 ntBASIC1.39□□□□□ -2.19
FOXC1Q12948 CEP162-201ENST00000257766 5063 ntTSL 1 (best) BASIC1.37□□□□□ -2.19
FOXC1Q12948 MBNL3-212ENST00000538204 11294 ntTSL 1 (best) BASIC1.37□□□□□ -2.19
FOXC1Q12948 RNU6-828P-201ENST00000364876 107 ntBASIC1.36□□□□□ -2.19
FOXC1Q12948 SNORD114-24-201ENST00000365029 72 ntBASIC1.36□□□□□ -2.19
FOXC1Q12948 MIR329-2-201ENST00000385029 84 ntBASIC1.36□□□□□ -2.19
FOXC1Q12948 RNU7-188P-201ENST00000517063 64 ntBASIC1.36□□□□□ -2.19
FOXC1Q12948 RN7SL793P-201ENST00000583259 296 ntBASIC1.36□□□□□ -2.19
Retrieved 100 of 98,524 protein–RNA pairs in 223.9 ms