Protein–RNA interactions for Protein: Q01955

COL4A3, Collagen alpha-3(IV) chain, humanhuman

Predictions only

Length 1,670 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A3Q01955 RNA5SP94-201ENST00000516917 108 ntBASIC0.78□□□□□ -2.28
COL4A3Q01955 AC018659.1-201ENST00000551083 169 ntBASIC0.78□□□□□ -2.28
COL4A3Q01955 MIR6835-201ENST00000621552 64 ntBASIC0.78□□□□□ -2.28
COL4A3Q01955 AC243829.3-201ENST00000622177 108 ntBASIC0.78□□□□□ -2.28
COL4A3Q01955 MIR608-201ENST00000384820 100 ntBASIC0.78□□□□□ -2.29
COL4A3Q01955 MIR508-201ENST00000384857 115 ntBASIC0.78□□□□□ -2.29
COL4A3Q01955 SNORA62.5-201ENST00000516634 120 ntBASIC0.78□□□□□ -2.29
COL4A3Q01955 AC073869.9-201ENST00000641610 120 ntBASIC0.78□□□□□ -2.29
COL4A3Q01955 MIR329-2-201ENST00000385029 84 ntBASIC0.77□□□□□ -2.29
COL4A3Q01955 RNA5SP484-201ENST00000458857 111 ntBASIC0.77□□□□□ -2.29
COL4A3Q01955 OR2A41P-201ENST00000473586 105 ntBASIC0.77□□□□□ -2.29
COL4A3Q01955 MIR3657-201ENST00000584818 117 ntBASIC0.77□□□□□ -2.29
COL4A3Q01955 CALCRL-202ENST00000409998 5223 ntAPPRIS P1 TSL 5 BASIC0.76□□□□□ -2.29
COL4A3Q01955 SNORA36.2-201ENST00000384004 127 ntBASIC0.76□□□□□ -2.29
COL4A3Q01955 AC125388.1-201ENST00000459631 156 ntBASIC0.76□□□□□ -2.29
COL4A3Q01955 RNU6-881P-201ENST00000516813 102 ntBASIC0.76□□□□□ -2.29
COL4A3Q01955 MIR4802-201ENST00000581881 80 ntBASIC0.76□□□□□ -2.29
COL4A3Q01955 AC023932.2-201ENST00000603176 175 ntBASIC0.76□□□□□ -2.29
COL4A3Q01955 RNU6-1216P-201ENST00000362590 107 ntBASIC0.75□□□□□ -2.29
COL4A3Q01955 RNA5SP368-201ENST00000364298 116 ntBASIC0.75□□□□□ -2.29
COL4A3Q01955 RNU6-630P-201ENST00000391258 106 ntBASIC0.75□□□□□ -2.29
COL4A3Q01955 SNORD110-201ENST00000408189 75 ntBASIC0.75□□□□□ -2.29
COL4A3Q01955 RNA5SP266-201ENST00000410273 108 ntBASIC0.75□□□□□ -2.29
COL4A3Q01955 RNA5SP347-201ENST00000362445 119 ntBASIC0.75□□□□□ -2.29
COL4A3Q01955 ACA64.5-201ENST00000516207 127 ntBASIC0.75□□□□□ -2.29
COL4A3Q01955 uc_338.10-201ENST00000621872 182 ntBASIC0.75□□□□□ -2.29
COL4A3Q01955 U6.111-201ENST00000636093 83 ntBASIC0.75□□□□□ -2.29
COL4A3Q01955 RNU6-800P-201ENST00000384473 103 ntBASIC0.74□□□□□ -2.29
COL4A3Q01955 TRAJ42-201ENST00000390495 66 ntAPPRIS P1 BASIC0.74□□□□□ -2.29
COL4A3Q01955 RNU6-604P-201ENST00000390917 100 ntBASIC0.74□□□□□ -2.29
COL4A3Q01955 MIR1468-201ENST00000410600 86 ntBASIC0.74□□□□□ -2.29
COL4A3Q01955 Y_RNA.340-201ENST00000365330 92 ntBASIC0.73□□□□□ -2.29
COL4A3Q01955 RNU6-351P-201ENST00000516097 100 ntBASIC0.73□□□□□ -2.29
COL4A3Q01955 RNU6-982P-201ENST00000516216 102 ntBASIC0.72□□□□□ -2.29
COL4A3Q01955 MIR7107-201ENST00000611489 80 ntBASIC0.72□□□□□ -2.29
COL4A3Q01955 SNORA9.1-201ENST00000362412 131 ntBASIC0.72□□□□□ -2.29
COL4A3Q01955 Y_RNA.386-201ENST00000383913 105 ntBASIC0.72□□□□□ -2.29
COL4A3Q01955 AC006210.1-201ENST00000424882 111 ntBASIC0.72□□□□□ -2.29
COL4A3Q01955 MTND4LP1-201ENST00000446263 157 ntBASIC0.72□□□□□ -2.29
COL4A3Q01955 AC104692.1-201ENST00000472406 90 ntBASIC0.72□□□□□ -2.29
COL4A3Q01955 RNU6-229P-201ENST00000516614 102 ntBASIC0.72□□□□□ -2.29
COL4A3Q01955 HOXA11-AS1_6.1-201ENST00000620092 179 ntBASIC0.72□□□□□ -2.29
COL4A3Q01955 RNA5SP517-201ENST00000364724 117 ntBASIC0.71□□□□□ -2.3
COL4A3Q01955 SNORD116-24-201ENST00000384549 92 ntBASIC0.71□□□□□ -2.3
COL4A3Q01955 AC069271.1-201ENST00000445577 156 ntBASIC0.71□□□□□ -2.3
COL4A3Q01955 RNU6-758P-201ENST00000516292 89 ntBASIC0.71□□□□□ -2.3
COL4A3Q01955 RNA5SP147-201ENST00000516493 109 ntBASIC0.71□□□□□ -2.3
COL4A3Q01955 AC005520.4-201ENST00000604337 90 ntBASIC0.71□□□□□ -2.3
COL4A3Q01955 AC092634.7-201ENST00000621022 103 ntBASIC0.71□□□□□ -2.3
COL4A3Q01955 MIR6739-201ENST00000622461 75 ntBASIC0.71□□□□□ -2.3
COL4A3Q01955 SNORA2.1-201ENST00000363089 137 ntBASIC0.69□□□□□ -2.3
COL4A3Q01955 RNU6-990P-201ENST00000364385 104 ntBASIC0.69□□□□□ -2.3
COL4A3Q01955 Y_RNA.250-201ENST00000364542 110 ntBASIC0.69□□□□□ -2.3
COL4A3Q01955 RNU6-471P-201ENST00000383944 106 ntBASIC0.69□□□□□ -2.3
COL4A3Q01955 Y_RNA.407-201ENST00000383986 113 ntBASIC0.69□□□□□ -2.3
COL4A3Q01955 MIR652-201ENST00000385278 98 ntBASIC0.69□□□□□ -2.3
COL4A3Q01955 MIR140-201ENST00000385282 100 ntBASIC0.69□□□□□ -2.3
COL4A3Q01955 MIR5706-201ENST00000579841 80 ntBASIC0.69□□□□□ -2.3
COL4A3Q01955 AC243829.6-201ENST00000612652 106 ntBASIC0.69□□□□□ -2.3
COL4A3Q01955 RNU6-668P-201ENST00000364180 107 ntBASIC0.69□□□□□ -2.3
COL4A3Q01955 RNU6-1187P-201ENST00000364771 110 ntBASIC0.69□□□□□ -2.3
COL4A3Q01955 RNU6-110P-201ENST00000384508 104 ntBASIC0.69□□□□□ -2.3
COL4A3Q01955 SCARNA17.3-201ENST00000516381 125 ntBASIC0.69□□□□□ -2.3
COL4A3Q01955 SNORD118-201ENST00000363593 134 ntBASIC0.68□□□□□ -2.3
COL4A3Q01955 RNU6-1162P-201ENST00000384443 104 ntBASIC0.68□□□□□ -2.3
COL4A3Q01955 RNY1P8-201ENST00000383970 114 ntBASIC0.67□□□□□ -2.3
COL4A3Q01955 Y_RNA.443-201ENST00000384135 111 ntBASIC0.67□□□□□ -2.3
COL4A3Q01955 MIR518A1-201ENST00000385068 85 ntBASIC0.67□□□□□ -2.3
COL4A3Q01955 SNORA40.8-201ENST00000411034 126 ntBASIC0.67□□□□□ -2.3
COL4A3Q01955 snoU13.13-201ENST00000458842 104 ntBASIC0.67□□□□□ -2.3
COL4A3Q01955 MIR4752-201ENST00000579672 72 ntBASIC0.67□□□□□ -2.3
COL4A3Q01955 MIR4514-201ENST00000581410 57 ntBASIC0.67□□□□□ -2.3
COL4A3Q01955 FAM135A-203ENST00000370479 5930 ntTSL 1 (best) BASIC0.67□□□□□ -2.3
COL4A3Q01955 SNORA25.4-201ENST00000363666 124 ntBASIC0.66□□□□□ -2.3
COL4A3Q01955 RNU6-645P-201ENST00000364649 106 ntBASIC0.66□□□□□ -2.3
COL4A3Q01955 MIR4473-201ENST00000583731 91 ntBASIC0.66□□□□□ -2.3
COL4A3Q01955 SNORA70.25-201ENST00000612741 95 ntBASIC0.66□□□□□ -2.3
COL4A3Q01955 MIR146A-201ENST00000385201 99 ntBASIC0.65□□□□□ -2.3
COL4A3Q01955 RNU6-656P-201ENST00000516785 107 ntBASIC0.65□□□□□ -2.3
COL4A3Q01955 SNORA40.17-201ENST00000517256 115 ntBASIC0.65□□□□□ -2.3
COL4A3Q01955 Y_RNA.423-201ENST00000384057 113 ntBASIC0.65□□□□□ -2.31
COL4A3Q01955 SNORA15B-2-201ENST00000384058 135 ntBASIC0.65□□□□□ -2.31
COL4A3Q01955 SNORA15B-1-201ENST00000384334 135 ntBASIC0.65□□□□□ -2.31
COL4A3Q01955 MIR521-2-201ENST00000384818 87 ntBASIC0.65□□□□□ -2.31
COL4A3Q01955 RNA5SP299-201ENST00000391203 116 ntBASIC0.65□□□□□ -2.31
COL4A3Q01955 PSMC1P5-201ENST00000512850 177 ntBASIC0.65□□□□□ -2.31
COL4A3Q01955 SNORA25.18-201ENST00000607153 114 ntBASIC0.65□□□□□ -2.31
COL4A3Q01955 Y_RNA.457-201ENST00000384237 111 ntBASIC0.64□□□□□ -2.31
COL4A3Q01955 RPL39P28-201ENST00000465655 155 ntBASIC0.64□□□□□ -2.31
COL4A3Q01955 CEP290-203ENST00000547691 5968 ntTSL 1 (best) BASIC0.64□□□□□ -2.31
COL4A3Q01955 HMGN2P22-201ENST00000427588 175 ntBASIC0.63□□□□□ -2.31
COL4A3Q01955 RNU6-542P-201ENST00000516405 103 ntBASIC0.63□□□□□ -2.31
COL4A3Q01955 MIR548AE1-201ENST00000583292 70 ntBASIC0.63□□□□□ -2.31
COL4A3Q01955 MIR6866-201ENST00000638146 69 ntBASIC0.63□□□□□ -2.31
COL4A3Q01955 Y_RNA.125-201ENST00000363371 111 ntBASIC0.62□□□□□ -2.31
COL4A3Q01955 RNA5SP215-201ENST00000363440 122 ntBASIC0.62□□□□□ -2.31
COL4A3Q01955 SNORD71-201ENST00000411292 86 ntBASIC0.62□□□□□ -2.31
COL4A3Q01955 RNU6-848P-201ENST00000515948 107 ntBASIC0.62□□□□□ -2.31
COL4A3Q01955 RNU6-617P-201ENST00000516147 107 ntBASIC0.62□□□□□ -2.31
COL4A3Q01955 RNU6-473P-201ENST00000516164 107 ntBASIC0.62□□□□□ -2.31
Retrieved 100 of 98,524 protein–RNA pairs in 281.4 ms