Protein–RNA interactions for Protein: P61968

LMO4, LIM domain transcription factor LMO4, humanhuman

Predictions only

Length 165 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LMO4P61968 Y_RNA.125-201ENST00000363371 111 ntBASIC0.34□□□□□ -2.36
LMO4P61968 VTRNA1-3-201ENST00000365645 89 ntBASIC0.34□□□□□ -2.36
LMO4P61968 MIR582-201ENST00000365731 98 ntBASIC0.34□□□□□ -2.36
LMO4P61968 RNU6-1241P-201ENST00000384536 107 ntBASIC0.34□□□□□ -2.36
LMO4P61968 MIR501-201ENST00000390204 84 ntBASIC0.34□□□□□ -2.36
LMO4P61968 RNU6-604P-201ENST00000390917 100 ntBASIC0.34□□□□□ -2.36
LMO4P61968 RNU6-587P-201ENST00000391282 106 ntBASIC0.34□□□□□ -2.36
LMO4P61968 SCARNA17.3-201ENST00000516381 125 ntBASIC0.34□□□□□ -2.36
LMO4P61968 MIR3657-201ENST00000584818 117 ntBASIC0.34□□□□□ -2.36
LMO4P61968 SNORD45.1-201ENST00000363181 77 ntBASIC0.33□□□□□ -2.36
LMO4P61968 SNORD114-4-201ENST00000363962 75 ntBASIC0.33□□□□□ -2.36
LMO4P61968 RNU6-260P-201ENST00000384092 107 ntBASIC0.33□□□□□ -2.36
LMO4P61968 MIR760-201ENST00000390220 80 ntBASIC0.33□□□□□ -2.36
LMO4P61968 RNA5SP325-201ENST00000363756 130 ntBASIC0.32□□□□□ -2.36
LMO4P61968 MIR154-201ENST00000385243 84 ntBASIC0.32□□□□□ -2.36
LMO4P61968 RNU6-848P-201ENST00000515948 107 ntBASIC0.32□□□□□ -2.36
LMO4P61968 RNU6-863P-201ENST00000515989 104 ntBASIC0.32□□□□□ -2.36
LMO4P61968 RNU6-617P-201ENST00000516147 107 ntBASIC0.32□□□□□ -2.36
LMO4P61968 RNU6-473P-201ENST00000516164 107 ntBASIC0.32□□□□□ -2.36
LMO4P61968 RNU6-1049P-201ENST00000516414 107 ntBASIC0.32□□□□□ -2.36
LMO4P61968 RNA5SP147-201ENST00000516493 109 ntBASIC0.32□□□□□ -2.36
LMO4P61968 MIRLET7D-201ENST00000362263 87 ntBASIC0.31□□□□□ -2.36
LMO4P61968 SNORA2.1-201ENST00000363089 137 ntBASIC0.31□□□□□ -2.36
LMO4P61968 SNORD115-22-201ENST00000364456 82 ntBASIC0.31□□□□□ -2.36
LMO4P61968 SNORD115-31-201ENST00000365318 82 ntBASIC0.31□□□□□ -2.36
LMO4P61968 SNORA50A-201ENST00000384225 134 ntBASIC0.31□□□□□ -2.36
LMO4P61968 SNORD45A-201ENST00000384512 84 ntBASIC0.31□□□□□ -2.36
LMO4P61968 snoU13.13-201ENST00000458842 104 ntBASIC0.31□□□□□ -2.36
LMO4P61968 MIR4677-201ENST00000584153 80 ntBASIC0.31□□□□□ -2.36
LMO4P61968 U7.6-201ENST00000610841 64 ntBASIC0.31□□□□□ -2.36
LMO4P61968 MIR499B-201ENST00000636498 73 ntBASIC0.31□□□□□ -2.36
LMO4P61968 CEP290-203ENST00000547691 5968 ntTSL 1 (best) BASIC0.3□□□□□ -2.36
LMO4P61968 RNA5SP128-201ENST00000365305 116 ntBASIC0.3□□□□□ -2.36
LMO4P61968 MIR548E-201ENST00000408287 88 ntBASIC0.3□□□□□ -2.36
LMO4P61968 RNU6-634P-201ENST00000459134 106 ntBASIC0.3□□□□□ -2.36
LMO4P61968 RNU7-129P-201ENST00000516128 62 ntBASIC0.3□□□□□ -2.36
LMO4P61968 MIR548AD-201ENST00000584780 82 ntBASIC0.3□□□□□ -2.36
LMO4P61968 uc_338.10-201ENST00000621872 182 ntBASIC0.3□□□□□ -2.36
LMO4P61968 MIR924-201ENST00000638017 53 ntBASIC0.3□□□□□ -2.36
LMO4P61968 RNU6-815P-201ENST00000384080 113 ntBASIC0.29□□□□□ -2.36
LMO4P61968 MIR516B1-201ENST00000385211 90 ntBASIC0.29□□□□□ -2.36
LMO4P61968 MIR3925-201ENST00000584674 77 ntBASIC0.29□□□□□ -2.36
LMO4P61968 MIR8053-201ENST00000613344 75 ntBASIC0.29□□□□□ -2.36
LMO4P61968 MIR330-201ENST00000362196 94 ntBASIC0.28□□□□□ -2.36
LMO4P61968 SNORA63.6-201ENST00000364921 119 ntBASIC0.28□□□□□ -2.36
LMO4P61968 RNU6-540P-201ENST00000384622 101 ntBASIC0.28□□□□□ -2.36
LMO4P61968 AC021146.9-201ENST00000512503 156 ntBASIC0.28□□□□□ -2.36
LMO4P61968 RNU6-982P-201ENST00000516216 102 ntBASIC0.28□□□□□ -2.36
LMO4P61968 RNU7-188P-201ENST00000517063 64 ntBASIC0.28□□□□□ -2.36
LMO4P61968 SNORD113.1-201ENST00000363280 73 ntBASIC0.27□□□□□ -2.37
LMO4P61968 RNU6-871P-201ENST00000516122 100 ntBASIC0.27□□□□□ -2.37
LMO4P61968 RNU6-881P-201ENST00000516813 102 ntBASIC0.27□□□□□ -2.37
LMO4P61968 RNA5SP330-201ENST00000517096 96 ntBASIC0.27□□□□□ -2.37
LMO4P61968 AC090625.1-201ENST00000357130 210 ntBASIC0.26□□□□□ -2.37
LMO4P61968 MIR20A-201ENST00000362279 71 ntBASIC0.26□□□□□ -2.37
LMO4P61968 RNA5SP62-201ENST00000363457 110 ntBASIC0.26□□□□□ -2.37
LMO4P61968 Y_RNA.250-201ENST00000364542 110 ntBASIC0.26□□□□□ -2.37
LMO4P61968 SNORD114-29-201ENST00000364819 70 ntBASIC0.26□□□□□ -2.37
LMO4P61968 SNORA49-201ENST00000386157 136 ntBASIC0.26□□□□□ -2.37
LMO4P61968 AC073261.1-201ENST00000429409 121 ntBASIC0.26□□□□□ -2.37
LMO4P61968 AC244090.1-201ENST00000441884 93 ntBASIC0.26□□□□□ -2.37
LMO4P61968 RNU6-175P-201ENST00000516896 107 ntBASIC0.26□□□□□ -2.37
LMO4P61968 RN7SL660P-201ENST00000614852 299 ntBASIC0.26□□□□□ -2.37
LMO4P61968 AC084368.1-201ENST00000620935 65 ntBASIC0.26□□□□□ -2.37
LMO4P61968 MIR6739-201ENST00000622461 75 ntBASIC0.26□□□□□ -2.37
LMO4P61968 UBL4A-207ENST00000630530 102 ntTSL 5 BASIC0.26□□□□□ -2.37
LMO4P61968 SNORA9.1-201ENST00000362412 131 ntBASIC0.25□□□□□ -2.37
LMO4P61968 RNU6-645P-201ENST00000364649 106 ntBASIC0.25□□□□□ -2.37
LMO4P61968 RNU6-895P-201ENST00000384125 103 ntBASIC0.25□□□□□ -2.37
LMO4P61968 RNU6-127P-201ENST00000390897 107 ntBASIC0.25□□□□□ -2.37
LMO4P61968 Y_RNA.633-201ENST00000459107 95 ntBASIC0.25□□□□□ -2.37
LMO4P61968 RNA5SP134-201ENST00000516492 96 ntBASIC0.25□□□□□ -2.37
LMO4P61968 MIR8087-201ENST00000612745 78 ntBASIC0.25□□□□□ -2.37
LMO4P61968 SNORD116-24-201ENST00000384549 92 ntBASIC0.24□□□□□ -2.37
LMO4P61968 RNU6-663P-201ENST00000391105 106 ntBASIC0.24□□□□□ -2.37
LMO4P61968 MIR876-201ENST00000401147 81 ntBASIC0.24□□□□□ -2.37
LMO4P61968 MIR548H2-201ENST00000408874 88 ntBASIC0.24□□□□□ -2.37
LMO4P61968 AC114801.3-201ENST00000510231 177 ntBASIC0.24□□□□□ -2.37
LMO4P61968 RNU6-656P-201ENST00000516785 107 ntBASIC0.24□□□□□ -2.37
LMO4P61968 RNU6-1216P-201ENST00000362590 107 ntBASIC0.23□□□□□ -2.37
LMO4P61968 Y_RNA.115-201ENST00000363272 98 ntBASIC0.23□□□□□ -2.37
LMO4P61968 RNA5SP457-201ENST00000363657 124 ntBASIC0.23□□□□□ -2.37
LMO4P61968 SNORA33.1-201ENST00000364957 130 ntBASIC0.23□□□□□ -2.37
LMO4P61968 RNU6-1327P-201ENST00000365302 105 ntBASIC0.23□□□□□ -2.37
LMO4P61968 MIR521-2-201ENST00000384818 87 ntBASIC0.23□□□□□ -2.37
LMO4P61968 MIR643-201ENST00000385267 97 ntBASIC0.23□□□□□ -2.37
LMO4P61968 AC069113.3-201ENST00000521019 150 ntBASIC0.23□□□□□ -2.37
LMO4P61968 CCDC7-215ENST00000639629 4158 ntAPPRIS ALT2 TSL 5 BASIC0.22□□□□□ -2.37
LMO4P61968 RNU6-1162P-201ENST00000384443 104 ntBASIC0.22□□□□□ -2.37
LMO4P61968 RNU6-649P-201ENST00000384463 107 ntBASIC0.22□□□□□ -2.37
LMO4P61968 SNORD30.1-201ENST00000391309 70 ntBASIC0.22□□□□□ -2.37
LMO4P61968 MIR1197-201ENST00000408818 88 ntBASIC0.22□□□□□ -2.37
LMO4P61968 AC108740.1-201ENST00000498629 225 ntBASIC0.22□□□□□ -2.37
LMO4P61968 RNU6-539P-201ENST00000516665 103 ntBASIC0.22□□□□□ -2.37
LMO4P61968 SCARNA11.2-201ENST00000517183 154 ntBASIC0.22□□□□□ -2.37
LMO4P61968 MIR4514-201ENST00000581410 57 ntBASIC0.22□□□□□ -2.37
LMO4P61968 AL109933.3-201ENST00000619095 188 ntBASIC0.22□□□□□ -2.37
LMO4P61968 AC090617.8-201ENST00000623339 167 ntBASIC0.22□□□□□ -2.37
LMO4P61968 RNU6-1036P-201ENST00000383959 104 ntBASIC0.21□□□□□ -2.38
LMO4P61968 SNORA15B-2-201ENST00000384058 135 ntBASIC0.21□□□□□ -2.38
Retrieved 100 of 98,524 protein–RNA pairs in 236.9 ms